Nikolaus Sonnenschein
Affiliations: | DTU - Technical University of Denmark |
Area:
computational biologyGoogle:
"Nikolaus Sonnenschein"Parents
Sign in to add mentorMarc-Thorsten Hütt | grad student | 2007-2011 | Jacobs University Bremen |
Bernhard O. Palsson | post-doc | 2011-2013 | UCSD |
Children
Sign in to add traineeMarta Matos | grad student | 2014-2018 | DTU - Technical University of Denmark |
Christian Lieven | grad student | 2015-2018 | DTU - Technical University of Denmark |
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Publications
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Petersen SD, Levassor L, Pedersen CM, et al. (2024) teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering. Plos Computational Biology. 20: e1011929 |
Carrasco Muriel J, Long C, Sonnenschein N. (2023) Simultaneous application of enzyme and thermodynamic constraints to metabolic models using an updated Python implementation of GECKO. Microbiology Spectrum. e0170523 |
Lennen RM, Lim HG, Jensen K, et al. (2023) Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals. Metabolic Engineering |
Domenzain I, Sánchez B, Anton M, et al. (2022) Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. Nature Communications. 13: 3766 |
He B, Cai C, McCubbin T, et al. (2022) A Genome-Scale Metabolic Model of : Assessing Bioenergetics and Thermodynamic Feasibility. Metabolites. 12 |
Elsemman IE, Rodriguez Prado A, Grigaitis P, et al. (2022) Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies. Nature Communications. 13: 801 |
Mol V, Bennett M, Sánchez BJ, et al. (2021) Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism. Metabolic Engineering |
Lu H, Li F, Sánchez BJ, et al. (2020) Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism. Nature Communications. 11: 5443 |
Wright NR, Wulff T, Palmqvist EA, et al. (2020) Fluctuations in glucose availability prevent global proteome changes and physiological transition during prolonged chemostat cultivations of S. cerevisiae. Biotechnology and Bioengineering |
Li S, Jendresen CB, Landberg J, et al. (2020) Genome-wide CRISPRi-based identification of targets for decoupling growth from production. Acs Synthetic Biology |