| Year |
Citation |
Score |
| 2019 |
Kenderdine T, Nemati R, Baker A, Palmer M, Ujma J, Fitzgibbon M, Deng L, Royzen M, Langridge J, Fabris D. High-Resolution Ion Mobility Spectrometry-Mass Spectrometry of Isomeric/Isobaric Ribonucleotide Variants. Journal of Mass Spectrometry : Jms. PMID 31697854 DOI: 10.1002/Jms.4465 |
0.444 |
|
| 2019 |
Myers CA, D'Esposito RJ, Fabris D, Ranganathan SV, Chen AA. CoSIMS: An Optimized Trajectory Based Collision Simulator for Ion Mobility Spectrometry. The Journal of Physical Chemistry. B. PMID 31042389 DOI: 10.1021/Acs.Jpcb.9B01018 |
0.715 |
|
| 2018 |
Kenderdine T, Xia Z, Williams ER, Fabris D. Submicrometer Nanospray Emitters Provide New Insights into the Mechanism of Cation Adduction to Anionic Oligonucleotides. Analytical Chemistry. PMID 30351906 DOI: 10.1021/Acs.Analchem.8B03632 |
0.364 |
|
| 2018 |
Scalabrin M, Dixit SM, Makshood MM, Krzemien CE, Fabris D. Bifunctional cross-linking approaches for mass spectrometry-based investigation of nucleic acids and protein-nucleic acid assemblies. Methods (San Diego, Calif.). PMID 29753003 DOI: 10.1016/J.Ymeth.2018.05.001 |
0.436 |
|
| 2018 |
Wang R, Ranganathan SV, Haruehanroengra P, Mao S, Scalabrin M, Fabris D, Chen A, Liu H, Hassan AEA, Gan J, Sheng J. Construction and Structure Studies of DNA-bipyridine Complexes as Versatile Scaffolds for Site-Specific Incorporation of Metal Ions into DNA. Journal of Biomolecular Structure & Dynamics. 1-56. PMID 29447072 DOI: 10.1080/07391102.2018.1441071 |
0.303 |
|
| 2017 |
Vangaveti S, D'Esposito RJ, Lippens JL, Fabris D, Ranganathan SV. A coarse-grained model for assisting the investigation of structure and dynamics of large nucleic acids by ion mobility spectrometry-mass spectrometry. Physical Chemistry Chemical Physics : Pccp. PMID 28374022 DOI: 10.1039/C7Cp00717E |
0.737 |
|
| 2016 |
Spell SR, Mangrum JB, Peterson EJ, Fabris D, Ptak R, Farrell NP. Au(iii) compounds as HIV nucleocapsid protein (NCp7)-nucleic acid antagonists. Chemical Communications (Cambridge, England). PMID 27858001 DOI: 10.1039/C6Cc07970A |
0.331 |
|
| 2016 |
Garabedian A, Butcher D, Lippens JL, Miksovska J, Chapagain PP, Fabris D, Ridgeway ME, Park MA, Fernandez-Lima F. Structures of the kinetically trapped i-motif DNA intermediates. Physical Chemistry Chemical Physics : Pccp. 18: 26691-26702. PMID 27711445 DOI: 10.1039/C6Cp04418B |
0.37 |
|
| 2016 |
Xue J, Manigrasso M, Scalabrin M, Rai V, Reverdatto S, Burz DS, Fabris D, Schmidt AM, Shekhtman A. Change in the Molecular Dimension of a RAGE-Ligand Complex Triggers RAGE Signaling. Structure (London, England : 1993). PMID 27524199 DOI: 10.1016/J.Str.2016.06.021 |
0.306 |
|
| 2016 |
Lippens JL, Ranganathan SV, D'Esposito RJ, Fabris D. Modular calibrant sets for the structural analysis of nucleic acids by ion mobility spectrometry mass spectrometry. The Analyst. PMID 27152369 DOI: 10.1039/C6An00453A |
0.731 |
|
| 2016 |
Lippens JL, Mangrum JB, McIntyre W, Redick B, Fabris D. A simple heated-capillary modification improves the analysis of non-covalent complexes by Z-spray electrospray ionization. Rapid Communications in Mass Spectrometry : Rcm. 30: 773-83. PMID 26864529 DOI: 10.1002/Rcm.7490 |
0.372 |
|
| 2016 |
Rose RE, Pazos MA, Curcio MJ, Fabris D. Global Epitranscriptomics Profiling of RNA Post-Transcriptional Modifications as an Effective Tool for Investigating the Epitranscriptomics of Stress Response. Molecular & Cellular Proteomics : McP. 15: 932-44. PMID 26733207 DOI: 10.1074/Mcp.M115.054718 |
0.311 |
|
| 2016 |
Sosic A, Sinigaglia L, Cappellini M, Carli I, Parolin C, Zagotto G, Sabatino G, Rovero P, Fabris D, Gatto B. Mechanisms of HIV-1 Nucleocapsid Protein Inhibition by Lysyl-Peptidyl-Anthraquinone Conjugates. Bioconjugate Chemistry. 27: 247-56. PMID 26666402 DOI: 10.1021/Acs.Bioconjchem.5B00627 |
0.363 |
|
| 2015 |
Rose RE, Quinn R, Sayre JL, Fabris D. Erratum: Profiling ribonucleotide modifications at full-transcriptome level: a step toward MS-based epitranscriptomics. Rna (New York, N.Y.). 21: 2143. PMID 26574519 DOI: 10.1261/Rna.054908.115 |
0.415 |
|
| 2015 |
Rose RE, Quinn R, Sayre JL, Fabris D. Profiling ribonucleotide modifications at full-transcriptome level: a step toward MS-based epitranscriptomics. Rna (New York, N.Y.). 21: 1361-74. PMID 25995446 DOI: 10.1261/rna.049429.114 |
0.305 |
|
| 2014 |
Scalabrin M, Siu Y, Asare-Okai PN, Fabris D. Structure-specific ribonucleases for MS-based elucidation of higher-order RNA structure. Journal of the American Society For Mass Spectrometry. 25: 1136-45. PMID 24845355 DOI: 10.1007/S13361-014-0911-2 |
0.442 |
|
| 2014 |
Stephenson W, Asare-Okai PN, Tenenbaum S, Fabris D, Li PT. Comparing RNA Kissing Interactions at Single-Molecule and Ensemble Levels Biophysical Journal. 106: 283a-284a. DOI: 10.1016/J.Bpj.2013.11.1659 |
0.363 |
|
| 2013 |
Quinn R, Basanta-Sanchez M, Rose RE, Fabris D. Direct infusion analysis of nucleotide mixtures of very similar or identical elemental composition. Journal of Mass Spectrometry : Jms. 48: 703-12. PMID 23722961 DOI: 10.1002/Jms.3207 |
0.434 |
|
| 2013 |
Stephenson W, Asare-Okai PN, Chen AA, Keller S, Santiago R, Tenenbaum SA, Garcia AE, Fabris D, Li PT. The essential role of stacking adenines in a two-base-pair RNA kissing complex. Journal of the American Chemical Society. 135: 5602-11. PMID 23517345 DOI: 10.1021/Ja310820H |
0.388 |
|
| 2013 |
Li PT, Stephenson W, Nii Asare-Okai P, Chen AA, Tenenbaum S, Garcia AE, Fabris D. The Essential Adenosine Stacking in a Two-Base-Pair Minimal Kissing Complex Biophysical Journal. 104: 411a. DOI: 10.1080/07391102.2013.786474 |
0.353 |
|
| 2012 |
Fabris D, Kellersberger KA, Wilhide JA. Higher-order structure of nucleic acids in the gas phase: top-down analysis of base-pairing interactions. International Journal of Mass Spectrometry. 312: 155-162. PMID 24027423 DOI: 10.1016/J.Ijms.2011.07.014 |
0.456 |
|
| 2011 |
Fabris D. MS analysis of nucleic acids in the post-genomic era. Analytical Chemistry. 83: 5810-6. PMID 21651236 DOI: 10.1021/Ac200374Y |
0.37 |
|
| 2011 |
Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF. The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Research. 39: D195-201. PMID 21071406 DOI: 10.1093/Nar/Gkq1028 |
0.321 |
|
| 2010 |
Fabris D, Yu ET. Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D. Journal of Mass Spectrometry : Jms. 45: 841-60. PMID 20648672 DOI: 10.1002/Jms.1762 |
0.442 |
|
| 2010 |
Fabris D, Limbach PA. Review of the 22nd sanibel conference on mass spectrometry: From structural biology to drug discovery: New roles for mass spectrometry of nucleic acids Journal of the American Society For Mass Spectrometry. 21. PMID 20363647 DOI: 10.1016/J.Jasms.2010.03.001 |
0.367 |
|
| 2010 |
Fabris D. A role for the MS analysis of nucleic acids in the post-genomics age. Journal of the American Society For Mass Spectrometry. 21: 1-13. PMID 19897384 DOI: 10.1016/J.Jasms.2009.09.006 |
0.371 |
|
| 2009 |
Fabris D, Marino JP, Le Grice SF. Revisiting plus-strand DNA synthesis in retroviruses and long terminal repeat retrotransposons: dynamics of enzyme: substrate interactions. Viruses. 1: 657-77. PMID 21994564 DOI: 10.3390/V1030657 |
0.353 |
|
| 2009 |
Turner KB, Yi-Brunozzi HY, Brinson RG, Marino JP, Fabris D, Le Grice SF. SHAMS: combining chemical modification of RNA with mass spectrometry to examine polypurine tract-containing RNA/DNA hybrids. Rna (New York, N.Y.). 15: 1605-13. PMID 19535461 DOI: 10.1261/Rna.1615409 |
0.402 |
|
| 2009 |
Brinson RG, Turner KB, Yi-Brunozzi HY, Le Grice SF, Fabris D, Marino JP. Probing anomalous structural features in polypurine tract-containing RNA-DNA hybrids with neomycin B. Biochemistry. 48: 6988-97. PMID 19449839 DOI: 10.1021/Bi900357J |
0.365 |
|
| 2009 |
Turner KB, Kohlway AS, Hagan NA, Fabris D. Noncovalent probes for the investigation of structure and dynamics of protein-nucleic acid assemblies: the case of NC-mediated dimerization of genomic RNA in HIV-1. Biopolymers. 91: 283-96. PMID 18946871 DOI: 10.1002/Bip.21107 |
0.419 |
|
| 2008 |
Yu ET, Hawkins A, Kuntz ID, Rahn LA, Rothfuss A, Sale K, Young MM, Yang CL, Pancerella CM, Fabris D. The collaboratory for MS3D: a new cyberinfrastructure for the structural elucidation of biological macromolecules and their assemblies using mass spectrometry-based approaches. Journal of Proteome Research. 7: 4848-57. PMID 18817429 DOI: 10.1021/Pr800443F |
0.672 |
|
| 2008 |
Zhang Q, Crosland E, Fabris D. Nested Arg-specific bifunctional crosslinkers for MS-based structural analysis of proteins and protein assemblies. Analytica Chimica Acta. 627: 117-28. PMID 18790135 DOI: 10.1016/J.Aca.2008.05.074 |
0.638 |
|
| 2008 |
Turner KB, Monti SA, Fabris D. Like polarity ion/ion reactions enable the investigation of specific metal interactions in nucleic acids and their noncovalent assemblies. Journal of the American Chemical Society. 130: 13353-63. PMID 18785739 DOI: 10.1021/Ja8045734 |
0.406 |
|
| 2008 |
Legiewicz M, Badorrek CS, Turner KB, Fabris D, Hamm TE, Rekosh D, Hammarskjöld ML, Le Grice SF. Resistance to RevM10 inhibition reflects a conformational switch in the HIV-1 Rev response element. Proceedings of the National Academy of Sciences of the United States of America. 105: 14365-70. PMID 18776047 DOI: 10.1073/Pnas.0804461105 |
0.336 |
|
| 2008 |
Holland R, Hawkins AE, Eggler AL, Mesecar AD, Fabris D, Fishbein JC. Prospective type 1 and type 2 disulfides of Keap1 protein. Chemical Research in Toxicology. 21: 2051-60. PMID 18729328 DOI: 10.1021/Tx800226M |
0.659 |
|
| 2008 |
Yu ET, Hawkins A, Eaton J, Fabris D. MS3D structural elucidation of the HIV-1 packaging signal. Proceedings of the National Academy of Sciences of the United States of America. 105: 12248-53. PMID 18713870 DOI: 10.1073/Pnas.0800509105 |
0.686 |
|
| 2007 |
Fabris D, Chaudhari P, Hagan N, Turner K. Functional investigations of retroviral proteinribonucleic acid complexes by nanospray Fourier transform ion cyclotron resonance mass spectrometry. European Journal of Mass Spectrometry (Chichester, England). 13: 29-33. PMID 17878535 DOI: 10.1255/Ejms.839 |
0.401 |
|
| 2007 |
Turner KB, Hagan NA, Fabris D. Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein. Journal of Molecular Biology. 369: 812-28. PMID 17466332 DOI: 10.1016/J.Jmb.2007.03.065 |
0.425 |
|
| 2007 |
Hagan NA, Fabris D. Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1. Journal of Molecular Biology. 365: 396-410. PMID 17070549 DOI: 10.1016/J.Jmb.2006.09.081 |
0.383 |
|
| 2006 |
Zhang Q, Yu ET, Kellersberger KA, Crosland E, Fabris D. Toward building a database of bifunctional probes for the MS3D investigation of nucleic acids structures. Journal of the American Society For Mass Spectrometry. 17: 1570-81. PMID 16875836 DOI: 10.1016/J.Jasms.2006.06.002 |
0.614 |
|
| 2006 |
Turner KB, Hagan NA, Kohlway AS, Fabris D. Mapping noncovalent ligand binding to stemloop domains of the HIV-1 packaging signal by tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 1401-11. PMID 16872834 DOI: 10.1016/J.Jasms.2006.06.009 |
0.37 |
|
| 2006 |
Turner KB, Hagan NA, Fabris D. Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Psi-RNA. Nucleic Acids Research. 34: 1305-16. PMID 16522643 DOI: 10.1093/Nar/Gkl004 |
0.378 |
|
| 2006 |
Fisher RJ, Fivash MJ, Stephen AG, Hagan NA, Shenoy SR, Medaglia MV, Smith LR, Worthy KM, Simpson JT, Shoemaker R, McNitt KL, Johnson DG, Hixson CV, Gorelick RJ, Fabris D, et al. Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides. Nucleic Acids Research. 34: 472-84. PMID 16434700 DOI: 10.1093/Nar/Gkj442 |
0.331 |
|
| 2006 |
Rait VK, Zhang Q, Fabris D, Mason JT, O'Leary TJ. Conversions of formaldehyde-modified 2'-deoxyadenosine 5'-monophosphate in conditions modeling formalin-fixed tissue dehydration. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 54: 301-10. PMID 16116034 DOI: 10.1369/Jhc.5A6725.2005 |
0.573 |
|
| 2005 |
Akinsiku OT, Yu ET, Fabris D. Mass spectrometric investigation of protein alkylation by the RNA footprinting probe kethoxal. Journal of Mass Spectrometry : Jms. 40: 1372-81. PMID 16237662 DOI: 10.1002/Jms.932 |
0.439 |
|
| 2005 |
Kellersberger KA, Yu ET, Merenbloom SI, Fabris D. Atmospheric pressure MALDI-FTMS of normal and chemically modified RNA. Journal of the American Society For Mass Spectrometry. 16: 199-207. PMID 15694770 DOI: 10.1016/J.Jasms.2004.10.008 |
0.308 |
|
| 2005 |
Yu ET, Zhang Q, Fabris D. Untying the FIV frameshifting pseudoknot structure by MS3D. Journal of Molecular Biology. 345: 69-80. PMID 15567411 DOI: 10.1016/J.Jmb.2004.10.014 |
0.602 |
|
| 2005 |
Fabris D. Mass spectrometric approaches for the investigation of dynamic processes in condensed phase. Mass Spectrometry Reviews. 24: 30-54. PMID 15389863 DOI: 10.1002/Mas.20007 |
0.352 |
|
| 2004 |
Richter SN, Menegazzo I, Fabris D, Palumbo M. Concerted bis-alkylating reactivity of clerocidin towards unpaired cytosine residues in DNA. Nucleic Acids Research. 32: 5658-67. PMID 15494453 DOI: 10.1093/Nar/Gkh898 |
0.303 |
|
| 2004 |
Yu E, Fabris D. Toward multiplexing the application of solvent accessibility probes for the investigation of RNA three-dimensional structures by electrospray ionization-Fourier transform mass spectrometry. Analytical Biochemistry. 334: 356-66. PMID 15494143 DOI: 10.1016/J.Ab.2004.07.034 |
0.436 |
|
| 2004 |
Kellersberger KA, Tan PV, Laiko VV, Doroshenko VM, Fabris D. Atmospheric pressure MALDI-fourier transform mass spectrometry. Analytical Chemistry. 76: 3930-4. PMID 15253626 DOI: 10.1021/Ac0498415 |
0.4 |
|
| 2004 |
Kellersberger KA, Yu E, Kruppa GH, Young MM, Fabris D. Top-down characterization of nucleic acids modified by structural probes using high-resolution tandem mass spectrometry and automated data interpretation. Analytical Chemistry. 76: 2438-45. PMID 15117181 DOI: 10.1021/Ac0355045 |
0.485 |
|
| 2004 |
Richter S, Fabris D, Binaschi M, Gatto B, Capranico G, Palumbo M. Effects of common buffer systems on drug activity: the case of clerocidin. Chemical Research in Toxicology. 17: 492-501. PMID 15089091 DOI: 10.1021/Tx034210B |
0.326 |
|
| 2003 |
Gelhaus SL, LaCourse WR, Hagan NA, Amarasinghe GK, Fabris D. Rapid purification of RNA secondary structures. Nucleic Acids Research. 31: e135. PMID 14576335 DOI: 10.1093/Nar/Gng136 |
0.419 |
|
| 2003 |
Hagan N, Fabris D. Direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between nucleocapsid protein and RNA stem-loop hairpins of the HIV-1 Psi-recognition element. Biochemistry. 42: 10736-45. PMID 12962498 DOI: 10.1021/Bi0348922 |
0.381 |
|
| 2003 |
Yu E, Fabris D. Direct probing of RNA structures and RNA-protein interactions in the HIV-1 packaging signal by chemical modification and electrospray ionization fourier transform mass spectrometry. Journal of Molecular Biology. 330: 211-23. PMID 12823962 DOI: 10.1016/S0022-2836(03)00589-8 |
0.434 |
|
| 2002 |
Zhang Q, Ding Z, Creighton DJ, Ganem B, Fabris D. Alkylation of nucleic acids by the antitumor agent COMC. Organic Letters. 4: 1459-62. PMID 11975603 DOI: 10.1021/Ol025612Y |
0.504 |
|
| 2002 |
Cai M, Shi X, Sidorov V, Fabris D, Lam YF, Davis JT. Cation-directed self-assembly of lipophilic nucleosides: The cation's central role in the structure and dynamics of a hydrogen-bonded assembly Tetrahedron. 58: 661-671. DOI: 10.1016/S0040-4020(01)01101-2 |
0.302 |
|
| 2000 |
Fabris D. Steady-State Kinetics of Ricin A-Chain Reaction with the Sarcin−Ricin Loop and with HIV-1 Ψ-RNA Hairpins Evaluated by Direct Infusion Electrospray Ionization Mass Spectrometry Journal of the American Chemical Society. 122: 8779-8780. DOI: 10.1021/Ja0019676 |
0.334 |
|
| 1999 |
Fabris D, Hathout Y, Fenselau C. Investigation of Zinc Chelation in Zinc-Finger Arrays by Electrospray Mass Spectrometry. Inorganic Chemistry. 38: 1322-1325. PMID 11670920 DOI: 10.1021/Ic9809963 |
0.352 |
|
| 1998 |
Zaia J, Fabris D, Wei D, Karpel RL, Fenselau C. Monitoring metal ion flux in reactions of metallothionein and drug- modified metallothionein by electrospray mass spectrometry Protein Science. 7: 2398-2404. PMID 9828006 DOI: 10.1002/Pro.5560071117 |
0.36 |
|
| 1998 |
HE T, FABRIS D, FENSELAU C. Identification of Thymosin Proteins in Human Bladder Tumor Cells by Mass Spectrometry and Data Base Searching. Journal of the Mass Spectrometry Society of Japan. 46: 97-102. DOI: 10.5702/Massspec.46.97 |
0.318 |
|
| 1996 |
Hathout Y, Ellis T, Fabris D, Fenselau C. Cross-linking of human placenta π class glutathione S-transferase dimer by chlorambucil Chemical Research in Toxicology. 9: 1044-1049. PMID 8870994 DOI: 10.1021/Tx950193H |
0.357 |
|
| 1996 |
Zaia J, Jiang L, Han MS, Tabb JR, Wu Z, Fabris D, Fenselau C. A binding site for chlorambucil on metallothionein Biochemistry. 35: 2830-2835. PMID 8608118 DOI: 10.1021/Bi952243N |
0.368 |
|
| 1996 |
Fabris D, Zaia J, Hathout Y, Fenselau C. Retention of thiol protons in two classes of protein zinc ion coordination centers Journal of the American Chemical Society. 118: 12242-12243. DOI: 10.1021/Ja962863R |
0.323 |
|
| 1995 |
Fabris D, Vestling MM, Cordero MM, Doroshenko VM, Cotter RJ, Fenselau C. Sequencing electroblotted proteins by tandem mass spectrometry Rapid Communications in Mass Spectrometry. 9: 1051-1055. PMID 7548960 DOI: 10.1002/Rcm.1290091116 |
0.398 |
|
| 1995 |
Kaltashov IA, Fabris D, Fenselau CC. Assessment of gas phase basicities of protonated peptides by the kinetic method Journal of Physical Chemistry. 99: 10046-10051. DOI: 10.1021/J100024A055 |
0.301 |
|
| 1995 |
Fabris D, Wu Z, Fenselau CC. Massive cluster impact ionization on a four sector tandem mass spectrometer Journal of Mass Spectrometry. 30: 140-143. DOI: 10.1002/Jms.1190300121 |
0.388 |
|
| 1994 |
Fabris D, Kelly M, Wu Z, Fenselau C. Collision energy effects on the collision-induced dissociation of multiply charged melittin Rapid Communications in Mass Spectrometry : Rcm. 8: 791-795. PMID 7949340 DOI: 10.1002/Rcm.1290080926 |
0.31 |
|
| 1993 |
Fabris D, Kelly M, Murphy C, Wu Z, Fenselau C. High-energy collision-induced dissociation of multiply charged polypeptides produced by electrospray Journal of the American Society For Mass Spectrometry. 4: 652-661. DOI: 10.1016/1044-0305(93)85030-2 |
0.394 |
|
| 1991 |
Fabris D, Traldi P, Benassi CA, Pastore S, Bettero A, Rossato P. Mass spectrometric approaches in the characterization of the decomposition products of Dowicil 200® Biological Mass Spectrometry. 20: 361-366. DOI: 10.1002/Bms.1200200606 |
0.346 |
|
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