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Ite A. Laird-Offringa - Publications

Affiliations: 
Biochemistry and Molecular Biology University of Southern California, Los Angeles, CA, United States 
Area:
Molecular Biology
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wong JYY, Zhang H, Hsiung CA, Shiraishi K, Yu K, Matsuo K, Wong MP, Hong YC, Wang J, Seow WJ, Wang Z, Song M, Kim HN, Chang IS, Chatterjee N, ... ... Laird-Offringa IA, et al. Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics. PMID 31306748 DOI: 10.1016/J.Ygeno.2019.07.008  0.461
2018 Zhou B, Flodby P, Luo J, Castillo DR, Liu Y, Yu FX, McConnell A, Varghese B, Li G, Chimge NO, Sunohara M, Koss MN, Elatre W, Conti P, Liebler JM, ... ... Laird-Offringa IA, et al. Claudin-18-mediated YAP activity regulates lung stem and progenitor cell homeostasis and tumorigenesis. The Journal of Clinical Investigation. PMID 29400695 DOI: 10.1172/Jci90429  0.465
2018 Stueve TR, Yang C, Marconett CN, Yan C, Zhou B, Borok Z, Laird-Offringa IA. Abstract A37: Tobacco smoke increases lung adenocarcinoma risk by downregulating TGF-beta and AhR-regulated focal adhesion proteins involved in injury resolution Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-A37  0.444
2018 Mullen DJ, Stueve TR, Yan C, Siegmund KD, Laird-Offringa IA. Abstract A08: Widespread tobacco smoking-associated changes in DNA methylation and gene expression in lung tissue of smokers Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-A08  0.579
2017 Vannini I, Wise PM, Challagundla KB, Plousiou M, Raffini M, Bandini E, Fanini F, Paliaga G, Crawford M, Ferracin M, Ivan C, Fabris L, Davuluri RV, Guo Z, Cortez MA, ... ... Laird-Offringa IA, et al. Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs. Nature Communications. 8: 1801. PMID 29180617 DOI: 10.1038/S41467-017-01562-9  0.466
2017 Stueve TR, Li WQ, Shi J, Marconett CN, Zhang T, Yang C, Mullen D, Yan C, Wheeler W, Hua X, Zhou B, Borok Z, Caporaso NE, Pesatori AC, Duan J, ... Laird-Offringa IA, et al. Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers. Human Molecular Genetics. 26: 3014-3027. PMID 28854564 DOI: 10.1093/Hmg/Ddx188  0.552
2016 Seow WJ, Matsuo K, Hsiung CA, Shiraishi K, Song M, Kim HN, Wong MP, Hong YC, Dean Hosgood H, Wang Z, Chang IS, Wang JC, Chatterjee N, Tucker M, Wei H, ... ... Laird-Offringa IA, et al. Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations. Human Molecular Genetics. PMID 28025329 DOI: 10.1093/Hmg/Ddw414  0.416
2016 Shi J, Hua X, Zhu B, Ravichandran S, Wang M, Nguyen C, Brodie SA, Palleschi A, Alloisio M, Pariscenti G, Jones K, Zhou W, Bouk AJ, Boland J, Hicks B, ... ... Laird-Offringa I, et al. Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study. Plos Medicine. 13: e1002162. PMID 27923066 DOI: 10.1371/Journal.Pmed.1002162  0.503
2016 Marconett CN, Zhou B, Sunohara M, Pouldar TM, Wang H, Liu Y, Rieger ME, Tran E, Flodby P, Siegmund KD, Crandall ED, Laird-Offringa IA, Borok Z. Cross-species Transcriptome Profiling Identifies New Alveolar Epithelial Type I Cell-specific Genes. American Journal of Respiratory Cell and Molecular Biology. PMID 27749084 DOI: 10.1165/Rcmb.2016-0071Oc  0.407
2016 Pulido MA, DerHartunian MK, Qin Z, Chung EM, Kang DS, Woodham AW, Tsou JA, Klooster R, Akbari O, Wang L, Kast WM, Liu SV, Verschuuren JJ, Aswad DW, Laird-Offringa IA. Isoaspartylation appears to trigger small cell lung cancer-associated autoimmunity against neuronal protein ELAVL4. Journal of Neuroimmunology. 299: 70-78. PMID 27725125 DOI: 10.1016/J.Jneuroim.2016.09.002  0.788
2016 Zuber V, Marconett CN, Shi J, Hua X, Wheeler W, Yang C, Song L, Dale AM, Laplana M, Risch A, Witoelar A, Thompson WK, Schork AJ, Bettella F, Wang Y, ... ... Laird-Offringa IA, et al. Pleiotropic Analysis of Lung Cancer and Blood Triglycerides. Journal of the National Cancer Institute. 108. PMID 27565901 DOI: 10.1093/Jnci/Djw167  0.477
2016 Stueve TR, Marconett CN, Zhou B, Borok Z, Laird-Offringa IA. The importance of detailed epigenomic profiling of different cell types within organs. Epigenomics. PMID 27305639 DOI: 10.2217/Epi-2016-0005  0.44
2016 Flodby P, Li C, Liu Y, Wang H, Marconett CN, Laird-Offringa IA, Minoo P, Lee AS, Zhou B. GRP78 Regulates ER Homeostasis and Distal Epithelial Cell Survival During Lung Development. American Journal of Respiratory Cell and Molecular Biology. PMID 26816051 DOI: 10.1165/Rcmb.2015-0327Oc  0.402
2016 Yang C, Stueve TR, Marconett CN, Rhie SK, Luo J, Zhou B, Borok Z, Laird-Offringa IA. Functional lung adenocarcinoma risk SNPs identified through positional integration with human alveolar epithelial cell epigenomes Journal of Thoracic Oncology. 11: S46. DOI: 10.1016/J.Jtho.2015.12.076  0.45
2015 Liebler JM, Marconett CN, Juul N, Wang H, Liu Y, Flodby P, Laird-Offringa IA, Minoo P, Zhou B. Combinations of differentiation markers distinguish subpopulations of alveolar epithelial cells in adult lung. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00337.2015. PMID 26545903 DOI: 10.1152/Ajplung.00337.2015  0.42
2015 Schliekelman MJ, Taguchi A, Zhu J, Dai X, Rodriguez J, Celiktas M, Zhang Q, Chin A, Wong CH, Wang H, McFerrin L, Selamat SA, Yang C, Kroh EM, Garg KS, ... ... Laird-Offringa IA, et al. Molecular portraits of epithelial, mesenchymal, and hybrid States in lung adenocarcinoma and their relevance to survival. Cancer Research. 75: 1789-800. PMID 25744723 DOI: 10.1158/0008-5472.Can-14-2535  0.812
2014 Marconett CN, Zhou B, Siegmund KD, Borok Z, Laird-Offringa IA. Transcriptomic Profiling of Primary Alveolar Epithelial Cell Differentiation in Human and Rat. Genomics Data. 2: 105-109. PMID 25343132 DOI: 10.1016/J.Gdata.2014.05.011  0.372
2014 Shi J, Marconett CN, Duan J, Hyland PL, Li P, Wang Z, Wheeler W, Zhou B, Campan M, Lee DS, Huang J, Zhou W, Triche T, Amundadottir L, Warner A, ... ... Laird-Offringa IA, et al. Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue. Nature Communications. 5: 3365. PMID 24572595 DOI: 10.1038/Ncomms4365  0.488
2014 Wilson IM, Vucic EA, Enfield KS, Thu KL, Zhang YA, Chari R, Lockwood WW, Radulovich N, Starczynowski DT, Banáth JP, Zhang M, Pusic A, Fuller M, Lonergan KM, Rowbotham D, ... ... Laird-Offringa IA, et al. EYA4 is inactivated biallelically at a high frequency in sporadic lung cancer and is associated with familial lung cancer risk. Oncogene. 33: 4464-73. PMID 24096489 DOI: 10.1038/Onc.2013.396  0.839
2014 Pulido MA, Lombardi V, Lee D, Wang Y, Chung E, Wang L, Kast WM, Akbari O, Laird-Offringa IA. Abstract 3623: Fluctuating antibody response and CD4-positive T-cells in a small-cell lung cancer mouse model Cancer Research. 74: 3623-3623. DOI: 10.1158/1538-7445.Am2014-3623  0.4
2014 Shi J, Marconett C, Duan J, Hyland P, Li P, Wang Z, Wheeler W, Campan M, Huang J, Zhou W, Triche T, Amundadottir L, Hutchinson A, Chen P, Zhou B, ... ... Laird-Offringa IA, et al. Abstract 287: Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue Cancer Research. 74: 287-287. DOI: 10.1158/1538-7445.Am2014-287  0.499
2013 Tam KW, Zhang W, Soh J, Stastny V, Chen M, Sun H, Thu K, Rios JJ, Yang C, Marconett CN, Selamat SA, Laird-Offringa IA, Taguchi A, Hanash S, Shames D, et al. CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 8: 1378-88. PMID 24077454 DOI: 10.1097/Jto.0B013E3182A46C0C  0.808
2013 Marconett CN, Zhou B, Rieger ME, Selamat SA, Dubourd M, Fang X, Lynch SK, Stueve TR, Siegmund KD, Berman BP, Borok Z, Laird-Offringa IA. Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation. Plos Genetics. 9: e1003513. PMID 23818859 DOI: 10.1371/Journal.Pgen.1003513  0.785
2013 Liu SV, Fabbri M, Gitlitz BJ, Laird-Offringa IA. Epigenetic therapy in lung cancer. Frontiers in Oncology. 3: 135. PMID 23755372 DOI: 10.3389/Fonc.2013.00135  0.554
2013 Law MJ, Lee DS, Lee CS, Anglim PP, Haworth IS, Laird-Offringa IA. The role of the C-terminal helix of U1A protein in the interaction with U1hpII RNA. Nucleic Acids Research. 41: 7092-100. PMID 23703211 DOI: 10.1093/Nar/Gkt326  0.74
2013 Schliekelman MJ, Taguchi A, Zhu J, Dai X, Zhang Q, Chin A, Wong C, Wang H, Gazdar A, Laird-Offringa I, Tewari M, Thiery JP, Hanash S. Abstract 1492: Systems analysis of epithelial-mesenchymal transition and cell invasion identifies functional gene signatures predictive of survival in lung cancer. Cancer Research. 73: 1492-1492. DOI: 10.1158/1538-7445.Am2013-1492  0.502
2012 Chen Y, Bates DL, Dey R, Chen PH, Machado AC, Laird-Offringa IA, Rohs R, Chen L. DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation. Cell Reports. 2: 1197-206. PMID 23142663 DOI: 10.1016/J.Celrep.2012.10.012  0.359
2012 Selamat SA, Chung BS, Girard L, Zhang W, Zhang Y, Campan M, Siegmund KD, Koss MN, Hagen JA, Lam WL, Lam S, Gazdar AF, Laird-Offringa IA. Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression. Genome Research. 22: 1197-211. PMID 22613842 DOI: 10.1101/Gr.132662.111  0.862
2012 Johnson CJS, Galler JS, Anglim PP, Tsou JA, Selamt SA, Rom WN, Laird-Offringa IA. Abstract B10: Detection of DNA methylation in the serum of lung cancer cases and controls using Digital MethyLight Clinical Cancer Research. 18: B10-B10. DOI: 10.1158/1078-0432.12Aacriaslc-B10  0.83
2011 Campan M, Moffitt M, Houshdaran S, Shen H, Widschwendter M, Daxenbichler G, Long T, Marth C, Laird-Offringa IA, Press MF, Dubeau L, Siegmund KD, Wu AH, Groshen S, Chandavarkar U, et al. Genome-scale screen for DNA methylation-based detection markers for ovarian cancer. Plos One. 6: e28141. PMID 22163280 DOI: 10.1371/Journal.Pone.0028141  0.482
2011 Selamat SA, Galler JS, Joshi AD, Fyfe MN, Campan M, Siegmund KD, Kerr KM, Laird-Offringa IA. DNA methylation changes in atypical adenomatous hyperplasia, adenocarcinoma in situ, and lung adenocarcinoma. Plos One. 6: e21443. PMID 21731750 DOI: 10.1371/Journal.Pone.0021443  0.823
2011 Kazarian M, Laird-Offringa IA. Small-cell lung cancer-associated autoantibodies: potential applications to cancer diagnosis, early detection, and therapy. Molecular Cancer. 10: 33. PMID 21450098 DOI: 10.1186/1476-4598-10-33  0.751
2010 Vázquez-Chantada M, Fernández-Ramos D, Embade N, Martínez-Lopez N, Varela-Rey M, Woodhoo A, Luka Z, Wagner C, Anglim PP, Finnell RH, Caballería J, Laird-Offringa IA, Gorospe M, Lu SC, Mato JM, et al. HuR/methyl-HuR and AUF1 regulate the MAT expressed during liver proliferation, differentiation, and carcinogenesis. Gastroenterology. 138: 1943-53. PMID 20102719 DOI: 10.1053/J.Gastro.2010.01.032  0.775
2009 Kazarian M, Calbo J, Proost N, Carpenter CL, Berns A, Laird-Offringa IA. Immune response in lung cancer mouse model mimics human anti-Hu reactivity. Journal of Neuroimmunology. 217: 38-45. PMID 19765830 DOI: 10.1016/J.Jneuroim.2009.08.014  0.722
2009 Tsou JA, Kazarian M, Patel A, Galler JS, Laird-Offringa IA, Carpenter CL, London SJ. Low level anti-Hu reactivity: A risk marker for small cell lung cancer? Cancer Detection and Prevention. 32: 292-9. PMID 19070439 DOI: 10.1016/J.Cdp.2008.06.006  0.764
2008 Anglim PP, Alonzo TA, Laird-Offringa IA. DNA methylation-based biomarkers for early detection of non-small cell lung cancer: an update. Molecular Cancer. 7: 81. PMID 18947422 DOI: 10.1186/1476-4598-7-81  0.85
2008 Anglim PP, Galler JS, Koss MN, Hagen JA, Turla S, Campan M, Weisenberger DJ, Laird PW, Siegmund KD, Laird-Offringa IA. Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer. Molecular Cancer. 7: 62. PMID 18616821 DOI: 10.1186/1476-4598-7-62  0.838
2007 Tsou JA, Galler JS, Siegmund KD, Laird PW, Turla S, Cozen W, Hagen JA, Koss MN, Laird-Offringa IA. Identification of a panel of sensitive and specific DNA methylation markers for lung adenocarcinoma. Molecular Cancer. 6: 70. PMID 17967182 DOI: 10.1186/1476-4598-6-70  0.839
2007 Tsou JA, Galler JS, Wali A, Ye W, Siegmund KD, Groshen S, Laird PW, Turla S, Koss MN, Pass HI, Laird-Offringa IA. DNA methylation profile of 28 potential marker loci in malignant mesothelioma. Lung Cancer (Amsterdam, Netherlands). 58: 220-30. PMID 17659810 DOI: 10.1016/J.Lungcan.2007.06.015  0.828
2007 Kerr KM, Galler JS, Hagen JA, Laird PW, Laird-Offringa IA. The role of DNA methylation in the development and progression of lung adenocarcinoma. Disease Markers. 23: 5-30. PMID 17325423 DOI: 10.1155/2007/985474  0.853
2007 Galler JS, Kerr KM, Laird-Offringa IA. P2-017: DNA Methylation Changes in Developing Lung Adenocarcinoma Journal of Thoracic Oncology. 2: S488. DOI: 10.1097/01.Jto.0000283459.95476.Ad  0.84
2006 Law MJ, Rice AJ, Lin P, Laird-Offringa IA. The role of RNA structure in the interaction of U1A protein with U1 hairpin II RNA. Rna (New York, N.Y.). 12: 1168-78. PMID 16738410 DOI: 10.1261/Rna.75206  0.606
2006 Law MJ, Linde ME, Chambers EJ, Oubridge C, Katsamba PS, Nilsson L, Haworth IS, Laird-Offringa IA. The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA. Nucleic Acids Research. 34: 275-85. PMID 16407334 DOI: 10.1093/Nar/Gkj436  0.6
2006 Tsou J, Galler J, Wali A, Pass H, Siegmund K, Ye W, Groshen S, Weisenberger D, Campan M, Laird P, Turla S, Koss M, Laird-Offringa I. 147 DNA methylation profile of 28 candidate marker loci in malignant mesothelioma Lung Cancer. 54: S36. DOI: 10.1016/S0169-5002(07)70223-4  0.788
2005 Law MJ, Chambers EJ, Katsamba PS, Haworth IS, Laird-Offringa IA. Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction. Nucleic Acids Research. 33: 2917-28. PMID 15914668 DOI: 10.1093/Nar/Gki602  0.606
2005 Tsou JA, Shen LY, Siegmund KD, Long TI, Laird PW, Seneviratne CK, Koss MN, Pass HI, Hagen JA, Laird-Offringa IA. Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung. Lung Cancer (Amsterdam, Netherlands). 47: 193-204. PMID 15639718 DOI: 10.1016/J.Lungcan.2004.08.003  0.854
2004 Siegmund KD, Laird PW, Laird-Offringa IA. A comparison of cluster analysis methods using DNA methylation data. Bioinformatics (Oxford, England). 20: 1896-904. PMID 15044245 DOI: 10.1093/Bioinformatics/Bth176  0.487
2004 Marchevsky AM, Tsou JA, Laird-Offringa IA. Classification of individual lung cancer cell lines based on DNA methylation markers: use of linear discriminant analysis and artificial neural networks. The Journal of Molecular Diagnostics : Jmd. 6: 28-36. PMID 14736824 DOI: 10.1016/S1525-1578(10)60488-6  0.826
2002 Li H, Park S, Kilburn B, Jelinek MA, Henschen-Edman A, Aswad DW, Stallcup MR, Laird-Offringa IA. Lipopolysaccharide-induced methylation of HuR, an mRNA-stabilizing protein, by CARM1. Coactivator-associated arginine methyltransferase. The Journal of Biological Chemistry. 277: 44623-30. PMID 12237300 DOI: 10.1074/Jbc.M206187200  0.418
2002 Tsou JA, Hagen JA, Carpenter CL, Laird-Offringa IA. DNA methylation analysis: a powerful new tool for lung cancer diagnosis. Oncogene. 21: 5450-61. PMID 12154407 DOI: 10.1038/Sj.Onc.1205605  0.855
2002 Virmani AK, Tsou JA, Siegmund KD, Shen LY, Long TI, Laird PW, Gazdar AF, Laird-Offringa IA. Hierarchical clustering of lung cancer cell lines using DNA methylation markers. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 11: 291-7. PMID 11895880  0.842
2000 Bernasconi NL, Wormhoudt TAM, Laird-Offringa IA. Post-transcriptional deregulation of myc genes in lung cancer cell lines American Journal of Respiratory Cell and Molecular Biology. 23: 560-565. PMID 11017923 DOI: 10.1165/Ajrcmb.23.4.4233  0.454
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