Haley J. Abel, Ph.D. - Publications

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
Area:
mathematical genetics, probability, statistics

39/63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gomez F, Fisk B, McMichael JF, Mosior M, Foltz JA, Skidmore ZL, Duncavage EJ, Miller CA, Abel H, Lee YS, Krysiak K, Russler-Germain DA, Watkins MP, Ramirez CA, Schmidt A, et al. Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma. Cancer Research Communications. PMID 37910143 DOI: 10.1158/2767-9764.CRC-23-0140  0.374
2023 Abel HJ, Oetjen KA, Miller CA, Ramakrishnan SM, Day RB, Helton NM, Fronick CC, Fulton RS, Heath SE, Tarnawsky SP, Nonavinkere Srivatsan S, Duncavage EJ, Schroeder MC, Payton JE, Spencer DH, et al. Genomic landscape of TP53-mutated myeloid malignancies. Blood Advances. PMID 37339484 DOI: 10.1182/bloodadvances.2023010156  0.365
2023 Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x  0.345
2023 Abel HJ, Oetjen KA, Miller CA, Ramakrishnan SM, Day RB, Helton NM, Fronick CC, Fulton RS, Heath SE, Tarnawsky SP, Srivatsan SN, Duncavage EJ, Schroeder MC, Payton JE, Spencer DH, et al. Genomic landscape of -mutated myeloid malignancies. Medrxiv : the Preprint Server For Health Sciences. PMID 36711871 DOI: 10.1101/2023.01.10.23284322  0.373
2022 Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R, Nagulapalli K, Fairley S, Runnels A, Winterkorn L, Lowy E, Germer S, et al. High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios. Cell. 185: 3426-3440.e19. PMID 36055201 DOI: 10.1016/j.cell.2022.08.004  0.347
2021 Chen L, Abel HJ, Das I, Larson DE, Ganel L, Kanchi KL, Regier AA, Young EP, Kang CJ, Scott AJ, Chiang C, Wang X, Lu S, Christ R, Service SK, et al. Association of structural variation with cardiometabolic traits in Finns. American Journal of Human Genetics. 108: 583-596. PMID 33798444 DOI: 10.1016/j.ajhg.2021.03.008  0.328
2021 Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, ... ... Abel HJ, et al. Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.). PMID 33632895 DOI: 10.1126/science.abf7117  0.327
2020 Abel HJ, Larson DE, Regier AA, Chiang C, Das I, Kanchi KL, Layer RM, Neale BM, Salerno WJ, Reeves C, Buyske S, Matise TC, Muzny DM, Zody MC, et al. Mapping and characterization of structural variation in 17,795 human genomes. Nature. PMID 32460305 DOI: 10.1038/s41586-020-2371-0  0.35
2019 Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS, Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ, Kanchi KL, Koboldt DC, Larson DE, et al. Author Correction: Exome sequencing of Finnish isolates enhances rare-variant association power. Nature. PMID 31686056 DOI: 10.1038/S41586-019-1726-X  0.345
2019 Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS, Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ, Kanchi KL, Koboldt DC, Larson DE, et al. Exome sequencing of Finnish isolates enhances rare-variant association power. Nature. PMID 31367044 DOI: 10.1038/S41586-019-1457-Z  0.439
2019 Larson DE, Abel HJ, Chiang C, Badve A, Das I, Eldred JM, Layer RM, Hall IM. svtools: population-scale analysis of structural variation. Bioinformatics (Oxford, England). PMID 31218349 DOI: 10.1093/Bioinformatics/Btz492  0.385
2018 Duncavage EJ, Jacoby MA, Chang GS, Miller CA, Edwin N, Shao J, Elliott K, Robinson J, Abel H, Fulton RS, Fronick CC, O'Laughlin M, Heath SE, Brendel K, Saba R, et al. Mutation Clearance after Transplantation for Myelodysplastic Syndrome. The New England Journal of Medicine. 379: 1028-1041. PMID 30207916 DOI: 10.1056/Nejmoa1804714  0.356
2018 Rosenbaum JN, Bloom R, Forys JT, Hiken J, Armstrong JR, Branson J, McNulty S, Velu PD, Pepin K, Abel H, Cottrell CE, Pfeifer JD, Kulkarni S, Govindan R, Konnick EQ, et al. Genomic heterogeneity of ALK fusion breakpoints in non-small-cell lung cancer. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. PMID 29327716 DOI: 10.1038/Modpathol.2017.181  0.371
2017 Lee PJ, Yoo NS, Hagemann IS, Pfeifer JD, Cottrell CE, Abel HJ, Duncavage EJ. Spectrum of Mutations in Leiomyosarcomas Identified By Clinical Targeted Next-Generation Sequencing. Experimental and Molecular Pathology. PMID 28093192 DOI: 10.1016/J.Yexmp.2017.01.012  0.465
2016 Ganel L, Abel HJ, Consortium F, Hall IM. SVScore: An Impact Prediction Tool For Structural Variation. Bioinformatics (Oxford, England). PMID 28031184 DOI: 10.1093/Bioinformatics/Btw789  0.381
2016 Duncavage EJ, Abel HJ, Pfeifer JD. In Silico Proficiency Testing for Clinical Next-Generation Sequencing. The Journal of Molecular Diagnostics : Jmd. PMID 27863262 DOI: 10.1016/J.Jmoldx.2016.09.005  0.427
2016 Druley TE, Wang L, Lin SJ, Lee JH, Zhang Q, Daw EW, Abel HJ, Chasnoff SE, Ramos EI, Levinson BT, Thyagarajan B, Newman AB, Christensen K, Mayeux R, Province MA. Candidate gene resequencing to identify rare, pedigree-specific variants influencing healthy aging phenotypes in the long life family study. Bmc Geriatrics. 16: 80. PMID 27060904 DOI: 10.1186/S12877-016-0253-Y  0.319
2015 Sehn JK, Spencer DH, Pfeifer JD, Bredemeyer AJ, Cottrell CE, Abel HJ, Duncavage EJ. Occult Specimen Contamination in Routine Clinical Next-Generation Sequencing Testing. American Journal of Clinical Pathology. 144: 667-74. PMID 26386089 DOI: 10.1309/Ajcpr88Wdjjldmbn  0.412
2015 Sufficool KE, Lockwood CM, Abel HJ, Hagemann IS, Schumacher JA, Kelley TW, Duncavage EJ. T-cell clonality assessment by next-generation sequencing improves detection sensitivity in mycosis fungoides. Journal of the American Academy of Dermatology. 73: 228-36.e2. PMID 26048061 DOI: 10.1016/J.Jaad.2015.04.030  0.376
2015 Hirbe AC, Dahiya S, Miller CA, Li T, Fulton RS, Zhang X, McDonald S, DeSchryver K, Duncavage EJ, Walrath J, Reilly KM, Abel HJ, Pekmezci M, Perry A, Ley TJ, et al. Whole Exome Sequencing Reveals the Order of Genetic Changes during Malignant Transformation and Metastasis in a Single Patient with NF1-plexiform Neurofibroma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 25925892 DOI: 10.1158/1078-0432.Ccr-14-3049  0.312
2015 Cimino PJ, Bredemeyer A, Abel HJ, Duncavage EJ. A wide spectrum of EGFR mutations in glioblastoma is detected by a single clinical oncology targeted next-generation sequencing panel. Experimental and Molecular Pathology. 98: 568-73. PMID 25910966 DOI: 10.1016/J.Yexmp.2015.04.006  0.49
2015 Gomez F, Wang L, Abel H, Zhang Q, Province MA, Borecki IB. Admixture mapping of coronary artery calcification in African Americans from the NHLBI family heart study. Bmc Genetics. 16: 42. PMID 25902833 DOI: 10.1186/S12863-015-0196-X  0.34
2015 Zhang Q, Abel H, Wells A, Lenzini P, Gomez F, Province MA, Templeton AA, Weinstock GM, Salzman NH, Borecki IB. Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data. Bioinformatics (Oxford, England). 31: 1607-13. PMID 25568281 DOI: 10.1093/Bioinformatics/Btu855  0.313
2014 Parker MM, Foreman MG, Abel HJ, Mathias RA, Hetmanski JB, Crapo JD, Silverman EK, Beaty TH. Admixture mapping identifies a quantitative trait locus associated with FEV1/FVC in the COPDGene Study Genetic Epidemiology. 38: 652-659. PMID 25112515 DOI: 10.1002/Gepi.21847  0.324
2014 Sehn JK, Abel HJ, Duncavage EJ. Copy number variants in clinical next-generation sequencing data can define the relationship between simultaneous tumors in an individual patient. Experimental and Molecular Pathology. 97: 69-73. PMID 24886963 DOI: 10.1016/J.Yexmp.2014.05.008  0.465
2014 Abel HJ, Al-Kateb H, Cottrell CE, Bredemeyer AJ, Pritchard CC, Grossmann AH, Wallander ML, Pfeifer JD, Lockwood CM, Duncavage EJ. Detection of gene rearrangements in targeted clinical next-generation sequencing. The Journal of Molecular Diagnostics : Jmd. 16: 405-17. PMID 24813172 DOI: 10.1016/J.Jmoldx.2014.03.006  0.439
2014 Cimino PJ, Robirds DH, Tripp SR, Pfeifer JD, Abel HJ, Duncavage EJ. Retinoblastoma gene mutations detected by whole exome sequencing of Merkel cell carcinoma. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 27: 1073-87. PMID 24406863 DOI: 10.1038/Modpathol.2013.235  0.357
2014 Cottrell CE, Al-Kateb H, Bredemeyer AJ, Duncavage EJ, Spencer DH, Abel HJ, Lockwood CM, Hagemann IS, O'Guin SM, Burcea LC, Sawyer CS, Oschwald DM, Stratman JL, Sher DA, Johnson MR, et al. Validation of a next-generation sequencing assay for clinical molecular oncology. The Journal of Molecular Diagnostics : Jmd. 16: 89-105. PMID 24211365 DOI: 10.1016/J.Jmoldx.2013.10.002  0.49
2013 Abel HJ, Duncavage EJ. Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches. Cancer Genetics. 206: 432-40. PMID 24405614 DOI: 10.1016/J.Cancergen.2013.11.002  0.489
2013 Spencer DH, Sehn JK, Abel HJ, Watson MA, Pfeifer JD, Duncavage EJ. Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens. The Journal of Molecular Diagnostics : Jmd. 15: 623-33. PMID 23810758 DOI: 10.1016/j.jmoldx.2013.05.004  0.335
2013 Spencer DH, Abel HJ, Lockwood CM, Payton JE, Szankasi P, Kelley TW, Kulkarni S, Pfeifer JD, Duncavage EJ. Detection of FLT3 internal tandem duplication in targeted, short-read-length, next-generation sequencing data. The Journal of Molecular Diagnostics : Jmd. 15: 81-93. PMID 23159595 DOI: 10.1016/J.Jmoldx.2012.08.001  0.478
2012 Knight S, Abo RP, Abel HJ, Neklason DW, Tuohy TM, Burt RW, Thomas A, Camp NJ. Shared genomic segment analysis: the power to find rare disease variants. Annals of Human Genetics. 76: 500-9. PMID 22989048 DOI: 10.1111/J.1469-1809.2012.00728.X  0.382
2012 Duncavage EJ, Abel HJ, Szankasi P, Kelley TW, Pfeifer JD. Targeted next generation sequencing of clinically significant gene mutations and translocations in leukemia. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 25: 795-804. PMID 22425908 DOI: 10.1038/Modpathol.2012.29  0.469
2011 Abel HJ, Thomas A. Case-control association testing by graphical modeling for the Genetic Analysis Workshop 17 mini-exome sequence data. Bmc Proceedings. 5: S62. PMID 22373360 DOI: 10.1186/1753-6561-5-S9-S62  0.391
2011 Thomas A, Abel HJ, Di Y, Faye LL, Jin J, Liu J, Wu Z, Paterson AD. Effect of linkage disequilibrium on the identification of functional variants. Genetic Epidemiology. 35: S115-9. PMID 22128051 DOI: 10.1002/Gepi.20660  0.391
2011 Duncavage EJ, Magrini V, Becker N, Armstrong JR, Demeter RT, Wylie T, Abel HJ, Pfeifer JD. Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue. The Journal of Molecular Diagnostics : Jmd. 13: 325-33. PMID 21497292 DOI: 10.1016/j.jmoldx.2011.01.006  0.359
2011 Spencer DH, Abel H, Szankasi P, Kelley TW, Kulkarni S, Watson MA, Pfeifer JD, Duncavage EJ. Detection of FLT3 Internal Tandem Duplications in Acute Myeloid Leukemia by Targeted Multi-Gene Next Generation Sequencing, Blood. 118: 3547-3547. DOI: 10.1182/Blood.V118.21.3547.3547  0.505
2010 Abel HJ, Duncavage EJ, Becker N, Armstrong JR, Magrini VJ, Pfeifer JD. SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data. Bioinformatics (Oxford, England). 26: 2684-8. PMID 20876606 DOI: 10.1093/Bioinformatics/Btq528  0.477
2010 Duncavage EJ, Abel H, Armstrong J, South S, Pfeifer JD. Next Generation Sequencing Based Identification of Translocations In Clinical Acute Myeloid Leukemia Specimens Blood. 116: 581-581. DOI: 10.1182/Blood.V116.21.581.581  0.465
Low-probability matches (unlikely to be authored by this person)
2022 Yin X, Chan LS, Bose D, Jackson AU, VandeHaar P, Locke AE, Fuchsberger C, Stringham HM, Welch R, Yu K, Fernandes Silva L, Service SK, Zhang D, Hector EC, Young E, ... ... Abel H, et al. Genome-wide association studies of metabolites in Finnish men identify disease-relevant loci. Nature Communications. 13: 1644. PMID 35347128 DOI: 10.1038/s41467-022-29143-5  0.284
2023 Slade MJ, Ghasemi R, O'Laughlin M, Burton T, Fulton RS, Abel HJ, Duncavage EJ, Ley TJ, Jacoby MA, Spencer DH. Persistent Molecular Disease in Adult Patients With AML Evaluated With Whole-Exome and Targeted Error-Corrected DNA Sequencing. Jco Precision Oncology. 7: e2200559. PMID 37079859 DOI: 10.1200/PO.22.00559  0.27
2016 Duncavage EJ, Abel HJ, Merker JD, Bodner JB, Zhao Q, Voelkerding KV, Pfeifer JD. A Model Study of In Silico Proficiency Testing for Clinical Next-Generation Sequencing. Archives of Pathology & Laboratory Medicine. PMID 27388684 DOI: 10.5858/Arpa.2016-0194-Cp  0.259
2021 Ganel L, Chen L, Christ R, Vangipurapu J, Young E, Das I, Kanchi K, Larson D, Regier A, Abel H, Kang CJ, Scott A, Havulinna A, Chiang CWK, Service S, et al. Mitochondrial genome copy number measured by DNA sequencing in human blood is strongly associated with metabolic traits via cell-type composition differences. Human Genomics. 15: 34. PMID 34099068 DOI: 10.1186/s40246-021-00335-2  0.255
2011 Abel HJ, Thomas A. Accuracy and computational efficiency of a graphical modeling approach to linkage disequilibrium estimation. Statistical Applications in Genetics and Molecular Biology. 10: Article 5. PMID 21291415 DOI: 10.2202/1544-6115.1615  0.25
2021 Smith AM, LaValle TA, Shinawi M, Ramakrishnan SM, Abel HJ, Hill CA, Kirkland NM, Rettig MP, Helton NM, Heath SE, Ferraro F, Chen DY, Adak S, Semenkovich CF, Christian DL, et al. Functional and epigenetic phenotypes of humans and mice with DNMT3A Overgrowth Syndrome. Nature Communications. 12: 4549. PMID 34315901 DOI: 10.1038/s41467-021-24800-7  0.246
2022 Smith AM, Verdoni AM, Abel HJ, Chen DY, Ketkar S, Leight ER, Miller CA, Ley TJ. Somatic inactivation leads to slow, canonical DNA methylation loss in murine hematopoietic cells. Iscience. 25: 104004. PMID 35313694 DOI: 10.1016/j.isci.2022.104004  0.205
2024 Li Y, Abel HJ, Cai M, LaValle TA, Yin T, Helton NM, Smith AM, Miller CA, Ley TJ. Rapid and accurate remethylation of DNA in deficient hematopoietic cells with restoration of DNMT3A activity. Science Advances. 10: eadk8598. PMID 38295174 DOI: 10.1126/sciadv.adk8598  0.181
2002 Rodehutscord M, Abel HJ, Friedt W, Wenk C, Flachowsky G, Ahlgrimm HJ, Johnke B, Kühl R, Breves G. Consequences of the ban of by-products from terrestrial animals in livestock feeding in Germany and the European Union: alternatives, nutrient and energy cycles, plant production, and economic aspects. Archiv FüR TierernäHrung. 56: 67-91. PMID 12389223 DOI: 10.1080/00039420214180  0.084
2015 Sun F, Sebastiani P, Schupf N, Bae H, Andersen SL, McIntosh A, Abel H, Elo IT, Perls TT. Extended maternal age at birth of last child and women's longevity in the Long Life Family Study. Menopause (New York, N.Y.). 22: 26-31. PMID 24977462 DOI: 10.1097/Gme.0000000000000276  0.042
2002 Geisert EE, Abel HJ, Fan L, Geisert GR. Retinal pigment epithelium of the rat express CD81, the target of the anti-proliferative antibody (TAPA). Investigative Ophthalmology & Visual Science. 43: 274-80. PMID 11773042  0.036
2005 Gaye-Siessegger J, Focken U, Abel HJ, Becker K. Improving estimates of trophic shift in Nile tilapia, Oreochromis niloticus (L.), using measurements of lipogenic enzyme activities in the liver. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 140: 117-24. PMID 15664320 DOI: 10.1016/j.cbpb.2004.11.011  0.036
2004 Abel HJ, Lee JC, Callaway JC, Foehring RC. Relationships between intracellular calcium and afterhyperpolarizations in neocortical pyramidal neurons. Journal of Neurophysiology. 91: 324-35. PMID 12917389 DOI: 10.1152/Jn.00583.2003  0.032
2003 Gaye-Siessegger J, Focken U, Abel HJ, Becker K. Feeding level and diet quality influence trophic shift of C and N isotopes in Nile tilapia (Oreochromis niloticus (L.)). Isotopes in Environmental and Health Studies. 39: 125-34. PMID 12872804 DOI: 10.1080/1025601031000113556  0.028
2008 Janssen H, Meyer U, Spolders M, Flachowsky G, Abel HJ. Effect of different feeding intensity on feed intake, live weight gain, various body traits as well as the energy utilization for weight gain in female calves and heifers | Einfluss unterschiedlicher fütterungsintensitäten auf die futteraufnahme, die entwicklung der lebendmasse und ausgewählter körpermaße sowie den energieaufwand für die lebendmassezunahme bei weiblichen kälbern und aufzuchtrindern Zuchtungskunde. 80: 233-246.  0.021
2010 von Heimendahl E, Breves G, Abel HJ. Fiber-related digestive processes in three different breeds of pigs. Journal of Animal Science. 88: 972-81. PMID 19933429 DOI: 10.2527/jas.2009-2370  0.02
1986 Abel HJ. Influence of Condensed Water on the Corrosion Resistance of Structural Parts - Channels, Chutes, Facades. | KORROSIONSVERHALTEN VON KONSTRUKTIONSTEILEN MIT KONDENSWASSERBELASTUNG - KANAELE, SCHAECHTE, FASSADEN. Werkstoffe Und Korrosion. 37: 330-332.  0.017
1975 Abel HJ, Molnar S, Günther K. [Effect of various nutritional energy sources on ruminal and carcass lipid composition in fattening bulls]. Zeitschrift FüR Tierphysiologie, TierernäHrung Und Futtermittelkunde. 34: 170-8. PMID 1130143  0.015
2002 Abel Hj, Burghard G. [The feed value in growing pigs of a new cultivar of field beans (Vicia faba L.) supplemented with DL-methionine or DL-methionine-hydroxyanalog]. Journal of Animal Physiology and Animal Nutrition. 86: 26-35. PMID 11906570  0.01
2001 Abel HJ, Brill U, Haubold TI, Klauke P. Corrosion behaviour of gas turbine alloys under high velocity burnt fuels | Korrosionsverhalten von gasturbinenwerkstoffen unter strömenden heißgasbedingungen Werkstoffe Und Korrosion. 52: 283-288.  0.01
1984 Abel HJ, Becker K, Meske CHR, Friedrich W. Possibilities of using heat-treated full-fat soybeans in carp feeding Aquaculture. 42: 97-108. DOI: 10.1016/0044-8486(84)90357-0  0.01
1982 Abel HJ, Kruse CL. Investigation of the Effect of Galvanic Corrosion Between Steel in Concrete and Steel in Soil. | UNTERSUCHUNG UEBER DIE AUSWIRKUNG DER ELEMENTBILDUNG SWISCHEN STAHL IN BETON UND STAHL IN ERDBODEN. Werkstoffe Und Korrosion. 33: 89-93.  0.01
1975 Abel HJ, Rosenow H, Molnar S. [Role of liver lipogenesis of growing rats and fattening chickens. 4. Metabolic pathways of glucose in lipogenetic active liver of rats and fattening chickens]. Zeitschrift FüR Tierphysiologie, TierernäHrung Und Futtermittelkunde. 34: 135-40. PMID 1130140  0.01
1975 Abel HJ, Rosenow H, Molnar S. [Role of liver in lipogenesis of growing rats and fattening chickens. 3. Enzyme activities in lipid and carbohydrate metabolism in rat and chicken liver]. Zeitschrift FüR Tierphysiologie, TierernäHrung Und Futtermittelkunde. 34: 129-34. PMID 1130139  0.01
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