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Matthew C. McClure, Ph.D. - Publications

Affiliations: 
2009 University of Missouri - Columbia, Columbia, MO, United States 
Area:
genomics, quantitative genetics, population genetics
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Johnston D, Mukiibi R, Waters SM, McGee M, Surlis C, McClure JC, McClure MC, Todd CG, Earley B. Genome wide association study of passive immunity and disease traits in beef-suckler and dairy calves on Irish farms. Scientific Reports. 10: 18998. PMID 33149185 DOI: 10.1038/s41598-020-75870-4  0.342
2019 Jenko J, McClure MC, Matthews D, McClure J, Johnsson M, Gorjanc G, Hickey JM. Analysis of a large dataset reveals haplotypes carrying putatively recessive lethal and semi-lethal alleles with pleiotropic effects on economically important traits in beef cattle. Genetics, Selection, Evolution : Gse. 51: 9. PMID 30836944 DOI: 10.1186/S12711-019-0452-Z  0.353
2018 Higgins MG, Fitzsimons C, McClure MC, McKenna C, Conroy S, Kenny DA, McGee M, Waters SM, Morris DW. GWAS and eQTL analysis identifies a SNP associated with both residual feed intake and GFRA2 expression in beef cattle. Scientific Reports. 8: 14301. PMID 30250203 DOI: 10.1038/s41598-018-32374-6  0.486
2018 McClure MC, McCarthy J, Flynn P, McClure JC, Dair E, O'Connell DK, Kearney JF. SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification. Frontiers in Genetics. 9: 84. PMID 29599798 DOI: 10.3389/Fgene.2018.00084  0.543
2017 Williams JL, Iamartino D, Pruitt KD, Sonstegard T, Smith TPL, Low WY, Biagini T, Bomba L, Capomaccio S, Castiglioni B, Coletta A, Corrado F, Ferré F, Iannuzzi L, Lawley C, ... ... McClure M, et al. Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50). Gigascience. PMID 29048578 DOI: 10.1093/Gigascience/Gix088  0.419
2017 Berry DP, Wolfe A, O'Donovan J, Byrne N, Sayers RG, Dodds KG, McEwan JC, O'Connor RE, McClure M, Purfield DC. Characterization of an X-chromosomal non-mosaic monosomy (59, X0) dairy heifer detected using routinely available single nucleotide polymorphism genotype data. Journal of Animal Science. 95: 1042-1049. PMID 28380529 DOI: 10.2527/Jas.2016.1279  0.443
2017 Ratcliffe L, Mullen M, McClure MC, McClure J, Kearney F. 190 Single nucleotide polymorphisms in the signal transducer and regulator of transcription (STAT) genes are associated with milk production, milk composition, and fertility traits in Holstein Friesian cattle Journal of Animal Science. 95: 94-94. DOI: 10.2527/Asasann.2017.190  0.371
2017 Ratcliffe L, Mullen M, Kearney F, McClure MC, McClure J. 076 Estimation of the effects of mutations causing complex vertebral malformation and brachyspina on milk production, milk composition, and fertility traits in Holstein Friesian dairy cattle. Journal of Animal Science. 95: 38-38. DOI: 10.2527/Asasann.2017.076  0.311
2016 Purfield DC, McClure M, Berry DP. Justification for setting the individual animal genotype call rate threshold at eighty-five percent. Journal of Animal Science. 94: 4558-4569. PMID 27898963 DOI: 10.2527/Jas.2016-0802  0.368
2016 Judge MM, Kearney JF, McClure MC, Sleator RD, Berry DP. Evaluation of developed low-density genotype panels for imputation to higher density in independent dairy and beef cattle populations. Journal of Animal Science. 94: 949-62. PMID 27065257 DOI: 10.2527/Jas.2015-0044  0.538
2016 McClure MC, Mullen M, Waters SM, Kearney F, McClure J, Flynn P, Weld R. P6001 Effectively managing bovine genetic disease risk via genotyping the Irish national herd. Journal of Animal Science. 94: 148-148. DOI: 10.2527/Jas2016.94Supplement4148X  0.305
2016 Cromie A, Evans R, Kearney F, Berry D, McClure MC, McCarthy J. 0410 Multi-breed genomic evaluations for 1 million beef cattle in Ireland. Journal of Animal Science. 94: 199-199. DOI: 10.2527/Jam2016-0410  0.475
2016 Purfield DC, McClure MC, Berry DP. 0295 The impact of call rate on genotype accuracy. Journal of Animal Science. 94: 140-141. DOI: 10.2527/Jam2016-0295  0.32
2014 Berry DP, McClure MC, Mullen MP. Within- and across-breed imputation of high-density genotypes in dairy and beef cattle from medium- and low-density genotypes. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 131: 165-72. PMID 24906026 DOI: 10.1111/Jbg.12067  0.453
2014 Huson HJ, Kim ES, Godfrey RW, Olson TA, McClure MC, Chase CC, Rizzi R, O'Brien AM, Van Tassell CP, Garcia JF, Sonstegard TS. Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle. Frontiers in Genetics. 5: 101. PMID 24808908 DOI: 10.3389/Fgene.2014.00101  0.526
2014 McClure MC, Bickhart D, Null D, Vanraden P, Xu L, Wiggans G, Liu G, Schroeder S, Glasscock J, Armstrong J, Cole JB, Van Tassell CP, Sonstegard TS. Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3. Plos One. 9: e92769. PMID 24667746 DOI: 10.1371/Journal.Pone.0092769  0.513
2014 McClure MC, Bickhart D, Null D, VanRaden P, Xu L, Wiggans G, Liu G, Schroeder S, Glasscock J, Armstrong J, Cole JB, Tassell CPV, Sonstegard TS. Count of heterozygous SV discovered in concordance with haplotype carrier status. Plos One. DOI: 10.1371/Journal.Pone.0092769.T002  0.346
2014 McClure MC, Bickhart D, Null D, VanRaden P, Xu L, Wiggans G, Liu G, Schroeder S, Glasscock J, Armstrong J, Cole JB, Tassell CPV, Sonstegard TS. Average genome-wide and refined haplotype sequence read depth from exome capture. Plos One. DOI: 10.1371/Journal.Pone.0092769.T001  0.468
2013 McClure MC, Sonstegard TS, Wiggans GR, Van Eenennaam AL, Weber KL, Penedo CT, Berry DP, Flynn J, Garcia JF, Carmo AS, Regitano LC, Albuquerque M, Silva MV, Machado MA, Coffey M, et al. Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds. Frontiers in Genetics. 4: 176. PMID 24065982 DOI: 10.3389/Fgene.2013.00176  0.584
2013 McClure M, Kim E, Bickhart D, Null D, Cooper T, Cole J, Wiggans G, Ajmone-Marsan P, Colli L, Santus E, Liu GE, Schroeder S, Matukumalli L, Van Tassell C, Sonstegard T. Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2. Plos One. 8: e59251. PMID 23527149 DOI: 10.1371/Journal.Pone.0059251  0.508
2013 Sonstegard TS, Cole JB, VanRaden PM, Van Tassell CP, Null DJ, Schroeder SG, Bickhart D, McClure MC. Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle. Plos One. 8: e54872. PMID 23349982 DOI: 10.1371/Journal.Pone.0054872  0.501
2012 Decker JE, Vasco DA, McKay SD, McClure MC, Rolf MM, Kim J, Northcutt SL, Bauck S, Woodward BW, Schnabel RD, Taylor JF. A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits. Bmc Genomics. 13: 606. PMID 23140540 DOI: 10.1186/1471-2164-13-606  0.749
2012 McClure M, Sonstegard T, Wiggans G, Van Tassell CP. Imputation of microsatellite alleles from dense SNP genotypes for parental verification. Frontiers in Genetics. 3: 140. PMID 22912645 DOI: 10.3389/Fgene.2012.00140  0.471
2012 Rolf MM, Taylor JF, Schnabel RD, McKay SD, McClure MC, Northcutt SL, Kerley MS, Weaber RL. Genome-wide association analysis for feed efficiency in Angus cattle. Animal Genetics. 43: 367-74. PMID 22497295 DOI: 10.1111/J.1365-2052.2011.02273.X  0.775
2012 McClure MC, Ramey HR, Rolf MM, McKay SD, Decker JE, Chapple RH, Kim JW, Taxis TM, Weaber RL, Schnabel RD, Taylor JF. Genome-wide association analysis for quantitative trait loci influencing Warner-Bratzler shear force in five taurine cattle breeds. Animal Genetics. 43: 662-73. PMID 22497286 DOI: 10.1111/J.1365-2052.2012.02323.X  0.778
2012 McClure M, Sonstegard T, Wiggans G, Van Tassell CP. Imputation of microsatellite alleles from dense SNP genotypes for parental verification Frontiers in Genetics. 3. DOI: 10.3389/fgene.2012.00140  0.317
2011 Saatchi M, McClure MC, McKay SD, Rolf MM, Kim J, Decker JE, Taxis TM, Chapple RH, Ramey HR, Northcutt SL, Bauck S, Woodward B, Dekkers JC, Fernando RL, Schnabel RD, et al. Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation. Genetics, Selection, Evolution : Gse. 43: 40. PMID 22122853 DOI: 10.1186/1297-9686-43-40  0.73
2011 Chung H, McClure MC. Characterization of microsatellite loci in the SLA class I region. Genomics. 97: 223-34. PMID 21195162 DOI: 10.1016/J.Ygeno.2010.12.006  0.376
2011 Chung H, McClure MC. Effects of SNPs from the differentially expressed swine odorant binding protein gene on average daily gain Journal of Applied Animal Research. 39: 61-64. DOI: 10.1080/09712119.2011.565221  0.483
2011 Chung H, McClure M, Kim J. Phylogenetic analysis of the swine leukocyte antigen - 2 gene for Korean native pigs Genes and Genomics. 33: 349-355. DOI: 10.1007/S13258-010-0112-8  0.505
2010 McClure MC, Morsci NS, Schnabel RD, Kim JW, Yao P, Rolf MM, McKay SD, Gregg SJ, Chapple RH, Northcutt SL, Taylor JF. A genome scan for quantitative trait loci influencing carcass, post-natal growth and reproductive traits in commercial Angus cattle. Animal Genetics. 41: 597-607. PMID 20477797 DOI: 10.1111/J.1365-2052.2010.02063.X  0.745
2010 Rolf MM, Taylor JF, Schnabel RD, McKay SD, McClure MC, Northcutt SL, Kerley MS, Weaber RL. Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. Bmc Genetics. 11: 24. PMID 20403185 DOI: 10.1186/1471-2156-11-24  0.747
2009 Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, ... ... McClure MC, et al. Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proceedings of the National Academy of Sciences of the United States of America. 106: 18644-9. PMID 19846765 DOI: 10.1073/Pnas.0904691106  0.735
2009 McClure MC, McKay SD, Schnabel RD, Taylor JF. Assessment of DNA extracted from FTA cards for use on the Illumina iSelect BeadChip. Bmc Research Notes. 2: 107. PMID 19531223 DOI: 10.1186/1756-0500-2-107  0.456
2007 Sellner EM, Kim JW, McClure MC, Taylor KH, Schnabel RD, Taylor JF. Board-invited review: Applications of genomic information in livestock. Journal of Animal Science. 85: 3148-58. PMID 17709778 DOI: 10.2527/Jas.2007-0291  0.647
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