| Year |
Citation |
Score |
| 2023 |
Rondón JJ, Pisarenco VA, Ramón Pardos-Blas J, Sánchez-Gracia A, Zardoya R, Rozas J. Comparative genomic analysis of chemosensory-related gene families in gastropods. Molecular Phylogenetics and Evolution. 192: 107986. PMID 38142794 DOI: 10.1016/j.ympev.2023.107986 |
0.854 |
|
| 2023 |
Obiol JF, Herranz JM, Paris JR, Whiting JR, Rozas J, Riutort M, González-Solís J. Corrigendum to "Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds" [Mol. Phylogenet. Evol. 179 (2023) 107671]. Molecular Phylogenetics and Evolution. 107888. PMID 37507269 DOI: 10.1016/j.ympev.2023.107888 |
0.83 |
|
| 2022 |
Ferrer Obiol J, Herranz JM, Paris JR, Whiting JR, Rozas J, Riutort M, González-Solís J. Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds. Molecular Phylogenetics and Evolution. 107671. PMID 36442764 DOI: 10.1016/j.ympev.2022.107671 |
0.723 |
|
| 2022 |
Librado P, Rozas J. Reconstructing Gene Gains and Losses with BadiRate. Methods in Molecular Biology (Clifton, N.J.). 2569: 213-232. PMID 36083450 DOI: 10.1007/978-1-0716-2691-7_10 |
0.768 |
|
| 2022 |
Cuevas-Caballé C, Obiol JF, Vizueta J, Genovart M, Gonzalez-Solís J, Riutort M, Rozas J. The first genome of the Balearic shearwater (Puffinus mauretanicus) provides a valuable resource for conservation genomics and sheds light on adaptation to a pelagic lifestyle. Genome Biology and Evolution. PMID 35524941 DOI: 10.1093/gbe/evac067 |
0.854 |
|
| 2021 |
Cerca J, Armstrong EE, Vizueta J, Fernández R, Dimitrov D, Petersen B, Prost S, Rozas J, Petrov D, Gillespie RG. The Tetragnatha kauaiensis genome sheds light on the origins of genomic novelty in spiders. Genome Biology and Evolution. PMID 34849853 DOI: 10.1093/gbe/evab262 |
0.867 |
|
| 2021 |
Escuer P, Pisarenco VA, Fernández-Ruiz AA, Vizueta J, Sánchez-Herrero JF, Arnedo MA, Sánchez-Gracia A, Rozas J. The chromosome-scale assembly of the Canary Islands endemic spider Dysdera silvatica (Arachnida, Araneae) sheds light on the origin and genome structure of chemoreceptor gene families in chelicerates. Molecular Ecology Resources. PMID 34268885 DOI: 10.1111/1755-0998.13471 |
0.82 |
|
| 2021 |
Balart-García P, Cieslak A, Escuer P, Rozas J, Ribera I, Fernández R. Smelling in the dark: phylogenomic insights into the chemosensory system of a subterranean beetle. Molecular Ecology. PMID 33856058 DOI: 10.1111/mec.15921 |
0.852 |
|
| 2021 |
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Rozas J, et al. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. PMID 33833441 DOI: 10.1038/s41586-021-03473-8 |
0.655 |
|
| 2021 |
Recuerda M, Vizueta J, Cuevas-Caballé C, Blanco G, Rozas J, Milá B. Chromosome-level genome assembly of the common chaffinch (Aves: Fringilla Coelebs): a valuable resource for evolutionary biology. Genome Biology and Evolution. PMID 33616654 DOI: 10.1093/gbe/evab034 |
0.856 |
|
| 2021 |
Obiol JF, James HF, Chesser RT, Bretagnolle V, González-Solís J, Rozas J, Riutort M, Welch AJ. Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to resolve Recent Radiations of Pelagic Seabirds. Systematic Biology. PMID 33512506 DOI: 10.1093/sysbio/syaa101 |
0.813 |
|
| 2020 |
Hinojosa-Alvarez S, Arias S, Ferrand S, Purugganan MD, Rozas J, Rosas U, Wegier A. The chloroplast genome of the pincushion cactus subsp. , a Mexican endangered species. Mitochondrial Dna. Part B, Resources. 5: 2038-2039. PMID 33457733 DOI: 10.1080/23802359.2020.1757523 |
0.456 |
|
| 2020 |
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Rozas J, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9 |
0.753 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, ... ... Rozas J, et al. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 123. PMID 32917281 DOI: 10.1186/s12915-020-00864-7 |
0.814 |
|
| 2020 |
Vizueta J, Escuer P, Sánchez-Gracia A, Rozas J. Genome mining and sequence analysis of chemosensory soluble proteins in arthropods. Methods in Enzymology. 642: 1-20. PMID 32828248 DOI: 10.1016/Bs.Mie.2020.05.015 |
0.833 |
|
| 2020 |
Vizueta J, Escuer P, Frías-López C, Guirao-Rico S, Hering L, Mayer G, Rozas J, Sánchez-Gracia A. Evolutionary history of major chemosensory gene families across Panarthropoda. Molecular Biology and Evolution. PMID 32750126 DOI: 10.1093/Molbev/Msaa197 |
0.82 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, ... ... Rozas J, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 90. PMID 32698880 DOI: 10.1186/S12915-020-00820-5 |
0.812 |
|
| 2020 |
Vizueta J, Sánchez-Gracia A, Rozas J. BITACORA: A comprehensive tool for the identification and annotation of gene families in genome assemblies. Molecular Ecology Resources. PMID 32492257 DOI: 10.1111/1755-0998.13202 |
0.859 |
|
| 2020 |
Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, ... ... Rozas J, et al. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications. 11: 2631. PMID 32457347 DOI: 10.1038/S41467-020-16284-8 |
0.846 |
|
| 2020 |
Clifton B, Jimenez J, Kimura A, Chahine Z, Librado P, Sanchez-Gracia A, Abbassi M, Carranza F, Chan C, Marchetti M, Zhang W, Shi M, Vu C, Yeh S, Fanti L, ... ... Rozas J, et al. Understanding the early evolutionary stages of a tandem D. melanogaster-specific gene family: a structural and functional population study. Molecular Biology and Evolution. PMID 32359138 DOI: 10.1093/Molbev/Msaa109 |
0.852 |
|
| 2020 |
Hinojosa-Alvarez S, Arias S, Ferrand S, Purugganan MD, Rozas J, Rosas U, Wegier A. The chloroplast genome of the pincushion cactus Mammilllaria haageana subsp. san-angelensis, a Mexican endangered species Mitochondrial Dna Part B. 5: 2038-2039. DOI: 10.1080/23802359.2020.1757523 |
0.418 |
|
| 2019 |
Sánchez-Herrero JF, Frías-López C, Escuer P, Hinojosa-Alvarez S, Arnedo MA, Sánchez-Gracia A, Rozas J. The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates. Gigascience. 8. PMID 31430368 DOI: 10.1093/Gigascience/Giz099 |
0.818 |
|
| 2019 |
Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, ... ... Rozas J, et al. The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31387975 DOI: 10.1073/Pnas.1822129116 |
0.867 |
|
| 2019 |
Vizueta J, Macías-Hernández N, Arnedo MA, Rozas J, Sánchez-Gracia A. Chance and predictability in evolution: the genomic basis of convergent dietary specializations in an adaptive radiation. Molecular Ecology. PMID 31359512 DOI: 10.1111/Mec.15199 |
0.826 |
|
| 2019 |
Leria L, Vila-Farré M, Álvarez-Presas M, Sánchez-Gracia A, Rozas J, Sluys R, Riutort M. Cryptic species delineation in freshwater planarians of the genus Dugesia (Platyhelminthes, Tricladida): Extreme intraindividual genetic diversity, morphological stasis, and karyological variability. Molecular Phylogenetics and Evolution. PMID 31151789 DOI: 10.1016/J.Ympev.2019.05.010 |
0.805 |
|
| 2019 |
Bernabeu M, Sánchez-Herrero JF, Huedo P, Prieto A, Hüttener M, Rozas J, Juárez A. Gene duplications in the E. coli genome: common themes among pathotypes. Bmc Genomics. 20: 313. PMID 31014240 DOI: 10.1186/S12864-019-5683-4 |
0.839 |
|
| 2018 |
Vizueta J, Rozas J, Sánchez-Gracia A. Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates. Genome Biology and Evolution. 10: 1221-1236. PMID 29788250 DOI: 10.1093/Gbe/Evy081 |
0.868 |
|
| 2017 |
Sánchez-Gracia A, Guirao-Rico S, Hinojosa-Alvarez S, Rozas J. Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes. Journal of Neurogenetics. 1-13. PMID 29168413 DOI: 10.1080/01677063.2017.1398241 |
0.8 |
|
| 2017 |
Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Datasets. Molecular Biology and Evolution. PMID 29029172 DOI: 10.1093/Molbev/Msx248 |
0.806 |
|
| 2017 |
Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, ... ... Rozas J, et al. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nature Ecology & Evolution. 1: 59. PMID 28812732 DOI: 10.1038/S41559-016-0059 |
0.811 |
|
| 2016 |
Vizueta J, Frías-López C, Macías-Hernández N, Arnedo MA, Sánchez-Gracia A, Rozas J. Evolution of chemosensory gene families in arthropods: Insight from the first inclusive comparative transcriptome analysis across spider appendages. Genome Biology and Evolution. PMID 28028122 DOI: 10.1093/Gbe/Evw296 |
0.826 |
|
| 2016 |
Clifton BD, Librado P, Yeh SD, Solares E, Real D, Jayasekera S, Zhang W, Shi M, Park R, Magie R, Ma HC, Xia XQ, Marco A, Rozas J, Ranz JM. Rapid Functional And Sequence Differentiation of a Tandemly-Repeated Species-Specific Multigene Family in Drosophila. Molecular Biology and Evolution. PMID 27702774 DOI: 10.1093/Molbev/Msw212 |
0.79 |
|
| 2016 |
Frías-López C, Sánchez-Herrero JF, Guirao-Rico S, Mora E, Arnedo MA, Sánchez-Gracia A, Rozas J. DOMINO: Development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms. Bioinformatics (Oxford, England). PMID 27531104 DOI: 10.1093/Bioinformatics/Btw534 |
0.812 |
|
| 2016 |
Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, ... ... Rozas J, et al. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochemistry and Molecular Biology. PMID 27522922 DOI: 10.1016/J.Ibmb.2016.07.005 |
0.857 |
|
| 2016 |
Librado P, Rozas J. Weak polygenic selection drives the rapid adaptation of the chemosensory system: lessons from the upstream regions of the major gene families. Genome Biology and Evolution. PMID 27503297 DOI: 10.1093/Gbe/Evw191 |
0.791 |
|
| 2016 |
Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, ... ... Rozas J, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507 |
0.832 |
|
| 2016 |
Donaire L, Rozas J, Ayllón MA. Molecular characterization of Botrytis ourmia-like virus, a mycovirus close to the plant pathogenic genus Ourmiavirus. Virology. 489: 158-164. PMID 26765967 DOI: 10.1016/J.Virol.2015.11.027 |
0.313 |
|
| 2016 |
Torres-Oliva M, Almeida FC, Sánchez-Gracia A, Rozas J. Comparative Genomics Uncovers Unique Gene Turnover and Evolutionary Rates in a Gene Family Involved in the Detection of Insect Cuticular Pheromones Genome Biology and Evolution. 8: 1734-1747. DOI: 10.1093/Gbe/Evw108 |
0.852 |
|
| 2015 |
Frías-López C, Almeida FC, Guirao-Rico S, Vizueta J, Sánchez-Gracia A, Arnedo MA, Rozas J. Comparative analysis of tissue-specific transcriptomes in the funnel-web spider Macrothele calpeiana (Araneae, Hexathelidae). Peerj. 3: e1064. PMID 26157629 DOI: 10.7717/Peerj.1064 |
0.806 |
|
| 2015 |
Kornobis E, Cabellos L, Aguilar F, Frías-López C, Rozas J, Marco J, Zardoya R. TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing. Evolutionary Bioinformatics Online. 11: 97-104. PMID 26056424 DOI: 10.4137/Ebo.S23873 |
0.788 |
|
| 2015 |
Blanco I, Kuchenbaecker K, Cuadras D, Wang X, Barrowdale D, de Garibay GR, Librado P, Sánchez-Gracia A, Rozas J, Bonifaci N, McGuffog L, Pankratz VS, Islam A, Mateo F, Berenguer A, et al. Assessing associations between the AURKA-HMMR-TPX2-TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers. Plos One. 10: e0120020. PMID 25830658 DOI: 10.1371/Journal.Pone.0120020 |
0.756 |
|
| 2015 |
Solà E, Álvarez-Presas M, Frías-López C, Littlewood DT, Rozas J, Riutort M. Evolutionary analysis of mitogenomes from parasitic and free-living flatworms. Plos One. 10: e0120081. PMID 25793530 DOI: 10.1371/Journal.Pone.0120081 |
0.839 |
|
| 2015 |
Carretero-Paulet L, Librado P, Chang TH, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba. Molecular Biology and Evolution. 32: 1284-95. PMID 25637935 DOI: 10.1093/Molbev/Msv020 |
0.795 |
|
| 2015 |
Romero-Hernández B, Tedim AP, Sánchez-Herrero JF, Librado P, Rozas J, Muñoz G, Baquero F, Cantón R, Del Campo R. Streptococcus gallolyticus subsp. gallolyticus from human and animal origins: genetic diversity, antimicrobial susceptibility, and characterization of a vancomycin-resistant calf isolate carrying a vanA-Tn1546-like element. Antimicrobial Agents and Chemotherapy. 59: 2006-15. PMID 25605355 DOI: 10.1128/Aac.04083-14 |
0.819 |
|
| 2015 |
Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA. Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba. Genome Biology and Evolution. 7: 444-56. PMID 25577200 DOI: 10.1093/Gbe/Evu288 |
0.8 |
|
| 2015 |
Almeida FC, Sánchez-Gracia A, Walden KKO, Robertson HM, Rozas J. Positive selection in extra cellular domains in the diversification of Strigamia maritima chemoreceptors Frontiers in Ecology and Evolution. 3. DOI: 10.3389/Fevo.2015.00079 |
0.811 |
|
| 2014 |
Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Rozas J, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005 |
0.877 |
|
| 2014 |
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, ... ... Rozas J, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science (New York, N.Y.). 345: 1181-4. PMID 25190796 DOI: 10.1126/Science.1255274 |
0.812 |
|
| 2014 |
Almeida FC, Sánchez-Gracia A, Campos JL, Rozas J. Family size evolution in Drosophila chemosensory gene families: a comparative analysis with a critical appraisal of methods. Genome Biology and Evolution. 6: 1669-82. PMID 24951565 DOI: 10.1093/Gbe/Evu130 |
0.824 |
|
| 2014 |
Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J. Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families. Genome Biology and Evolution. 6: 1454-65. PMID 24904011 DOI: 10.1093/Gbe/Evu117 |
0.849 |
|
| 2014 |
Álvarez-Presas M, Sánchez-Gracia A, Carbayo F, Rozas J, Riutort M. Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism. Heredity. 112: 656-65. PMID 24549112 DOI: 10.1038/Hdy.2014.3 |
0.807 |
|
| 2013 |
Librado P, Rozas J. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Genome Biology and Evolution. 5: 2096-108. PMID 24148943 DOI: 10.1093/Gbe/Evt158 |
0.751 |
|
| 2013 |
Alvarez-Ponce D, Aguadé M, Rozas J. Comment on "The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway". Evolutionary Bioinformatics Online. 9: 229-34. PMID 23818748 DOI: 10.4137/Ebo.S11915 |
0.769 |
|
| 2012 |
Vieira FG, Forêt S, He X, Rozas J, Field LM, Zhou JJ. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. Plos One. 7: e43034. PMID 22952629 DOI: 10.1371/Journal.Pone.0043034 |
0.729 |
|
| 2012 |
Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, ... ... Rozas J, et al. The Drosophila melanogaster Genetic Reference Panel. Nature. 482: 173-8. PMID 22318601 DOI: 10.1038/Nature10811 |
0.758 |
|
| 2012 |
Yeh SD, Do T, Chan C, Cordova A, Carranza F, Yamamoto EA, Abbassi M, Gandasetiawan KA, Librado P, Damia E, Dimitri P, Rozas J, Hartl DL, Roote J, Ranz JM. Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition. Proceedings of the National Academy of Sciences of the United States of America. 109: 2043-8. PMID 22308475 DOI: 10.1073/Pnas.1121327109 |
0.734 |
|
| 2012 |
Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. PopDrowser: the Population Drosophila Browser. Bioinformatics (Oxford, England). 28: 595-6. PMID 22180410 DOI: 10.1093/Bioinformatics/Btr691 |
0.785 |
|
| 2012 |
Librado P, Vieira FG, Rozas J. BadiRate: estimating family turnover rates by likelihood-based methods. Bioinformatics (Oxford, England). 28: 279-81. PMID 22080468 DOI: 10.1093/Bioinformatics/Btr623 |
0.829 |
|
| 2012 |
Alvarez-Ponce D, Guirao-Rico S, Orengo DJ, Segarra C, Rozas J, Aguadé M. Molecular population genetics of the insulin/TOR signal transduction pathway: a network-level analysis in Drosophila melanogaster. Molecular Biology and Evolution. 29: 123-32. PMID 21680868 DOI: 10.1093/Molbev/Msr160 |
0.795 |
|
| 2011 |
Vieira FG, Rozas J. Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: origin and evolutionary history of the chemosensory system. Genome Biology and Evolution. 3: 476-90. PMID 21527792 DOI: 10.1093/Gbe/Evr033 |
0.759 |
|
| 2011 |
Alvarez-Presas M, Carbayo F, Rozas J, Riutort M. Land planarians (Platyhelminthes) as a model organism for fine-scale phylogeographic studies: understanding patterns of biodiversity in the Brazilian Atlantic Forest hotspot. Journal of Evolutionary Biology. 24: 887-96. PMID 21288273 DOI: 10.1111/J.1420-9101.2010.02220.X |
0.641 |
|
| 2011 |
Alvarez-Ponce D, Aguadé M, Rozas J. Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: a network-level analysis of selective pressures. Genome Biology and Evolution. 3: 87-101. PMID 21149867 DOI: 10.1093/Gbe/Evq084 |
0.81 |
|
| 2011 |
Sánchez-Gracia A, Rozas J. Molecular population genetics of the OBP83 genomic region in Drosophila subobscura and D. guanche: contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation. Heredity. 106: 191-201. PMID 20332808 DOI: 10.1038/Hdy.2010.26 |
0.853 |
|
| 2010 |
Pérez-Alquicira J, Molina-Freaner FE, Piñero D, Weller SG, Martínez-Meyer E, Rozas J, Domínguez CA. The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert 'Sky Islands'. Journal of Evolutionary Biology. 23: 2163-75. PMID 20840309 DOI: 10.1111/J.1420-9101.2010.02075.X |
0.341 |
|
| 2010 |
Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, ... ... Rozas J, et al. Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 107: 12168-73. PMID 20566863 DOI: 10.1073/Pnas.1003379107 |
0.841 |
|
| 2010 |
Zhou JJ, Vieira FG, He XL, Smadja C, Liu R, Rozas J, Field LM. Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Molecular Biology. 19: 113-22. PMID 20482644 DOI: 10.1111/J.1365-2583.2009.00919.X |
0.742 |
|
| 2010 |
Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. The Drosophila genome variation browser F1000research. 1. DOI: 10.7490/F1000Research.279.1 |
0.777 |
|
| 2009 |
Sánchez-Gracia A, Vieira FG, Rozas J. Molecular evolution of the major chemosensory gene families in insects. Heredity. 103: 208-16. PMID 19436326 DOI: 10.1038/Hdy.2009.55 |
0.854 |
|
| 2009 |
Rozas J. DNA sequence polymorphism analysis using DnaSP. Methods in Molecular Biology (Clifton, N.J.). 537: 337-50. PMID 19378153 DOI: 10.1007/978-1-59745-251-9_17 |
0.322 |
|
| 2009 |
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (Oxford, England). 25: 1451-2. PMID 19346325 DOI: 10.1093/Bioinformatics/Btp187 |
0.706 |
|
| 2009 |
Alvarez-Ponce D, Aguadé M, Rozas J. Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes. Genome Research. 19: 234-42. PMID 19141596 DOI: 10.1101/Gr.084038.108 |
0.814 |
|
| 2008 |
Sánchez-Gracia A, Rozas J. Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes. Bmc Evolutionary Biology. 8: 323. PMID 19038039 DOI: 10.1186/1471-2148-8-323 |
0.853 |
|
| 2008 |
Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics. 179: 555-67. PMID 18493071 DOI: 10.1534/Genetics.107.083006 |
0.784 |
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| 2008 |
Andrés O, Kellermann T, López-Giráldez F, Rozas J, Domingo-Roura X, Bosch M. RPS4Y gene family evolution in primates. Bmc Evolutionary Biology. 8: 142. PMID 18477388 DOI: 10.1186/1471-2148-8-142 |
0.47 |
|
| 2007 |
Vieira FG, Sánchez-Gracia A, Rozas J. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biology. 8: R235. PMID 18039354 DOI: 10.1186/Gb-2007-8-11-R235 |
0.843 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Rozas J, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.852 |
|
| 2007 |
Sánchez-Gracia A, Rozas J. Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans. Genetics. 175: 1923-35. PMID 17277360 DOI: 10.1534/Genetics.106.068015 |
0.837 |
|
| 2006 |
Ojeda A, Rozas J, Folch JM, Pérez-Enciso M. Unexpected high polymorphism at the FABP4 gene unveils a complex history for pig populations. Genetics. 174: 2119-27. PMID 17057239 DOI: 10.1534/Genetics.106.063057 |
0.434 |
|
| 2006 |
Hutter S, Vilella AJ, Rozas J. Genome-wide DNA polymorphism analyses using VariScan. Bmc Bioinformatics. 7: 409. PMID 16968531 DOI: 10.1186/1471-2105-7-409 |
0.797 |
|
| 2006 |
Quesada H, Ramos-Onsins SE, Rozas J, Aguadé M. Positive selection versus demography: evolutionary inferences based on an unusual haplotype structure in Drosophila simulans. Molecular Biology and Evolution. 23: 1643-7. PMID 16757657 DOI: 10.1093/Molbev/Msl031 |
0.815 |
|
| 2005 |
Vilella AJ, Blanco-Garcia A, Hutter S, Rozas J. VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. Bioinformatics (Oxford, England). 21: 2791-3. PMID 15814564 DOI: 10.1093/Bioinformatics/Bti403 |
0.761 |
|
| 2005 |
Munté A, Rozas J, Aguadé M, Segarra C. Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura. Genetics. 169: 1573-81. PMID 15687280 DOI: 10.1534/Genetics.104.032748 |
0.811 |
|
| 2003 |
Sánchez-Gracia A, Aguadé M, Rozas J. Patterns of nucleotide polymorphism and divergence in the odorant-binding protein genes OS-E and OS-F: analysis in the melanogaster species subgroup of Drosophila. Genetics. 165: 1279-88. PMID 14668382 |
0.832 |
|
| 2003 |
Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics (Oxford, England). 19: 2496-7. PMID 14668244 DOI: 10.1093/Bioinformatics/Btg359 |
0.38 |
|
| 2003 |
Quesada H, Ramírez UE, Rozas J, Aguadé M. Large-scale adaptive hitchhiking upon high recombination in Drosophila simulans. Genetics. 165: 895-900. PMID 14573496 |
0.823 |
|
| 2003 |
Pérez JA, Munté A, Rozas J, Segarra C, Aguadé M. Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation. Molecular Biology and Evolution. 20: 1867-75. PMID 12885962 DOI: 10.1093/Molbev/Msg199 |
0.722 |
|
| 2002 |
Ramos-Onsins SE, Rozas J. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution. 19: 2092-100. PMID 12446801 DOI: 10.1093/Oxfordjournals.Molbev.A004034 |
0.762 |
|
| 2001 |
Rozas J, Gullaud M, Blandin G, Aguadé M. DNA variation at the rp49 gene region of Drosophila simulans: evolutionary inferences from an unusual haplotype structure. Genetics. 158: 1147-55. PMID 11454763 |
0.747 |
|
| 2001 |
Khadem M, Rozas J, Segarra C, Aguadé M. DNA variation at the rp49 gene region in Drosophila madeirensis and D. subobscura from Madeira: Inferences about the origin of an insular endemic species Journal of Evolutionary Biology. 14: 379-387. DOI: 10.1046/J.1420-9101.2001.00293.X |
0.804 |
|
| 1999 |
Rozas J, Rozas R. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics (Oxford, England). 15: 174-5. PMID 10089204 DOI: 10.1093/Bioinformatics/15.2.174 |
0.35 |
|
| 1999 |
Rozas J, Segarra C, Ribó G, Aguadé M. Molecular population genetics of the rp49 gene region in different chromosomal inversions of Drosophila subobscura. Genetics. 151: 189-202. PMID 9872959 |
0.763 |
|
| 1998 |
Ramos-Onsins S, Segarra C, Rozas J, Aguadé M. Molecular and chromosomal phylogeny in the obscura group of Drosophila inferred from sequences of the rp49 gene region. Molecular Phylogenetics and Evolution. 9: 33-41. PMID 9479691 DOI: 10.1006/Mpev.1997.0438 |
0.825 |
|
| 1998 |
Khadem M, Rozas J, Segarra C, Brehm A, Aguadé M. Tracing the colonization of Madeira and the Canary Islands by Drosophila subobscura through the study of the rp49 gene region Journal of Evolutionary Biology. 11: 439-452. DOI: 10.1046/J.1420-9101.1998.11040439.X |
0.804 |
|
| 1997 |
Rozas J, Rozas R. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Computer Applications in the Biosciences : Cabios. 13: 307-11. PMID 9183537 |
0.3 |
|
| 1995 |
Rozas J, Rozas R. DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Computer Applications in the Biosciences : Cabios. 11: 621-5. PMID 8808578 DOI: 10.1093/Bioinformatics/11.6.621 |
0.342 |
|
| 1995 |
Rozas J, Segarra C, Zapata C, Alvarez G, Aguade M. Nucleotide Polymorphism at the rp49 region of Drosophila subobscura: Lack of geographic subdivision within chromosomal arrangements in Europe Journal of Evolutionary Biology. 8: 355-367. DOI: 10.1046/J.1420-9101.1995.8030355.X |
0.796 |
|
| 1994 |
Rozas J, Aguadé M. Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 91: 11517-21. PMID 7972094 DOI: 10.1073/Pnas.91.24.11517 |
0.783 |
|
| 1993 |
Rozas J, Aguadé M. Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proceedings of the National Academy of Sciences of the United States of America. 90: 8083-7. PMID 8367467 DOI: 10.1073/Pnas.90.17.8083 |
0.769 |
|
| 1993 |
Larruga JM, Rozas J, Hernández M, González AM, Cabrera VM. Latitudinal differences in sex chromosome inversions, sex linked allozymes, and mitochondrial DNA variation in Drosophila subobscura. Genetica. 92: 67-74. PMID 8163158 DOI: 10.1007/Bf00057509 |
0.383 |
|
| 1991 |
Rozas J, Aguade M. Using restriction-map analysis to characterize the colonization process of Drosophila subobscura on the American continent. I. rp49 region Molecular Biology and Evolution. 8: 447-457. DOI: 10.1093/Oxfordjournals.Molbev.A040668 |
0.306 |
|
| 1990 |
Rozas J, Hernández M, Cabrera VM, Prevosti A. Colonization of America by Drosophila subobscura: effect of the founder event on the mitochondrial DNA polymorphism. Molecular Biology and Evolution. 7: 103-9. PMID 2299979 DOI: 10.1093/Oxfordjournals.Molbev.A040584 |
0.666 |
|
| 1990 |
Rozas J, Aguadé M. Evidence of extensive genetic exchange in the rp49 region among polymorphic chromosome inversions in Drosophila subobscura. Genetics. 126: 417-26. PMID 2123162 |
0.728 |
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