| Year |
Citation |
Score |
| 2022 |
Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Plotgardener: Cultivating precise multi-panel figures in R. Bioinformatics (Oxford, England). PMID 35134826 DOI: 10.1093/bioinformatics/btac057 |
0.629 |
|
| 2019 |
Patwardhan MN, Wenger CD, Davis ES, Phanstiel DH. Bedtoolsr: An R package for genomic data analysis and manipulation. Journal of Open Source Software. 4. PMID 31903447 DOI: 10.21105/joss.01742 |
0.623 |
|
| 2017 |
Li Q, Shortreed MR, Wenger CD, Frey BL, Schaffer LV, Scalf M, Smith LM. Global Post-Translational Modification Discovery. Journal of Proteome Research. PMID 28248113 DOI: 10.1021/Acs.Jproteome.6B00034 |
0.439 |
|
| 2015 |
Shortreed MR, Wenger CD, Frey BL, Sheynkman GM, Scalf M, Keller MP, Attie AD, Smith LM. Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search. Journal of Proteome Research. 14: 4714-20. PMID 26418581 DOI: 10.1021/Acs.Jproteome.5B00599 |
0.442 |
|
| 2013 |
Hebert AS, Merrill AE, Stefely JA, Bailey DJ, Wenger CD, Westphall MS, Pagliarini DJ, Coon JJ. Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation. Molecular & Cellular Proteomics : McP. 12: 3360-9. PMID 23882030 DOI: 10.1074/Mcp.M113.032011 |
0.778 |
|
| 2013 |
Lee HY, Haurwitz RE, Apffel A, Zhou K, Smart B, Wenger CD, Laderman S, Bruhn L, Doudna JA. RNA-protein analysis using a conditional CRISPR nuclease. Proceedings of the National Academy of Sciences of the United States of America. 110: 5416-21. PMID 23493562 DOI: 10.1073/Pnas.1302807110 |
0.349 |
|
| 2013 |
Wenger CD, Coon JJ. A proteomics search algorithm specifically designed for high-resolution tandem mass spectra. Journal of Proteome Research. 12: 1377-86. PMID 23323968 DOI: 10.1021/Pr301024C |
0.662 |
|
| 2012 |
Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ. Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 109: 8411-6. PMID 22586074 DOI: 10.1073/Pnas.1205292109 |
0.778 |
|
| 2012 |
Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ. Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD). Journal of the American Society For Mass Spectrometry. 23: 718-27. PMID 22290482 DOI: 10.1007/S13361-011-0331-5 |
0.771 |
|
| 2011 |
Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nature Methods. 8: 821-7. PMID 21983960 DOI: 10.1038/Nmeth.1699 |
0.747 |
|
| 2011 |
Wenger CD, Lee MV, Hebert AS, McAlister GC, Phanstiel DH, Westphall MS, Coon JJ. Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nature Methods. 8: 933-5. PMID 21963608 DOI: 10.1038/Nmeth.1716 |
0.739 |
|
| 2011 |
Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ, Gasch AP. A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Molecular Systems Biology. 7: 514. PMID 21772262 DOI: 10.1038/Msb.2011.48 |
0.715 |
|
| 2011 |
Xia Q, Lee MV, Rose CM, Marsh AJ, Hubler SL, Wenger CD, Coon JJ. Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation. Journal of the American Society For Mass Spectrometry. 22: 255-64. PMID 21472585 DOI: 10.1007/S13361-010-0029-0 |
0.742 |
|
| 2011 |
Wenger CD, Phanstiel DH, Lee MV, Bailey DJ, Coon JJ. COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA. Proteomics. 11: 1064-74. PMID 21298793 DOI: 10.1002/Pmic.201000616 |
0.78 |
|
| 2010 |
Xia Q, Good DM, Wenger CD, Coon JJ. Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events. Rapid Communications in Mass Spectrometry : Rcm. 24: 3217-8. PMID 20941771 DOI: 10.1002/Rcm.4743 |
0.557 |
|
| 2010 |
Wenger CD, McAlister GC, Xia Q, Coon JJ. Sub-part-per-million precursor and product mass accuracy for high-throughput proteomics on an electron transfer dissociation-enabled orbitrap mass spectrometer. Molecular & Cellular Proteomics : McP. 9: 754-63. PMID 20124352 DOI: 10.1074/Mcp.M900541-Mcp200 |
0.771 |
|
| 2010 |
Swaney DL, Wenger CD, Coon JJ. Value of using multiple proteases for large-scale mass spectrometry-based proteomics. Journal of Proteome Research. 9: 1323-9. PMID 20113005 DOI: 10.1021/Pr900863U |
0.766 |
|
| 2010 |
Grimsrud PA, Swaney DL, Wenger CD, Beauchene NA, Coon JJ. Phosphoproteomics for the masses. Acs Chemical Biology. 5: 105-19. PMID 20047291 DOI: 10.1021/Cb900277E |
0.723 |
|
| 2010 |
McAlister GC, Phanstiel D, Wenger CD, Lee MV, Coon JJ. Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification. Analytical Chemistry. 82: 316-22. PMID 19938823 DOI: 10.1021/Ac902005S |
0.766 |
|
| 2010 |
Grimsrud PA, den Os D, Wenger CD, Swaney DL, Schwartz D, Sussman MR, Ané JM, Coon JJ. Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiology. 152: 19-28. PMID 19923235 DOI: 10.1104/Pp.109.149625 |
0.702 |
|
| 2010 |
Good DM, Wenger CD, Coon JJ. The effect of interfering ions on search algorithm performance for electron-transfer dissociation data. Proteomics. 10: 164-7. PMID 19899080 DOI: 10.1002/Pmic.200900570 |
0.59 |
|
| 2009 |
Ferguson JT, Wenger CD, Metcalf WW, Kelleher NL. Top-down proteomics reveals novel protein forms expressed in Methanosarcina acetivorans. Journal of the American Society For Mass Spectrometry. 20: 1743-50. PMID 19577935 DOI: 10.1016/J.Jasms.2009.05.014 |
0.478 |
|
| 2009 |
Good DM, Wenger CD, McAlister GC, Bai DL, Hunt DF, Coon JJ. Post-acquisition ETD spectral processing for increased peptide identifications. Journal of the American Society For Mass Spectrometry. 20: 1435-40. PMID 19362853 DOI: 10.1016/J.Jasms.2009.03.006 |
0.788 |
|
| 2009 |
Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 995-1000. PMID 19144917 DOI: 10.1073/Pnas.0811964106 |
0.719 |
|
| 2009 |
Boyne MT, Garcia BA, Li M, Zamdborg L, Wenger CD, Babai S, Kelleher NL. Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval. Journal of Proteome Research. 8: 374-9. PMID 19053528 DOI: 10.1021/Pr800635M |
0.524 |
|
| 2008 |
Wenger CD, Boyne MT, Ferguson JT, Robinson DE, Kelleher NL. Versatile online-offline engine for automated acquisition of high-resolution tandem mass spectra. Analytical Chemistry. 80: 8055-63. PMID 18841935 DOI: 10.1021/Ac8010704 |
0.536 |
|
| 2008 |
Krusemark CJ, Ferguson JT, Wenger CD, Kelleher NL, Belshaw PJ. Global amine and acid functional group modification of proteins. Analytical Chemistry. 80: 713-20. PMID 18184016 DOI: 10.1021/Ac7019317 |
0.439 |
|
| 2007 |
Astle J, Ferguson JT, German JB, Harrigan GG, Kelleher NL, Kodadek T, Parks BA, Roth MJ, Singletary KW, Wenger CD, Mahady GB. Characterization of proteomic and metabolomic responses to dietary factors and supplements. The Journal of Nutrition. 137: 2787-93. PMID 18029500 DOI: 10.1093/Jn/137.12.2787 |
0.317 |
|
| 2007 |
Parks BA, Jiang L, Thomas PM, Wenger CD, Roth MJ, Boyne MT, Burke PV, Kwast KE, Kelleher NL. Top-down proteomics on a chromatographic time scale using linear ion trap fourier transform hybrid mass spectrometers. Analytical Chemistry. 79: 7984-91. PMID 17915963 DOI: 10.1021/Ac070553T |
0.516 |
|
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