| Year |
Citation |
Score |
| 2020 |
Qiu X, Ma F, Zhao M, Cao Y, Shipp L, Liu A, Dutta A, Singh A, Braikia FZ, De S, Wood WH, Becker KG, Zhou W, Ji H, Zhao K, et al. Altered 3D chromatin structure permits inversional recombination at the locus. Science Advances. 6: eaaz8850. PMID 32851160 DOI: 10.1126/Sciadv.Aaz8850 |
0.305 |
|
| 2020 |
Ji Z, Zhou W, Hou W, Ji H. Single-cell ATAC-seq signal extraction and enhancement with SCATE. Genome Biology. 21: 161. PMID 32620137 DOI: 10.1186/S13059-020-02075-3 |
0.363 |
|
| 2020 |
Lex RK, Ji Z, Falkenstein KN, Zhou W, Henry JL, Ji H, Vokes SA. GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling. Elife. 9. PMID 31989924 DOI: 10.7554/Elife.50670 |
0.366 |
|
| 2019 |
Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, ... ... Ji H, et al. TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision. Immunity. PMID 31606264 DOI: 10.1016/J.Immuni.2019.09.013 |
0.342 |
|
| 2019 |
Zhou W, Ji Z, Fang W, Ji H. Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq. Nucleic Acids Research. PMID 31428792 DOI: 10.1093/Nar/Gkz716 |
0.343 |
|
| 2019 |
Caushi JX, Ji Z, Zhang J, Asmar ME, Anagnostou V, Cottrell TR, Chan HY, Guo H, Merghoub T, Wolchok JD, Naidoo J, Marrone KA, Chaft JE, Hellmann MD, Gabrielson E, ... ... Ji H, et al. Abstract 4041: Coupling neoantigen specific T cell clonotypes and their molecular phenotypes at the single cell level in resectable anti-PD-1 treated NSCLC Cancer Research. 79: 4041-4041. DOI: 10.1158/1538-7445.Am2019-4041 |
0.352 |
|
| 2018 |
Wang J, Zibetti C, Shang P, Sripathi SR, Zhang P, Cano M, Hoang T, Xia S, Ji H, Merbs SL, Zack DJ, Handa JT, Sinha D, Blackshaw S, Qian J. ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration. Nature Communications. 9: 1364. PMID 29636475 DOI: 10.1038/S41467-018-03856-Y |
0.31 |
|
| 2018 |
Kuang Z, Ji Z, Boeke JD, Ji H. Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes. Nucleic Acids Research. 46: e2. PMID 29325176 DOI: 10.1093/Nar/Gkx905 |
0.33 |
|
| 2017 |
Kuang Z, Pinglay S, Ji H, Boeke JD. Msn2/4 regulate expression of glycolytic enzymes and control transition from quiescence to growth. Elife. 6. PMID 28949295 DOI: 10.7554/Elife.29938 |
0.328 |
|
| 2017 |
Ji Z, Zhou W, Ji H. Single-cell regulome data analysis by SCRAT. Bioinformatics (Oxford, England). PMID 28505247 DOI: 10.1093/Bioinformatics/Btx315 |
0.362 |
|
| 2016 |
Wang J, Xia S, Arand B, Zhu H, Machiraju R, Huang K, Ji H, Qian J. Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes. Plos Computational Biology. 12: e1004892. PMID 27100869 DOI: 10.1371/Journal.Pcbi.1004892 |
0.377 |
|
| 2015 |
Ji Z, Vokes SA, Dang CV, Ji H. Turning publicly available gene expression data into discoveries using gene set context analysis. Nucleic Acids Research. PMID 26350211 DOI: 10.1093/Nar/Gkv873 |
0.339 |
|
| 2015 |
Lewandowski JP, Du F, Zhang S, Powell MB, Falkenstein KN, Ji H, Vokes SA. Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Developmental Biology. 406: 92-103. PMID 26238476 DOI: 10.1016/J.Ydbio.2015.07.022 |
0.384 |
|
| 2015 |
Jin K, Park S, Teo WW, Korangath P, Cho SS, Yoshida T, Gyorffy B, Goswami CP, Nakshatri H, Cruz LA, Zhou W, Ji H, Su Y, Ekram M, Wu Z, et al. HOXB7 is an ERα cofactor in the activation of HER2 and multiple ER target genes leading to endocrine resistance. Cancer Discovery. PMID 26180042 DOI: 10.1158/2159-8290.Cd-15-0090 |
0.308 |
|
| 2015 |
Wamaitha SE, Del Valle I, Cho LT, Wei Y, Fogarty NM, Blakeley P, Sherwood RI, Ji H, Niakan KK. Gata6 potently initiates reprograming of pluripotent and differentiated cells to extraembryonic endoderm stem cells. Genes & Development. 29: 1239-55. PMID 26109048 DOI: 10.1101/Gad.257071.114 |
0.381 |
|
| 2014 |
Ying M, Tilghman J, Wei Y, Guerrero-Cazares H, Quinones-Hinojosa A, Ji H, Laterra J. Kruppel-like factor-9 (KLF9) inhibits glioblastoma stemness through global transcription repression and integrin α6 inhibition. The Journal of Biological Chemistry. 289: 32742-56. PMID 25288800 DOI: 10.1074/Jbc.M114.588988 |
0.381 |
|
| 2014 |
Kuang Z, Cai L, Zhang X, Ji H, Tu BP, Boeke JD. High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast. Nature Structural & Molecular Biology. 21: 854-63. PMID 25173176 DOI: 10.1038/Nsmb.2881 |
0.345 |
|
| 2014 |
Wu H, Ji H. Polya peak: Detecting transcription factor binding sites from Ch IP-seq using peak shape information Plos One. 9. PMID 24608116 DOI: 10.1371/Journal.Pone.0089694 |
0.319 |
|
| 2014 |
Fan T, Le A, Stine Z, Yang Y, Zeller K, Zhou W, Ji H, Higashi R, Dang C, Lane A. Antagonistic effects of MYC and hypoxia in channeling glucose and glutamine into de novo nucleotide biosynthesis Cancer & Metabolism. 2: O10. DOI: 10.1186/2049-3002-2-S1-O10 |
0.319 |
|
| 2013 |
Jaffe AE, Storey JD, Ji H, Leek JT. Gene set bagging for estimating the probability a statistically significant result will replicate. Bmc Bioinformatics. 14: 360. PMID 24330332 DOI: 10.1186/1471-2105-14-360 |
0.357 |
|
| 2013 |
Wang J, Park JS, Wei Y, Rajurkar M, Cotton JL, Fan Q, Lewis BC, Ji H, Mao J. TRIB2 acts downstream of Wnt/TCF in liver cancer cells to regulate YAP and C/EBPα function. Molecular Cell. 51: 211-25. PMID 23769673 DOI: 10.1016/J.Molcel.2013.05.013 |
0.315 |
|
| 2013 |
Wei Y, Wu G, Ji H. Global Mapping of Transcription Factor Binding Sites by Sequencing Chromatin Surrogates: a Perspective on Experimental Design, Data Analysis, and Open Problems Statistics in Biosciences. 5: 156-178. PMID 23762209 DOI: 10.1007/S12561-012-9066-5 |
0.393 |
|
| 2013 |
Ji H, Li X, Wang QF, Ning Y. Differential principal component analysis of ChIP-seq Proceedings of the National Academy of Sciences of the United States of America. 110: 6789-6794. PMID 23569280 DOI: 10.1073/Pnas.1204398110 |
0.372 |
|
| 2013 |
Wu G, Yustein JT, McCall MN, Zilliox M, Irizarry RA, Zeller K, Dang CV, Ji H. ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. Bioinformatics (Oxford, England). 29: 1182-1189. PMID 23457041 DOI: 10.1093/Bioinformatics/Btt108 |
0.398 |
|
| 2012 |
Wu H, Ji H. JAMIE: A software tool for jointly analyzing multiple ChIP-chip experiments. Methods in Molecular Biology (Clifton, N.J.). 802: 363-75. PMID 22130893 DOI: 10.1007/978-1-61779-400-1_24 |
0.364 |
|
| 2012 |
Wei Y, Li X, Wang Q, Ji H. iASeq: integrating multiple chip-seq datasets for detecting allele-specific binding Bmc Bioinformatics. 13: 1-1. DOI: 10.1186/1471-2105-13-S18-A6 |
0.322 |
|
| 2011 |
Ji H, Wu G, Zhan X, Nolan A, Koh C, de Marzo A, Doan HM, Fan J, Cheadle C, Fallahi M, Cleveland JL, Dang CV, Zeller KI. Cell-type independent MYC target genes reveal a primordial signature involved in biomass accumulation Plos One. 6. PMID 22039435 DOI: 10.1371/Journal.Pone.0026057 |
0.4 |
|
| 2011 |
Chen L, Wu G, Ji H. hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data Bioinformatics. 27: 1447-1448. PMID 21450710 DOI: 10.1093/Bioinformatics/Btr156 |
0.336 |
|
| 2011 |
Ji H, Jiang H, Ma W, Wong WH. Using CisGenome to analyze ChIP-chip and ChIP-seq data. Current Protocols in Bioinformatics. Unit2.13. PMID 21400695 DOI: 10.1002/0471250953.Bi0213S33 |
0.38 |
|
| 2011 |
Ji H, Wu G, Zhan X, Nolan A, Koh C, Marzo AD, Fan J, Cheadle C, Fallahi M, Cleveland J, Dang CV, Zeller K. Abstract 928: Species and cell type independent core MYC target genes in cancer and stem cells Cancer Research. 71: 928-928. DOI: 10.1158/1538-7445.Am2011-928 |
0.391 |
|
| 2010 |
Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E, Patil S, Kim TW, Ji H, Wong WH, Rhee SY, et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Developmental Cell. 19: 765-77. PMID 21074725 DOI: 10.1016/J.Devcel.2010.10.010 |
0.344 |
|
| 2010 |
Ji H. Computational analysis of ChIP-seq data Methods in Molecular Biology (Clifton, N.J.). 674: 143-159. PMID 20827590 DOI: 10.1007/978-1-60761-854-6_9 |
0.378 |
|
| 2010 |
Huang CR, Schneider AM, Lu Y, Niranjan T, Shen P, Robinson MA, Steranka JP, Valle D, Civin CI, Wang T, Wheelan SJ, Ji H, Boeke JD, Burns KH. Mobile interspersed repeats are major structural variants in the human genome. Cell. 141: 1171-82. PMID 20602999 DOI: 10.1016/J.Cell.2010.05.026 |
0.307 |
|
| 2010 |
Lee EY, Ji H, Ouyang Z, Zhou B, Ma W, Vokes SA, McMahon AP, Wong WH, Scott MP. Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. Proceedings of the National Academy of Sciences of the United States of America. 107: 9736-41. PMID 20460306 DOI: 10.1073/Pnas.1004602107 |
0.404 |
|
| 2010 |
Niakan KK, Ji H, Maehr R, Vokes SA, Rodolfa KT, Sherwood RI, Yamaki M, Dimos JT, Chen AE, Melton DA, McMahon AP, Eggan K. Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal. Genes & Development. 24: 312-26. PMID 20123909 DOI: 10.1101/Gad.1833510 |
0.389 |
|
| 2010 |
Mi S, He F, Wu J, Zhou J, Wu G, Thirman MJ, Ji H, Wang Q. Genome Wide Location Analysis Reveals Deregulated MicroRNA Genes In MLL Rearragned Leukemic Genome Blood. 116: 2507-2507. DOI: 10.1182/Blood.V116.21.2507.2507 |
0.352 |
|
| 2009 |
Wang QJ, Wu G, Mi S, He F, Dong J, Mattison RJ, Kaberlein J, Wang Q, Prabhakar S, Ji H, Thirman MJ. MLL Fusion Proteins Directly Regulate a Small Set of Wild Type MLL Target Genes. Blood. 114: 1279-1279. DOI: 10.1182/Blood.V114.22.1279.1279 |
0.415 |
|
| 2008 |
Vokes SA, Ji H, Wong WH, McMahon AP. A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb. Genes & Development. 22: 2651-63. PMID 18832070 DOI: 10.1101/Gad.1693008 |
0.392 |
|
| 2007 |
Vokes SA, Ji H, McCuine S, Tenzen T, Giles S, Zhong S, Longabaugh WJ, Davidson EH, Wong WH, McMahon AP. Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Development (Cambridge, England). 134: 1977-89. PMID 17442700 DOI: 10.1242/Dev.001966 |
0.381 |
|
| 2007 |
Paik JH, Kollipara R, Chu G, Ji H, Xiao Y, Ding Z, Miao L, Tothova Z, Horner JW, Carrasco DR, Jiang S, Gilliland DG, Chin L, Wong WH, Castrillon DH, et al. FoxOs are lineage-restricted redundant tumor suppressors and regulate endothelial cell homeostasis. Cell. 128: 309-23. PMID 17254969 DOI: 10.1016/J.Cell.2006.12.029 |
0.348 |
|
| 2006 |
Kim RS, Ji H, Wong WH. An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. Bmc Bioinformatics. 7: 44. PMID 16438730 DOI: 10.1186/1471-2105-7-44 |
0.394 |
|
| 2005 |
Ji H, Wong WH. TileMap: Create chromosomal map of tiling array hybridizations Bioinformatics. 21: 3629-3636. PMID 16046496 DOI: 10.1093/Bioinformatics/Bti593 |
0.35 |
|
| 2001 |
Ji H, Zhou Q, Wen F, Xia H, Lu X, Li Y. AsMamDB: an alternative splice database of mammals Nucleic Acids Research. 29: 260-263. PMID 11125106 DOI: 10.1093/Nar/29.1.260 |
0.354 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2011 |
Wang QF, Wu G, Mi S, He F, Wu J, Dong J, Luo RT, Mattison R, Kaberlein JJ, Prabhakar S, Ji H, Thirman MJ. MLL fusion proteins preferentially regulate a subset of wild-type MLL target genes in the leukemic genome. Blood. 117: 6895-905. PMID 21518926 DOI: 10.1182/blood-2010-12-324699 |
0.296 |
|
| 2021 |
Sinha S, Satpathy AT, Zhou W, Ji H, Stratton JA, Jaffer A, Bahlis N, Morrissy S, Biernaskie JA. Profiling Chromatin Accessibility at Single-cell Resolution. Genomics, Proteomics & Bioinformatics. PMID 33581341 DOI: 10.1016/j.gpb.2020.06.010 |
0.295 |
|
| 1993 |
Ji H, Moore DP, Blomberg MA, Braiterman LT, Voytas DF, Natsoulis G, Boeke JD. Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences Cell. 73: 1007-1018. PMID 8388781 DOI: 10.1016/0092-8674(93)90278-X |
0.295 |
|
| 2023 |
Qi G, Strober BJ, Popp JM, Keener R, Ji H, Battle A. Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects. Nature Communications. 14: 6317. PMID 37813843 DOI: 10.1038/s41467-023-42016-9 |
0.293 |
|
| 2019 |
Lex RK, Ji Z, Falkenstein KN, Zhou W, Henry JL, Ji H, Vokes SA. Author response: GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling Elife. DOI: 10.7554/Elife.50670.Sa2 |
0.292 |
|
| 2013 |
Wu G, Ji H. ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking. Bmc Bioinformatics. 14: 188. PMID 23758851 DOI: 10.1186/1471-2105-14-188 |
0.292 |
|
| 2006 |
Ji H, Vokes SA, Wong WH. A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors. Nucleic Acids Research. 34: e146. PMID 17090591 DOI: 10.1093/Nar/Gkl803 |
0.283 |
|
| 2005 |
Mikkelsen TS, Hillier LW, Eichler EE, Zody MC, Jaffe DB, Yang S, Enard W, Hellmann I, Lindblad-Toh K, Altheide TK, Archidiacono N, Bork P, Butler J, Chang JL, Cheng Z, ... ... Ji H, et al. Initial sequence of the chimpanzee genome and comparison with the human genome Nature. 437: 69-87. PMID 16136131 DOI: 10.1038/Nature04072 |
0.283 |
|
| 2016 |
Shi J, Hua X, Goedert JJ, Landi MT, Äijö T, Bonneau R, Zhou W, Sherwood B, Ji H, Zappala Z, Montgomery SB, Wang X, Xiao R, Zhu X, Li M, et al. SAGES 2015. Symposium of Advances in Genomics, Epidemiology and Statistics 2015: Abstracts Human Heredity. 81: 51-61. PMID 28076868 DOI: 10.1159/000447110 |
0.281 |
|
| 2020 |
Hong X, Surkan P, Zhang B, Keiser A, Ji Y, Ji H, Burd I, Bustamante-Helfrich B, Ogunwole S, Tang WY, Liu L, Pearson C, Cerda S, Zuckerman B, Hao L, et al. Genome-wide association study identifies a novel maternal gene × stress interaction associated with spontaneous preterm birth. Pediatric Research. PMID 32726798 DOI: 10.1038/S41390-020-1093-1 |
0.28 |
|
| 2013 |
Kano S, Colantuoni C, Han F, Zhou Z, Yuan Q, Wilson A, Takayanagi Y, Lee Y, Rapoport J, Eaton W, Cascella N, Ji H, Goldman D, Sawa A. Genome-wide profiling of multiple histone methylations in olfactory cells: further implications for cellular susceptibility to oxidative stress in schizophrenia. Molecular Psychiatry. 18: 740-2. PMID 22925834 DOI: 10.1038/Mp.2012.120 |
0.279 |
|
| 2019 |
Caushi J, Ji Z, Zhang J, Asmar ME, Anagnostou V, Cottrell T, Chan HY, Guo H, Merghoub T, Wolchok J, Naidoo J, Marrone K, Chaft J, Hellmann M, Gabrielson E, ... ... Ji H, et al. P2.04-24 Transcriptional Profiling of Neoantigen Specific T Cells in Resectable NSCLC Treated with Neoadjuvant Anti-PD-1 Journal of Thoracic Oncology. 14. DOI: 10.1016/J.Jtho.2019.08.1529 |
0.278 |
|
| 2020 |
Hou W, Ji Z, Ji H, Hicks SC. A systematic evaluation of single-cell RNA-sequencing imputation methods. Genome Biology. 21: 218. PMID 32854757 DOI: 10.1186/S13059-020-02132-X |
0.274 |
|
| 2009 |
Judy JT, Ji H. TileProbe: modeling tiling array probe effects using publicly available data. Bioinformatics (Oxford, England). 25: 2369-75. PMID 19592393 DOI: 10.1093/Bioinformatics/Btp425 |
0.264 |
|
| 2023 |
Zhao M, Chauhan P, Sherman CA, Singh A, Kaileh M, Mazan-Mamczarz K, Ji H, Joy J, Nandi S, De S, Zhang Y, Fan J, Becker KG, Loke P, Zhou W, et al. NF-κB subunits direct kinetically distinct transcriptional cascades in antigen receptor-activated B cells. Nature Immunology. PMID 37524800 DOI: 10.1038/s41590-023-01561-7 |
0.263 |
|
| 2005 |
Hellmann I, Prüfer K, Ji H, Zody MC, Pääbo S, Ptak SE. Why do human diversity levels vary at a megabase scale? Genome Research. 15: 1222-31. PMID 16140990 DOI: 10.1101/Gr.3461105 |
0.263 |
|
| 2019 |
Zhang J, Ji Z, Caushi JX, El Asmar M, Anagnostou V, Cottrell TR, Chan HY, Suri P, Guo H, Merghoub T, Chaft JE, Reuss JE, Tam AJ, Blosser RL, Abu-Akeel M, ... ... Ji H, et al. Compartmental analysis of T cell clonal dynamics as a function of pathologic response to neoadjuvant PD-1 blockade in resectable non-small cell lung cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31754049 DOI: 10.1158/1078-0432.Ccr-19-2931 |
0.263 |
|
| 2022 |
Lex RK, Zhou W, Ji Z, Falkenstein KN, Schuler KE, Windsor KE, Kim JD, Ji H, Vokes SA. GLI transcriptional repression is inert prior to Hedgehog pathway activation. Nature Communications. 13: 808. PMID 35145123 DOI: 10.1038/s41467-022-28485-4 |
0.259 |
|
| 2010 |
Wu H, Ji H. JAMIE: joint analysis of multiple ChIP-chip experiments. Bioinformatics (Oxford, England). 26: 1864-70. PMID 20551135 DOI: 10.1093/bioinformatics/btq314 |
0.258 |
|
| 2006 |
Vokes SA, Ji H, Wong WH, McMahon AP. A tale of two morphogen gradients: Identifying Gli targets of Hedgehog Signaling Developmental Biology. 295: 423. DOI: 10.1016/J.Ydbio.2006.04.301 |
0.256 |
|
| 2014 |
Wei Y, Tenzen T, Ji H. Joint analysis of differential gene expression in multiple studies using correlation motifs. Biostatistics (Oxford, England). 16: 31-46. PMID 25143368 DOI: 10.1093/biostatistics/kxu038 |
0.252 |
|
| 2021 |
Chamling X, Kallman A, Fang W, Berlinicke CA, Mertz JL, Devkota P, Pantoja IEM, Smith MD, Ji Z, Chang C, Kaushik A, Chen L, Whartenby KA, Calabresi PA, Mao HQ, ... Ji H, et al. Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells. Nature Communications. 12: 652. PMID 33510160 DOI: 10.1038/s41467-021-20892-3 |
0.25 |
|
| 2023 |
Ramachandran J, Chen W, Lex RK, Windsor KE, Lee H, Wang T, Zhou W, Ji H, Vokes SA. The BAF chromatin complex component SMARCC1 does not mediate GLI transcriptional repression of Hedgehog target genes in limb buds. Developmental Biology. 504: 128-136. PMID 37805104 DOI: 10.1016/j.ydbio.2023.10.001 |
0.248 |
|
| 2018 |
Asmar ME, Zhang J, Caushi J, Ji Z, Anagnostou V, Cottrell T, Chan HY, Suri P, Guo H, Marrone K, Naidoo J, Merghoub T, Chaft J, Hellmann M, Taube J, ... ... Ji H, et al. MA04.11 Neoantigen Targeting and T Cell Reshaping in Resectable NSCLC Patients Treated with Neoadjuvant PD-1 Blockade Journal of Thoracic Oncology. 13. DOI: 10.1016/J.Jtho.2018.08.348 |
0.247 |
|
| 2016 |
Li Q, Lex RK, Chung H, Giovanetti SM, Ji Z, Ji H, Person MD, Kim J, Vokes SA. NANOG binds to GLI proteins and represses Hedgehog-mediated transcription. The Journal of Biological Chemistry. PMID 26797124 DOI: 10.1074/Jbc.M116.714857 |
0.245 |
|
| 2015 |
Zhang S, Du F, Ji H. A novel DNA sequence motif in human and mouse genomes. Scientific Reports. 5: 10444. PMID 25990515 DOI: 10.1038/srep10444 |
0.244 |
|
| 2013 |
Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, ... ... Ji H, et al. Construction of human activity-based phosphorylation networks. Molecular Systems Biology. 9: 655. PMID 23549483 DOI: 10.1038/Msb.2013.12 |
0.244 |
|
| 2008 |
Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH. An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nature Biotechnology. 26: 1293-300. PMID 18978777 DOI: 10.1038/Nbt.1505 |
0.241 |
|
| 2017 |
Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, Ying M, Ji H. Genome-wide prediction of DNase I hypersensitivity using gene expression. Nature Communications. 8: 1038. PMID 29051481 DOI: 10.1038/s41467-017-01188-x |
0.239 |
|
| 2018 |
Zhang B, Hong X, Ji H, Tang WY, Kimmel M, Ji Y, Pearson C, Zuckerman B, Surkan PJ, Wang X. Maternal Smoking during Pregnancy and Cord Blood DNA Methylation: New Insight on Sex Differences and Effect Modification by Maternal Folate Levels. Epigenetics. PMID 29945474 DOI: 10.1080/15592294.2018.1475978 |
0.238 |
|
| 2019 |
Zhang J, Ji Z, Caushi J, Asmar ME, Anagnostou V, Cottrell T, Chan HY, Guo H, Merghoub T, Chaft J, Wolchok J, Reuss J, Marrone K, Naidoo J, Gabrielson E, ... ... Ji H, et al. MA11.10 Peripheral T Cell Repertoire Evolution in Resectable NSCLC Treated with Neoadjuvant PD-1 Blockade Journal of Thoracic Oncology. 14. DOI: 10.1016/J.Jtho.2019.08.590 |
0.236 |
|
| 2006 |
Ji H, Wong WH. Computational biology: Toward deciphering gene regulatory information in mammalian genomes Biometrics. 62. PMID 16984301 DOI: 10.1111/j.1541-0420.2006.00625.x |
0.233 |
|
| 2013 |
Ji H, Li X, Wang QF, Ning Y. Erratum: Differential principal component analysis of ChIP-seq (Proceedings of the National Academy of Sciences of the United States of America (2013) 110 (6789-6794) DOI: 10.1073/pnas.1204398110) Proceedings of the National Academy of Sciences of the United States of America. 110. DOI: 10.1073/Pnas.1311209110 |
0.233 |
|
| 2023 |
Ramachandran J, Chen W, Lex RK, Windsor KE, Lee H, Wang T, Zhou W, Ji H, Vokes SA. BAF chromatin complexes do not mediate GLI transcriptional repression of Hedgehog target genes. Biorxiv : the Preprint Server For Biology. PMID 36798239 DOI: 10.1101/2023.02.03.527038 |
0.232 |
|
| 2019 |
Ji Z, Ji H. Pseudotime Reconstruction Using TSCAN. Methods in Molecular Biology (Clifton, N.J.). 1935: 115-124. PMID 30758823 DOI: 10.1007/978-1-4939-9057-3_8 |
0.232 |
|
| 2017 |
Kuang Z, Pinglay S, Ji H, Boeke JD. Author response: Msn2/4 regulate expression of glycolytic enzymes and control transition from quiescence to growth Elife. DOI: 10.7554/Elife.29938.025 |
0.23 |
|
| 2019 |
Surkan PJ, Hong X, Zhang B, Nawa N, Ji H, Tang WY, Ji Y, Kimmel MC, Wang G, Pearson C, Wang X. Can social support during pregnancy affect maternal DNA methylation? Findings from a cohort of African-Americans. Pediatric Research. PMID 31349361 DOI: 10.1038/S41390-019-0512-7 |
0.229 |
|
| 2018 |
Kuang Z, Ji H, Boeke JD. Stress response factors drive regrowth of quiescent cells. Current Genetics. PMID 29455333 DOI: 10.1007/S00294-018-0813-0 |
0.227 |
|
| 2017 |
Martos SN, Li T, Ramos RB, Lou D, Dai H, Xu JC, Gao G, Gao Y, Wang Q, An C, Zhang X, Jia Y, Dawson VL, Dawson TM, Ji H, et al. Two approaches reveal a new paradigm of 'switchable or genetics-influenced allele-specific DNA methylation' with potential in human disease. Cell Discovery. 3: 17038. PMID 29387450 DOI: 10.1038/Celldisc.2017.38 |
0.22 |
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| 2024 |
Hong X, Nadeau K, Wang G, Larman B, Smith KN, Pearson C, Ji H, Frischmeyer-Guerrerio P, Liang L, Hu FB, Wang X. Metabolomic Profiles during Early Childhood and Risk of Food Allergies and Asthma in Multi-ethnic Children from a Prospective Birth Cohort. The Journal of Allergy and Clinical Immunology. PMID 38548091 DOI: 10.1016/j.jaci.2024.02.024 |
0.051 |
|
| 2020 |
Wang G, Tang WY, Ji H, Wang X. Prenatal exposure to mercury and precocious puberty: a prospective birth cohort study. Human Reproduction (Oxford, England). PMID 33367618 DOI: 10.1093/humrep/deaa315 |
0.046 |
|
| 2018 |
Qian H, Tong H, He MZ, Ji HK, Zhou LJ, Xu M, Miao XS. Observation of carrier localization in cubic crystalline Ge2Sb2Te5 by field effect measurement. Scientific Reports. 8: 486. PMID 29323199 DOI: 10.1038/s41598-017-18964-w |
0.043 |
|
| 2022 |
Liu Q, Miao H, Li S, Zhang P, Gerber GF, Follmann D, Ji H, Zeger SL, Chertow DS, Quinn TC, Robinson ML, Kickler TS, Rothman RE, Fenstermacher KZJ, Braunstein EM, et al. Anti-PF4 antibodies associated with disease severity in COVID-19. Proceedings of the National Academy of Sciences of the United States of America. 119: e2213361119. PMID 36322776 DOI: 10.1073/pnas.2213361119 |
0.043 |
|
| 2022 |
Frumento N, Figueroa A, Wang T, Zahid MN, Wang S, Massaccesi G, Stavrakis G, Crowe JE, Flyak AI, Ji H, Ray SC, Shaw G, Cox AL, Bailey JR. Repeated exposure to heterologous hepatitis C viruses associates with enhanced neutralizing antibody breadth and potency. The Journal of Clinical Investigation. PMID 35588376 DOI: 10.1172/JCI160058 |
0.042 |
|
| 2022 |
Hou W, Zhang M, Ji Y, Hong X, Wang G, Xu R, Liang L, Saria S, Ji H. A prospective birth cohort study of maternal prenatal cigarette smoking assessed by self-report and biomarkers on childhood risk of overweight or obesity. Precision Nutrition. 1. PMID 36970370 |
0.042 |
|
| 2016 |
Ji HK, Tong H, Qian H, Hui YJ, Liu N, Yan P, Miao XS. Non-binary Colour Modulation for Display Device Based on Phase Change Materials. Scientific Reports. 6: 39206. PMID 27991523 DOI: 10.1038/srep39206 |
0.04 |
|
| 2022 |
Hou W, Zhang M, Ji Y, Hong X, Wang G, Xu R, Liang L, Saria S, Ji H. A prospective birth cohort study of maternal prenatal cigarette smoking assessed by self-report and biomarkers on childhood risk of overweight or obesity. Precision Nutrition. 1: e00017. PMID 37744083 DOI: 10.1097/PN9.0000000000000017 |
0.039 |
|
| 2021 |
Turnbull AE, Ji H, Dinglas VD, Wu AW, Mendez-Tellez PA, Himmelfarb CD, Shanholtz CB, Hosey MM, Hopkins RO, Needham DM. Understanding patients' perceived health after critical illness: analysis of two prospective, longitudinal studies of ARDS survivors. Chest. PMID 34419426 DOI: 10.1016/j.chest.2021.07.2177 |
0.034 |
|
| 2018 |
Tsai HJ, Wang G, Hong X, Yao TC, Ji Y, Radovick S, Ji H, Cheng TL, Wang X. Early Life Weight Gain and Development of Childhood Asthma in a Prospective Birth Cohort. Annals of the American Thoracic Society. PMID 29979628 DOI: 10.1513/AnnalsATS.201712-921OC |
0.033 |
|
| 2024 |
Roznik K, Andargie TE, Johnston TS, Gordon O, Wang Y, Peart Akindele N, Persaud D, Antar AAR, Manabe YC, Zhou W, Ji H, Agbor-Enoh S, Karaba AH, Thompson EA, Cox AL. Emergency myelopoiesis distinguishes multisystem inflammatory syndrome in children from pediatric severe COVID-19. The Journal of Infectious Diseases. PMID 38299308 DOI: 10.1093/infdis/jiae032 |
0.02 |
|
| 2021 |
Peart Akindele N, Kouo T, Karaba AH, Gordon O, Fenstermacher KZJ, Beaudry J, Rubens JH, Atik CC, Zhou W, Ji H, Tao X, Vaidya D, Mostafa H, Caturegli P, Blair PW, et al. Distinct Cytokine and Chemokine Dysregulation in Hospitalized Children With Acute Coronavirus Disease 2019 and Multisystem Inflammatory Syndrome With Similar Levels of Nasopharyngeal Severe Acute Respiratory Syndrome Coronavirus 2 Shedding. The Journal of Infectious Diseases. 224: 606-615. PMID 34398245 DOI: 10.1093/infdis/jiab285 |
0.015 |
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