Benjamin J. Callahan, Ph.D. - Publications

Affiliations: 
2009 Physics University of California, Santa Barbara, Santa Barbara, CA, United States 

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kolodny O, Callahan BJ, Douglas AE. The role of the microbiome in host evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190588. PMID 32772663 DOI: 10.1098/Rstb.2019.0588  0.307
2019 Berman HL, McLaren MR, Callahan BJ. Understanding and Interpreting Community Sequencing Measurements of the Vaginal Microbiome. Bjog : An International Journal of Obstetrics and Gynaecology. PMID 31597208 DOI: 10.1111/1471-0528.15978  0.343
2019 McLaren MR, Willis AD, Callahan BJ. Consistent and correctable bias in metagenomic sequencing experiments. Elife. 8. PMID 31502536 DOI: 10.7554/Elife.46923  0.347
2019 Callahan BJ, Wong J, Heiner C, Oh S, Theriot CM, Gulati AS, McGill SK, Dougherty MK. High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution. Nucleic Acids Research. PMID 31269198 DOI: 10.1093/Nar/Gkz569  0.386
2018 Davis NM, Proctor DM, Holmes SP, Relman DA, Callahan BJ. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. Microbiome. 6: 226. PMID 30558668 DOI: 10.1186/S40168-018-0605-2  0.351
2018 McLaren MR, Callahan BJ. In Nature, There Is Only Diversity. Mbio. 9. PMID 29295915 DOI: 10.1128/Mbio.02149-17  0.339
2017 Callahan BJ, McMurdie PJ, Holmes SP. Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. The Isme Journal. PMID 28731476 DOI: 10.1038/Ismej.2017.119  0.387
2016 Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP. DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods. PMID 27214047 DOI: 10.1038/Nmeth.3869  0.362
2016 Bik EM, Costello EK, Switzer AD, Callahan BJ, Holmes SP, Wells RS, Carlin KP, Jensen ED, Venn-Watson S, Relman DA. Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea. Nature Communications. 7: 10516. PMID 26839246 DOI: 10.1038/Ncomms10516  0.303
2014 Callahan BJ, Fukami T, Fisher DS. Rapid evolution of adaptive niche construction in experimental microbial populations. Evolution; International Journal of Organic Evolution. 68: 3307-16. PMID 25138718 DOI: 10.1111/Evo.12512  0.338
2013 Walker SI, Callahan BJ, Arya G, Barry JD, Bhattacharya T, Grigoryev S, Pellegrini M, Rippe K, Rosenberg SM. Evolutionary dynamics and information hierarchies in biological systems. Annals of the New York Academy of Sciences. 1305: 1-17. PMID 23691975 DOI: 10.1111/Nyas.12140  0.321
2012 Rosen MJ, Callahan BJ, Fisher DS, Holmes SP. Denoising PCR-amplified metagenome data. Bmc Bioinformatics. 13: 283. PMID 23113967 DOI: 10.1186/1471-2105-13-283  0.336
2012 Callahan BJ. The length scale of selection in protein evolution. Fly. 6: 16-20. PMID 22198524 DOI: 10.4161/Fly.18305  0.369
2011 Sellis D, Callahan BJ, Petrov DA, Messer PW. Heterozygote advantage as a natural consequence of adaptation in diploids. Proceedings of the National Academy of Sciences of the United States of America. 108: 20666-71. PMID 22143780 DOI: 10.1073/Pnas.1114573108  0.302
2011 Callahan B, Neher RA, Bachtrog D, Andolfatto P, Shraiman BI. Correlated evolution of nearby residues in Drosophilid proteins. Plos Genetics. 7: e1001315. PMID 21383965 DOI: 10.1371/Journal.Pgen.1001315  0.526
2009 Callahan B, Thattai M, Shraiman BI. Emergent gene order in a model of modular polyketide synthases. Proceedings of the National Academy of Sciences of the United States of America. 106: 19410-5. PMID 19864629 DOI: 10.1073/Pnas.0902364106  0.525
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