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Timothy Cardozo - Publications

Affiliations: 
Program in Computational Biology New York University, New York, NY, United States 
Area:
Bioinformatics
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hernandez DN, Tam K, Shopsin B, Radke EE, Law K, Cardozo T, Torres VJ, Silverman GJ. Convergent Evolution of Neutralizing Antibodies to Staphylococcus aureus γ-Hemolysin C That Recognize an Immunodominant Primary Sequence-Dependent B-Cell Epitope. Mbio. 11. PMID 32546616 DOI: 10.1128/Mbio.00460-20  0.326
2020 Yuniati L, Lauriola A, Gerritsen M, Abreu S, Ni E, Tesoriero C, Onireti JO, Low TY, Heck AJR, Vettori A, Cardozo T, Guardavaccaro D. Ubiquitylation of the ER-Shaping Protein Lunapark via the CRL3 Ubiquitin Ligase Complex. Cell Reports. 31: 107664. PMID 32433973 DOI: 10.1016/J.Celrep.2020.107664  0.345
2018 Lough L, Sherman D, Ni E, Young LM, Hao B, Cardozo T. Chemical probes of Skp2-mediated p27 ubiquitylation and degradation. Medchemcomm. 9: 1093-1104. PMID 30108998 DOI: 10.1039/C8Md00140E  0.31
2018 Kim EJ, Felsovalyi K, Young LM, Shmelkov SV, Grunebaum MF, Cardozo T. Molecular basis of atypicality of bupropion inferred from its receptor engagement in nervous system tissues. Psychopharmacology. PMID 29961917 DOI: 10.1007/S00213-018-4958-9  0.312
2017 Cardozo T, Shmelkov E, Felsovalyi K, Swetnam J, Butler T, Malaspina D, Shmelkov SV. Chemistry-based molecular signature underlying the atypia of clozapine. Translational Psychiatry. 7: e1036. PMID 28221369 DOI: 10.1038/Tp.2017.6  0.318
2017 Aiyegbo MS, Shmelkov E, Dominguez L, Goger M, Battacharya S, deCamp AC, Gilbert PB, Berman PW, Cardozo T. Peptide Targeted by Human Antibodies Associated with HIV Vaccine-Associated Protection Assumes a Dynamic α-Helical Structure. Plos One. 12: e0170530. PMID 28107435 DOI: 10.1371/Journal.Pone.0170530  0.325
2016 James TD, Cardozo T, Abell LE, Hsieh ML, Jenkins LM, Jha SS, Hinton DM. Visualizing the phage T4 activated transcription complex of DNA and E. coli RNA polymerase. Nucleic Acids Research. PMID 27458207 DOI: 10.1093/Nar/Gkw656  0.57
2016 Natarajan A, Nadarajah V, Felsovalyi K, Wang W, Jeyachandran VR, Wasson RA, Cardozo T, Bracken C, Krogsgaard M. Structural Model of the Extracellular Assembly of the TCR-CD3 Complex. Cell Reports. PMID 26997265 DOI: 10.1016/J.Celrep.2016.02.081  0.307
2015 Nemetski SM, Cardozo TJ, Bosch G, Weltzer R, O'Malley K, Ejigiri I, Kumar KA, Buscaglia CA, Nussenzweig V, Sinnis P, Levitskaya J, Bosch J. Inhibition by stabilization: targeting the Plasmodium falciparum aldolase-TRAP complex. Malaria Journal. 14: 324. PMID 26289816 DOI: 10.1186/S12936-015-0834-9  0.73
2015 Nemetski SM, Cardozo TJ, Bosch G, Weltzer R, O'Malley K, Ejigiri I, Kumar KA, Buscaglia CA, Nussenzweig V, Sinnis P, Levitskaya J, Bosch J. Inhibition by stabilization: Targeting the Plasmodium falciparum aldolase-TRAP complex Malaria Journal. 14. DOI: 10.1186/s12936-015-0834-9  0.731
2014 Shmelkov E, Nadas A, Cardozo T. Could vaccination with AIDSVAX immunogens have resulted in antibody-dependent enhancement of HIV infection in human subjects? Human Vaccines & Immunotherapeutics. 10: 3013-6. PMID 25483466 DOI: 10.4161/21645515.2014.972148  0.301
2014 Tassaneetrithep B, Tivon D, Swetnam J, Karasavvas N, Michael NL, Kim JH, Marovich M, Cardozo T. Cryptic determinant of α4β7 binding in the V2 loop of HIV-1 gp120. Plos One. 9: e108446. PMID 25265384 DOI: 10.1371/Journal.Pone.0108446  0.387
2014 Malecek K, Grigoryan A, Zhong S, Gu WJ, Johnson LA, Rosenberg SA, Cardozo T, Krogsgaard M. Specific increase in potency via structure-based design of a TCR. Journal of Immunology (Baltimore, Md. : 1950). 193: 2587-99. PMID 25070852 DOI: 10.4049/Jimmunol.1302344  0.303
2014 Wang W, Li T, Felsovalyi K, Chen C, Cardozo T, Krogsgaard M. Quantitative analysis of T cell receptor complex interaction sites using genetically encoded photo-cross-linkers. Acs Chemical Biology. 9: 2165-72. PMID 25061810 DOI: 10.1021/Cb500351S  0.319
2014 Shmelkov E, Grigoryan A, Krachmarov C, Abagyan R, Cardozo T. Sequence-conserved and antibody-accessible sites in the V1V2 domain of HIV-1 gp120 envelope protein. Aids Research and Human Retroviruses. 30: 927-31. PMID 25051095 DOI: 10.1089/Aid.2014.0034  0.332
2014 Cardozo T, Wang S, Jiang X, Kong XP, Hioe C, Krachmarov C. Vaccine focusing to cross-subtype HIV-1 gp120 variable loop epitopes. Vaccine. 32: 4916-24. PMID 25045827 DOI: 10.1016/J.Vaccine.2014.07.026  0.326
2014 Martin L, Grigoryan A, Wang D, Wang J, Breda L, Rivella S, Cardozo T, Gardner LB. Identification and characterization of small molecules that inhibit nonsense-mediated RNA decay and suppress nonsense p53 mutations. Cancer Research. 74: 3104-13. PMID 24662918 DOI: 10.1158/0008-5472.Can-13-2235  0.32
2014 Shmelkov E, Krachmarov C, Grigoryan AV, Pinter A, Statnikov A, Cardozo T. Computational prediction of neutralization epitopes targeted by human anti-V3 HIV monoclonal antibodies. Plos One. 9: e89987. PMID 24587168 DOI: 10.1371/Journal.Pone.0089987  0.34
2014 Malecek K, Grigoryan A, Zhong S, Gu WJ, Johnson LA, Rosenberg SA, Cardozo T, Krogsgaard M. Specific increase in T-cell potency via structure-based design of a T-cell receptor for adoptive immunotherapy. Journal of Clinical Oncology. 32: 3063-3063. DOI: 10.1200/Jco.2014.32.15_Suppl.3063  0.319
2013 Weiser K, Barton M, Gershoony D, Dasgupta R, Cardozo T. HIV's Nef interacts with β-catenin of the Wnt signaling pathway in HEK293 cells. Plos One. 8: e77865. PMID 24130899 DOI: 10.1371/Journal.Pone.0077865  0.616
2013 Zolla-Pazner S, deCamp AC, Cardozo T, Karasavvas N, Gottardo R, Williams C, Morris DE, Tomaras G, Rao M, Billings E, Berman P, Shen X, Andrews C, O'Connell RJ, Ngauy V, et al. Analysis of V2 antibody responses induced in vaccinees in the ALVAC/AIDSVAX HIV-1 vaccine efficacy trial. Plos One. 8: e53629. PMID 23349725 DOI: 10.1371/Journal.Pone.0053629  0.335
2013 Pavlides SC, Huang K, Wu L, Rueda BR, Blank SV, Mittal KR, Cardozo T, Gold LI. Abstract 3410: Inhibitors of Skp2 E3ligase stabilize nuclear p27kip1for regain of growth regulation in cancer. Cancer Research. 73: 3410-3410. DOI: 10.1158/1538-7445.Am2013-3410  0.303
2012 Almond D, Krachmarov C, Swetnam J, Zolla-Pazner S, Cardozo T. Resistance of Subtype C HIV-1 Strains to Anti-V3 Loop Antibodies. Advances in Virology. 2012: 803535. PMID 22548061 DOI: 10.1155/2012/803535  0.601
2012 Cardozo T. Molecular epidemiology of the protective RV144 V2 loop epitope Retrovirology. 9: 320. DOI: 10.1186/1742-4690-9-S2-P320  0.312
2011 Gorny MK, Sampson J, Li H, Jiang X, Totrov M, Wang XH, Williams C, O'Neal T, Volsky B, Li L, Cardozo T, Nyambi P, Zolla-Pazner S, Kong XP. Human anti-V3 HIV-1 monoclonal antibodies encoded by the VH5-51/VL lambda genes define a conserved antigenic structure. Plos One. 6: e27780. PMID 22164215 DOI: 10.1371/Journal.Pone.0027780  0.353
2011 Shmelkov E, Nadas A, Swetnam J, Zolla-Pazner S, Cardozo T. Indirect detection of an epitope-specific response to HIV-1 gp120 immunization in human subjects. Plos One. 6: e27279. PMID 22076145 DOI: 10.1371/Journal.Pone.0027279  0.322
2011 Artsimovitch I, Svetlov V, Nemetski SM, Epshtein V, Cardozo T, Nudler E. Tagetitoxin inhibits RNA polymerase through trapping of the trigger loop. The Journal of Biological Chemistry. 286: 40395-400. PMID 21976682 DOI: 10.1074/Jbc.M111.300889  0.746
2011 Allen GS, Wu CC, Cardozo T, Stokes DL. The architecture of CopA from Archeaoglobus fulgidus studied by cryo-electron microscopy and computational docking. Structure (London, England : 1993). 19: 1219-32. PMID 21820315 DOI: 10.1016/J.Str.2011.05.014  0.311
2011 Zolla-Pazner S, Kong XP, Jiang X, Cardozo T, Nádas A, Cohen S, Totrov M, Seaman MS, Wang S, Lu S. Cross-clade HIV-1 neutralizing antibodies induced with V3-scaffold protein immunogens following priming with gp120 DNA. Journal of Virology. 85: 9887-98. PMID 21795338 DOI: 10.1128/Jvi.05086-11  0.322
2011 Agarwal A, Hioe CE, Swetnam J, Zolla-Pazner S, Cardozo T. Quantitative assessment of masking of neutralization epitopes in HIV-1. Vaccine. 29: 6736-41. PMID 21216319 DOI: 10.1016/J.Vaccine.2010.12.052  0.532
2011 Agarwal A, Oronsaye E, Nadas A, Zolla-Pazner S, Cardozo T. CCR5/CXCR4 discriminating sites in the HIV-1 Gp120 core 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 519-521. DOI: 10.1145/2147805.2147888  0.493
2011 Totrov M, Jiang X, Kong XP, Cohen S, Krachmarov C, Salomon A, Williams C, Seaman MS, Abagyan R, Cardozo T, Gorny MK, Wang S, Lu S, Pinter A, Zolla-Pazner S. Corrigendum to Structure-guided design and immunological characterization of immunogens presenting the HIV-1 gp120 V3 loop on a CTB scaffold" [Virology 351 (2010) 513-523] Virology. 409: 360. DOI: 10.1016/J.Virol.2010.11.003  0.311
2010 Swetnam J, Shmelkov E, Zolla-Pazner S, Cardozo T. Comparative magnitude of cross-strain conservation of HIV variable loop neutralization epitopes. Plos One. 5: e15994. PMID 21209919 DOI: 10.1371/Journal.Pone.0015994  0.335
2010 Wang H, Blais J, Ron D, Cardozo T. Structural determinants of PERK inhibitor potency and selectivity. Chemical Biology & Drug Design. 76: 480-95. PMID 21070610 DOI: 10.1111/J.1747-0285.2010.01048.X  0.366
2010 Almond D, Cardozo T. Assessment of immunologically relevant dynamic tertiary structural features of the HIV-1 V3 loop crown R2 sequence by ab initio folding. Journal of Visualized Experiments : Jove. PMID 20864931 DOI: 10.3791/2118  0.585
2010 Goyanka R, Das S, Samuels HH, Cardozo T. Nuclear receptor engineering based on novel structure activity relationships revealed by farnesyl pyrophosphate. Protein Engineering, Design & Selection : Peds. 23: 809-15. PMID 20817759 DOI: 10.1093/Protein/Gzq056  0.692
2010 Totrov M, Jiang X, Kong XP, Cohen S, Krachmarov C, Salomon A, Williams C, Seaman MS, Abagyan R, Cardozo T, Gorny MK, Wang S, Lu S, Pinter A, Zolla-Pazner S. Structure-guided design and immunological characterization of immunogens presenting the HIV-1 gp120 V3 loop on a CTB scaffold. Virology. 405: 513-23. PMID 20663531 DOI: 10.1016/J.Virol.2010.06.027  0.353
2010 Jiang X, Burke V, Totrov M, Williams C, Cardozo T, Gorny MK, Zolla-Pazner S, Kong XP. Conserved structural elements in the V3 crown of HIV-1 gp120. Nature Structural & Molecular Biology. 17: 955-61. PMID 20622876 DOI: 10.1038/Nsmb.1861  0.371
2010 Zolla-Pazner S, Cardozo T. Structure-function relationships of HIV-1 envelope sequence-variable regions refocus vaccine design. Nature Reviews. Immunology. 10: 527-35. PMID 20577269 DOI: 10.1038/Nri2801  0.312
2010 Almond D, Kimura T, Kong X, Swetnam J, Zolla-Pazner S, Cardozo T. Structural conservation predominates over sequence variability in the crown of HIV type 1's V3 loop. Aids Research and Human Retroviruses. 26: 717-23. PMID 20560796 DOI: 10.1089/Aid.2009.0254  0.583
2009 Cardozo T, Swetnam J, Pinter A, Krachmarov C, Nadas A, Almond D, Zolla-Pazner S. Worldwide distribution of HIV type 1 epitopes recognized by human anti-V3 monoclonal antibodies. Aids Research and Human Retroviruses. 25: 441-50. PMID 19320565 DOI: 10.1089/Aid.2008.0188  0.591
2009 Almond D, Kimura T, Kong X, Swetnam J, Zolla-Pazner S, Cardozo T. P19-21. Sequence variability in the crown of the V3 loop of the HIV-1 envelope is clustered within a small 3D structural zone Retrovirology. 6: P341. DOI: 10.1186/1742-4690-6-S3-P341  0.561
2009 Totrov M, Jiang X, Kong X, Cohen S, Krachmarov C, Williams C, Cardozo T, Gorny M, Wang S, Lu S, Pinter A, Zolla-Pazner S. P12-13. Structure-guided design and immunological characterization of immunogen constructs presenting the HIV-1 gp120 V3 loop on a CTB scaffold Retrovirology. 6: P179. DOI: 10.1186/1742-4690-6-S3-P179  0.37
2007 Cardozo T, Pagano M. Wrenches in the works: drug discovery targeting the SCF ubiquitin ligase and APC/C complexes. Bmc Biochemistry. 8: S9. PMID 18047746 DOI: 10.1186/1471-2091-8-S1-S9  0.315
2007 Das S, Schapira M, Tomic-Canic M, Goyanka R, Cardozo T, Samuels HH. Farnesyl pyrophosphate is a novel transcriptional activator for a subset of nuclear hormone receptors. Molecular Endocrinology (Baltimore, Md.). 21: 2672-86. PMID 17666588 DOI: 10.1210/Me.2007-0080  0.679
2007 Bosch J, Buscaglia CA, Krumm B, Ingason BP, Lucas R, Roach C, Cardozo T, Nussenzweig V, Hol WG. Aldolase provides an unusual binding site for thrombospondin-related anonymous protein in the invasion machinery of the malaria parasite. Proceedings of the National Academy of Sciences of the United States of America. 104: 7015-20. PMID 17426153 DOI: 10.1073/Pnas.0605301104  0.352
2007 Cardozo T, Kimura T, Philpott S, Weiser B, Burger H, Zolla-Pazner S. Structural basis for coreceptor selectivity by the HIV type 1 V3 loop. Aids Research and Human Retroviruses. 23: 415-26. PMID 17411375 DOI: 10.1089/Aid.2006.0130  0.333
2007 Buscaglia CA, Hol WG, Nussenzweig V, Cardozo T. Modeling the interaction between aldolase and the thrombospondin-related anonymous protein, a key connection of the malaria parasite invasion machinery. Proteins. 66: 528-37. PMID 17154157 DOI: 10.1002/Prot.21266  0.394
2006 Felsövályi K, Nádas A, Zolla-Pazner S, Cardozo T. Distinct sequence patterns characterize the V3 region of HIV type 1 gp120 from subtypes A and C. Aids Research and Human Retroviruses. 22: 703-8. PMID 16831095 DOI: 10.1089/Aid.2006.22.703  0.319
2005 Cardozo T, Abagyan R. Druggability of SCF ubiquitin ligase-protein interfaces. Methods in Enzymology. 399: 634-53. PMID 16338386 DOI: 10.1016/S0076-6879(05)99042-3  0.329
1998 Isakoff SJ, Cardozo T, Andreev J, Li Z, Ferguson KM, Abagyan R, Lemmon MA, Aronheim A, Skolnik EY. Identification and analysis of PH domain-containing targets of phosphatidylinositol 3-kinase using a novel in vivo assay in yeast. The Embo Journal. 17: 5374-87. PMID 9736615 DOI: 10.1093/Emboj/17.18.5374  0.317
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