El-Ad D. Amir, Ph.D. - Publications

Affiliations: 
2014 Biological Sciences Columbia University, New York, NY 
Area:
Computational Biology, Machine Learning, Biological Networks, Genomics and Systems Biology

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Steele NG, Carpenter ES, Kemp SB, Sirihorachai V, The S, Delrosario L, Lazarus J, Amir ED, Gunchick V, Espinoza C, Bell S, Harris L, Lima F, Irizarry-Negron V, Paglia D, et al. Multimodal Mapping of the Tumor and Peripheral Blood Immune Landscape in Human Pancreatic Cancer. Nature Cancer. 1: 1097-1112. PMID 34296197 DOI: 10.1038/s43018-020-00121-4  0.344
2019 Fernandez DM, Rahman AH, Fernandez NF, Chudnovskiy A, Amir ED, Amadori L, Khan NS, Wong CK, Shamailova R, Hill CA, Wang Z, Remark R, Li JR, Pina C, Faries C, et al. Single-cell immune landscape of human atherosclerotic plaques. Nature Medicine. PMID 31591603 DOI: 10.1038/S41591-019-0590-4  0.415
2019 Lee BH, Kelly G, Bradford S, Davila M, Guo XV, Amir ED, Thrash EM, Solga MD, Lannigan J, Sellers B, Candia J, Tsang J, Montgomery RR, Tamaki SJ, Sigdel TK, et al. A Modified Injector and Sample Acquisition Protocol Can Improve Data Quality and Reduce Inter-Instrument Variability of the Helios Mass Cytometer. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 31364278 DOI: 10.1002/Cyto.A.23866  0.328
2019 Hartmann FJ, Babdor J, Gherardini PF, Amir ED, Jones K, Sahaf B, Marquez DM, Krutzik P, O'Donnell E, Sigal N, Maecker HT, Meyer E, Spitzer MH, Bendall SC. Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy. Cell Reports. 28: 819-831.e4. PMID 31315057 DOI: 10.1016/J.Celrep.2019.06.049  0.4
2019 Amir ED, Lee B, Badoual P, Gordon M, Guo XV, Merad M, Rahman AH. Development of a Comprehensive Antibody Staining Database Using a Standardized Analytics Pipeline. Frontiers in Immunology. 10: 1315. PMID 31244854 DOI: 10.3389/Fimmu.2019.01315  0.38
2018 Wroblewska A, Dhainaut M, Ben-Zvi B, Rose SA, Park ES, Amir ED, Bektesevic A, Baccarini A, Merad M, Rahman AH, Brown BD. Protein Barcodes Enable High-Dimensional Single-Cell CRISPR Screens. Cell. PMID 30343902 DOI: 10.1016/J.Cell.2018.09.022  0.378
2018 Kosoy R, Kim-Schulze S, Rahman A, Peters LA, Amir E, Perrigoue J, Castillo A, Rogers J, Atreja A, Hurley A, merad m, Colombel JF, Dubinsky M, Friedman JR, Brodmerkel C, et al. 1009 - Immunophenotyping of Peripheral Whole Blood from 743 IBD Patients Identifies Patterns of Association Between Immune Cell Populations and T-Cell Subsets with Disease Occurrence, Severity and Medication Use Gastroenterology. 154: S-190. DOI: 10.1016/S0016-5085(18)31041-2  0.401
2017 Amir ED, Guo XV, Mayovska O, Rahman A. Average Overlap Frequency: A simple metric to evaluate staining quality and community identification in high dimensional mass cytometry experiments. Journal of Immunological Methods. PMID 28882613 DOI: 10.1016/J.Jim.2017.08.011  0.314
2017 Lavin Y, Kobayashi S, Leader A, Amir ED, Elefant N, Bigenwald C, Remark R, Sweeney R, Becker CD, Levine JH, Meinhof K, Chow A, Kim-Shulze S, Wolf A, Medaglia C, et al. Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses. Cell. 169: 750-765.e17. PMID 28475900 DOI: 10.1016/J.Cell.2017.04.014  0.559
2015 Levine JH, Simonds EF, Bendall SC, Davis KL, Amir ED, Tadmor MD, Litvin O, Fienberg HG, Jager A, Zunder ER, Finck R, Gedman AL, Radtke I, Downing JR, Pe'er D, et al. Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis. Cell. PMID 26095251 DOI: 10.1016/J.Cell.2015.05.047  0.621
2013 Amir ED, Litvin O, Levine J, Bendall SC, Davis KL, Simonds EF, Schild T, Rocco M, Rosen N, Nolan GP, Pe'er D. Abstract IA30: Towards rationale therapy: Dealing with intertumor and intratumor heterogeneity Cancer Research. 73. DOI: 10.1158/1538-7445.Fbcr13-Ia30  0.643
2013 Simonds EF, Bendall SC, Gedman AL, Levine JH, Davis KL, Fienberg HG, Jager A, Amir ED, Radtke I, Fantl WJ, Pe'er D, Downing JR, Nolan GP. Abstract 3178: Deep sequencing of immunophenotypically distinct subsets in acute myeloid leukemia reveals reservoirs of genetically distinct subclones along a conserved differentiation trajectory. Cancer Research. 73: 3178-3178. DOI: 10.1158/1538-7445.Am2013-3178  0.599
2012 Bendall SC, Amir ED, Tadmor M, Davis KL, Simonds EF, Shenfeld D, Levine J, Nolan GP, Pe'er D. Dimensionality Reduction Reveals Distinct Shapes of Normal and Malignant Hematopoietic Cell Populations Blood. 120: 1451-1451. DOI: 10.1182/Blood.V120.21.1451.1451  0.631
2012 Davis KL, Bendall SC, Amir ED, Simonds EF, Jager A, Trejo A, Pe'er D, Nolan GP. Single Cell Trajectory Detection Orders Hallmarks of Early Human B Cell Development Blood. 120: 1044-1044. DOI: 10.1182/Blood.V120.21.1044.1044  0.629
2011 Simonds EF, Bendall SC, Davis KL, Fienberg HG, Finck RL, Amir ED, Radtke I, Downing JR, Pe'er D, Nolan GP. Signaling and Immunophenotypic Diversity in Pediatric Acute Myeloid Leukemia As Defined by 31-Parameter Single-Cell Mass Cytometry Blood. 118: 2565-2565. DOI: 10.1182/Blood.V118.21.2565.2565  0.625
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