Shivani Malik, Ph.D. - Publications

Affiliations: 
2012 Molecular Biology Microbiology and Biochemistry Southern Illinois University at Carbondale, Carbondale, IL 
Area:
Biochemistry, Molecular Biology

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Reggiardo RE, Maroli SV, Halasz H, Ozen M, Hrabeta-Robinson E, Behera A, Peddu V, Carrillo D, LaMontagne E, Whitehead L, Kim E, Malik S, Fernandes J, Marinov G, Collisson E, et al. Mutant KRAS regulates transposable element RNA and innate immunity via KRAB zinc-finger genes. Cell Reports. 40: 111104. PMID 35858545 DOI: 10.1016/j.celrep.2022.111104  0.344
2018 Gatchalian J, Malik S, Ho J, Lee DS, Kelso TWR, Shokhirev MN, Dixon JR, Hargreaves DC. A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells. Nature Communications. 9: 5139. PMID 30510198 DOI: 10.1038/S41467-018-07528-9  0.338
2016 Roy N, Takeuchi KK, Ruggeri JM, Bailey P, Chang D, Li J, Leonhardt L, Puri S, Hoffman MT, Gao S, Halbrook CJ, Song Y, Ljungman M, Malik S, Wright CV, et al. PDX1 dynamically regulates pancreatic ductal adenocarcinoma initiation and maintenance. Genes & Development. 30: 2669-2683. PMID 28087712 DOI: 10.1101/Gad.291021.116  0.35
2015 Roy N, Malik S, Villanueva KE, Urano A, Lu X, Von Figura G, Seeley ES, Dawson DW, Collisson EA, Hebrok M. Brg1 promotes both tumor-suppressive and oncogenic activities at distinct stages of pancreatic cancer formation. Genes & Development. 29: 658-71. PMID 25792600 DOI: 10.1101/Gad.256628.114  0.412
2014 Malik S, Bhaumik SR. Regulation of active genome integrity and expression by Rad26p. Nucleus (Austin, Tex.). 5: 520-6. PMID 25484185 DOI: 10.4161/Nucl.36230  0.668
2014 Sen R, Malik S, Frankland-Searby S, Uprety B, Lahudkar S, Bhaumik SR. Rrd1p, an RNA polymerase II-specific prolyl isomerase and activator of phosphoprotein phosphatase, promotes transcription independently of rapamycin response. Nucleic Acids Research. 42: 9892-907. PMID 25114048 DOI: 10.1093/Nar/Gku703  0.784
2013 Malik S, Durairaj G, Bhaumik SR. Mechanisms of antisense transcription initiation from the 3' end of the GAL10 coding sequence in vivo. Molecular and Cellular Biology. 33: 3549-67. PMID 23836882 DOI: 10.1128/Mcb.01715-12  0.812
2012 Malik S, Bhaumik SR. Rad26p, a transcription-coupled repair factor, promotes the eviction and prevents the reassociation of histone H2A-H2B dimer during transcriptional elongation in vivo. Biochemistry. 51: 5873-5. PMID 22794311 DOI: 10.1021/Bi3005768  0.789
2012 Malik S, Chaurasia P, Lahudkar S, Uprety B, Bhaumik SR. Rad26p regulates the occupancy of histone H2A-H2B dimer at the active genes in vivo. Nucleic Acids Research. 40: 3348-63. PMID 22199252 DOI: 10.1093/Nar/Gkr1244  0.8
2012 Uprety B, Lahudkar S, Malik S, Bhaumik SR. The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo. Nucleic Acids Research. 40: 1969-83. PMID 22086954 DOI: 10.1093/Nar/Gkr977  0.793
2010 Durairaj G, Chaurasia P, Lahudkar S, Malik S, Shukla A, Bhaumik SR. Regulation of chromatin assembly/disassembly by Rtt109p, a histone H3 Lys56-specific acetyltransferase, in vivo. The Journal of Biological Chemistry. 285: 30472-9. PMID 20668333 DOI: 10.1074/Jbc.M110.113225  0.719
2010 Malik S, Bhaumik SR. Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human. The Febs Journal. 277: 1805-21. PMID 20236312 DOI: 10.1111/J.1742-4658.2010.07607.X  0.704
2010 Malik S, Chaurasia P, Lahudkar S, Durairaj G, Shukla A, Bhaumik SR. Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo. Nucleic Acids Research. 38: 1461-77. PMID 20007604 DOI: 10.1093/Nar/Gkp1147  0.708
2009 Malik S, Shukla A, Sen P, Bhaumik SR. The 19 s proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo. The Journal of Biological Chemistry. 284: 35714-24. PMID 19843524 DOI: 10.1074/Jbc.M109.035709  0.771
2008 Bhaumik SR, Malik S. Diverse regulatory mechanisms of eukaryotic transcriptional activation by the proteasome complex. Critical Reviews in Biochemistry and Molecular Biology. 43: 419-33. PMID 19058045 DOI: 10.1080/10409230802605914  0.73
2008 Malik S, Bagla S, Chaurasia P, Duan Z, Bhaumik SR. Elongating RNA polymerase II is disassembled through specific degradation of its largest but not other subunits in response to DNA damage in vivo. The Journal of Biological Chemistry. 283: 6897-905. PMID 18195014 DOI: 10.1074/Jbc.M707649200  0.682
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