Nikolaus Sonnenschein

Affiliations: 
DTU - Technical University of Denmark 
Area:
computational biology
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"Nikolaus Sonnenschein"
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Publications

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Petersen SD, Levassor L, Pedersen CM, et al. (2024) teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering. Plos Computational Biology. 20: e1011929
Carrasco Muriel J, Long C, Sonnenschein N. (2023) Simultaneous application of enzyme and thermodynamic constraints to metabolic models using an updated Python implementation of GECKO. Microbiology Spectrum. e0170523
Lennen RM, Lim HG, Jensen K, et al. (2023) Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals. Metabolic Engineering
Domenzain I, Sánchez B, Anton M, et al. (2022) Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. Nature Communications. 13: 3766
He B, Cai C, McCubbin T, et al. (2022) A Genome-Scale Metabolic Model of : Assessing Bioenergetics and Thermodynamic Feasibility. Metabolites. 12
Elsemman IE, Rodriguez Prado A, Grigaitis P, et al. (2022) Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies. Nature Communications. 13: 801
Mol V, Bennett M, Sánchez BJ, et al. (2021) Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism. Metabolic Engineering
Lu H, Li F, Sánchez BJ, et al. (2020) Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism. Nature Communications. 11: 5443
Wright NR, Wulff T, Palmqvist EA, et al. (2020) Fluctuations in glucose availability prevent global proteome changes and physiological transition during prolonged chemostat cultivations of S. cerevisiae. Biotechnology and Bioengineering
Li S, Jendresen CB, Landberg J, et al. (2020) Genome-wide CRISPRi-based identification of targets for decoupling growth from production. Acs Synthetic Biology
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