| Year |
Citation |
Score |
| 2024 |
Stiller J, Feng S, Chowdhury AA, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, ... ... Nakhleh L, et al. Complexity of avian evolution revealed by family-level genomes. Nature. PMID 38560995 DOI: 10.1038/s41586-024-07323-1 |
0.703 |
|
| 2023 |
Yan Z, Ogilvie HA, Nakhleh L. "Correcting" Gene Trees to be More Like Species Trees Frequently Increases Topological Error. Genome Biology and Evolution. 15. PMID 37243541 DOI: 10.1093/gbe/evad094 |
0.308 |
|
| 2022 |
Yin Y, Ogilvie HA, Nakhleh L. Annotation-free delineation of prokaryotic homology groups. Plos Computational Biology. 18: e1010216. PMID 35675326 DOI: 10.1371/journal.pcbi.1010216 |
0.317 |
|
| 2021 |
Yan Z, Cao Z, Liu Y, Ogilvie HA, Nakhleh L. Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes. Systematic Biology. PMID 34605924 DOI: 10.1093/sysbio/syab081 |
0.414 |
|
| 2021 |
Liu X, Ogilvie HA, Nakhleh L. Variational inference using approximate likelihood under the coalescent with recombination. Genome Research. PMID 34426513 DOI: 10.1101/gr.273631.120 |
0.346 |
|
| 2021 |
Yan Z, Smith ML, Du P, Hahn MW, Nakhleh L. Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs. Systematic Biology. PMID 34245291 DOI: 10.1093/sysbio/syab056 |
0.376 |
|
| 2020 |
Mallory XF, Edrisi M, Navin N, Nakhleh L. Methods for copy number aberration detection from single-cell DNA-sequencing data. Genome Biology. 21: 208. PMID 32807205 DOI: 10.1186/S13059-020-02119-8 |
0.368 |
|
| 2020 |
Mallory XF, Edrisi M, Navin N, Nakhleh L. Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data. Plos Computational Biology. 16: e1008012. PMID 32658894 DOI: 10.1371/Journal.Pcbi.1008012 |
0.406 |
|
| 2020 |
Tidwell H, Nakhleh L. Integrated likelihood for phylogenomics under a no-common-mechanism model. Bmc Genomics. 21: 219. PMID 32299348 DOI: 10.1186/S12864-020-6608-Y |
0.416 |
|
| 2020 |
Wang Y, Ogilvie HA, Nakhleh L. Practical Speedup of Bayesian Inference of Species Phylogenies by Restricting the Space of Gene Trees. Molecular Biology and Evolution. PMID 32077947 DOI: 10.1093/Molbev/Msaa045 |
0.461 |
|
| 2019 |
Zafar H, Navin N, Chen K, Nakhleh L. SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data. Genome Research. PMID 31628257 DOI: 10.1101/Gr.243121.118 |
0.397 |
|
| 2019 |
Zhu J, Liu X, Ogilvie HA, Nakhleh LK. A divide-and-conquer method for scalable phylogenetic network inference from multilocus data. Bioinformatics (Oxford, England). 35: i370-i378. PMID 31510688 DOI: 10.1093/bioinformatics/btz359 |
0.387 |
|
| 2019 |
Zafar H, Tzen A, Navin N, Chen K, Nakhleh L. Comments on the model parameters in "SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models". Genome Biology. 20: 95. PMID 31096998 DOI: 10.1186/S13059-019-1692-5 |
0.307 |
|
| 2019 |
Bravo GA, Antonelli A, Bacon CD, Bartoszek K, Blom MPK, Huynh S, Jones G, Knowles LL, Lamichhaney S, Marcussen T, Morlon H, Nakhleh LK, Oxelman B, Pfeil B, Schliep A, et al. Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. Peerj. 7: e6399. PMID 30783571 DOI: 10.7717/Peerj.6399 |
0.328 |
|
| 2018 |
Wang Y, Nakhleh L. Towards an accurate and efficient heuristic for species/gene tree co-estimation. Bioinformatics (Oxford, England). 34: i697-i705. PMID 30423064 DOI: 10.1093/Bioinformatics/Bty599 |
0.446 |
|
| 2018 |
Zhu J, Nakhleh L. Inference of species phylogenies from bi-allelic markers using pseudo-likelihood. Bioinformatics (Oxford, England). 34: i376-i385. PMID 29950004 DOI: 10.1093/bioinformatics/bty295 |
0.322 |
|
| 2018 |
Wen D, Yu Y, Zhu J, Nakhleh L. Inferring Phylogenetic Networks Using PhyloNet. Systematic Biology. PMID 29514307 DOI: 10.1093/Sysbio/Syy015 |
0.455 |
|
| 2018 |
Zhu J, Wen D, Yu Y, Meudt HM, Nakhleh L. Bayesian inference of phylogenetic networks from bi-allelic genetic markers. Plos Computational Biology. 14: e1005932. PMID 29320496 DOI: 10.1371/Journal.Pcbi.1005932 |
0.51 |
|
| 2018 |
Zafar H, Navin N, Nakhleh L, Chen K. Computational approaches for inferring tumor evolution from single-cell genomic data Current Opinion in Systems Biology. 7: 16-25. DOI: 10.1016/J.Coisb.2017.11.008 |
0.342 |
|
| 2017 |
Elworth RAL, Nakhleh L. Inferring Local Genealogies on Closely Related Genomes. Comparative Genomics : Recomb ... International Workshop, Rcg ... ; Revised Selected Papers. Rcg. 10562: 213-231. PMID 31602436 DOI: 10.1007/978-3-319-67979-2_12 |
0.339 |
|
| 2017 |
Wen D, Nakhleh L. Co-estimating Reticulate Phylogenies and Gene Trees from Multi-locus Sequence Data. Systematic Biology. PMID 29088409 DOI: 10.1093/Sysbio/Syx085 |
0.484 |
|
| 2017 |
Zafar H, Tzen A, Navin N, Chen K, Nakhleh L. SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models. Genome Biology. 18: 178. PMID 28927434 DOI: 10.1186/S13059-017-1311-2 |
0.342 |
|
| 2017 |
Wen D, Yu Y, Nakhleh L. Correction: Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent. Plos Genetics. 13: e1006598. PMID 28178269 DOI: 10.1371/Journal.Pgen.1006598 |
0.306 |
|
| 2017 |
Fan X, Chaisson M, Nakhleh L, Chen K. HySA: A Hybrid Structural variant Assembly approach using next generation and single-molecule sequencing technologies. Genome Research. PMID 28104618 DOI: 10.1101/Gr.214767.116 |
0.363 |
|
| 2016 |
Zhu J, Yu Y, Nakhleh L. In the light of deep coalescence: revisiting trees within networks. Bmc Bioinformatics. 17: 415. PMID 28185572 DOI: 10.1186/S12859-016-1269-1 |
0.409 |
|
| 2016 |
Yu Y, Jermaine C, Nakhleh L. Exploring phylogenetic hypotheses via Gibbs sampling on evolutionary networks. Bmc Genomics. 17: 784. PMID 28185563 DOI: 10.1186/S12864-016-3099-Y |
0.405 |
|
| 2016 |
Wen D, Yu Y, Nakhleh L. Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent. Plos Genetics. 12: e1006006. PMID 27144273 DOI: 10.1371/Journal.Pgen.1006006 |
0.501 |
|
| 2016 |
Zafar H, Wang Y, Nakhleh L, Navin N, Chen K. Monovar: single-nucleotide variant detection in single cells. Nature Methods. PMID 27088313 DOI: 10.1038/Nmeth.3835 |
0.306 |
|
| 2016 |
Wen D, Yu Y, Hahn MW, Nakhleh L. Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis. Molecular Ecology. PMID 26808290 DOI: 10.1111/Mec.13544 |
0.489 |
|
| 2015 |
Hahn MW, Nakhleh L. Irrational exuberance for resolved species trees. Evolution; International Journal of Organic Evolution. PMID 26639662 DOI: 10.1111/Evo.12832 |
0.406 |
|
| 2015 |
Yu Y, Nakhleh L. A maximum pseudo-likelihood approach for phylogenetic networks. Bmc Genomics. 16: S10. PMID 26450642 DOI: 10.1186/1471-2164-16-S10-S10 |
0.401 |
|
| 2015 |
Liu KJ, Steinberg E, Yozzo A, Song Y, Kohn MH, Nakhleh L. Interspecific introgressive origin of genomic diversity in the house mouse. Proceedings of the National Academy of Sciences of the United States of America. 112: 196-201. PMID 25512534 DOI: 10.1073/Pnas.1406298111 |
0.343 |
|
| 2015 |
Ang SO, Dong J, Nakhleh L, Cooper LJ. 226. Next-Generation Sleeping Beauty Integration Profiles of T-Cell Adoptive Immunotherapy Molecular Therapy. 23: S89. DOI: 10.1016/S1525-0016(16)33831-X |
0.343 |
|
| 2015 |
Yu Y, Nakhleh L. A distance-based method for inferring phylogenetic networks in the presence of incomplete lineage sorting Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9096: 378-389. DOI: 10.1007/978-3-319-19048-8_32 |
0.42 |
|
| 2014 |
Yu Y, Dong J, Liu KJ, Nakhleh L. Maximum likelihood inference of reticulate evolutionary histories. Proceedings of the National Academy of Sciences of the United States of America. 111: 16448-53. PMID 25368173 DOI: 10.1073/Pnas.1407950111 |
0.501 |
|
| 2014 |
Fan X, Zhou W, Chong Z, Nakhleh L, Chen K. Towards accurate characterization of clonal heterogeneity based on structural variation. Bmc Bioinformatics. 15: 299. PMID 25201439 DOI: 10.1186/1471-2105-15-299 |
0.316 |
|
| 2014 |
Liu KJ, Dai J, Truong K, Song Y, Kohn MH, Nakhleh L. An HMM-based comparative genomic framework for detecting introgression in eukaryotes. Plos Computational Biology. 10: e1003649. PMID 24922281 DOI: 10.1371/Journal.Pcbi.1003649 |
0.393 |
|
| 2013 |
Yu Y, Ristic N, Nakhleh L. Fast algorithms and heuristics for phylogenomics under ILS and hybridization. Bmc Bioinformatics. 14: S6. PMID 24564257 DOI: 10.1186/1471-2105-14-S15-S6 |
0.319 |
|
| 2013 |
Berestovsky N, Zhou W, Nagrath D, Nakhleh L. Modeling integrated cellular machinery using hybrid Petri-Boolean networks. Plos Computational Biology. 9: e1003306. PMID 24244124 DOI: 10.1371/Journal.Pcbi.1003306 |
0.339 |
|
| 2013 |
Nakhleh L. Computational approaches to species phylogeny inference and gene tree reconciliation. Trends in Ecology & Evolution. 28: 719-28. PMID 24094331 DOI: 10.1016/J.Tree.2013.09.004 |
0.39 |
|
| 2013 |
Zhu Y, Lin Z, Nakhleh L. Evolution after whole-genome duplication: a network perspective. G3 (Bethesda, Md.). 3: 2049-57. PMID 24048644 DOI: 10.1534/G3.113.008458 |
0.419 |
|
| 2013 |
Berestovsky N, Nakhleh L. An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data. Plos One. 8: e66031. PMID 23805196 DOI: 10.1371/Journal.Pone.0066031 |
0.401 |
|
| 2013 |
Bapteste E, van Iersel L, Janke A, Kelchner S, Kelk S, McInerney JO, Morrison DA, Nakhleh L, Steel M, Stougie L, Whitfield J. Networks: Expanding evolutionary thinking Trends in Genetics. 29: 439-441. PMID 23764187 DOI: 10.1016/J.Tig.2013.05.007 |
0.417 |
|
| 2013 |
Yu Y, Barnett RM, Nakhleh L. Parsimonious inference of hybridization in the presence of incomplete lineage sorting. Systematic Biology. 62: 738-51. PMID 23736104 DOI: 10.1093/Sysbio/Syt037 |
0.44 |
|
| 2013 |
Ruths T, Nakhleh L. Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topology. Proceedings of the National Academy of Sciences of the United States of America. 110: 7754-9. PMID 23610404 DOI: 10.1073/Pnas.1217630110 |
0.381 |
|
| 2013 |
Barbancon F, Evans SN, Nakhleh L, Ringe D, Warnow T. An experimental study comparing linguistic phylogenetic reconstruction methods Diachronica. 30: 143-170. DOI: 10.1075/Dia.30.2.01Bar |
0.627 |
|
| 2013 |
Nakhleh LK, Rosenberg NA, Warnow T. Phylogenomics and population genomics: Moddels, algorithms, and analytical tools 18th Pacific Symposium On Biocomputing, Psb 2013. |
0.5 |
|
| 2012 |
Park HJ, Nakhleh L. Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria. Bmc Bioinformatics. 13: S12. PMID 23281614 DOI: 10.1186/1471-2105-13-S19-S12 |
0.307 |
|
| 2012 |
Zhu Y, Du P, Nakhleh L. Gene duplicability-connectivity-complexity across organisms and a neutral evolutionary explanation. Plos One. 7: e44491. PMID 22984517 DOI: 10.1371/Journal.Pone.0044491 |
0.383 |
|
| 2012 |
Ruths T, Nakhleh L. ncDNA and drift drive binding site accumulation. Bmc Evolutionary Biology. 12: 159. PMID 22935101 DOI: 10.1186/1471-2148-12-159 |
0.315 |
|
| 2012 |
Yu Y, Degnan JH, Nakhleh L. The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection. Plos Genetics. 8: e1002660. PMID 22536161 DOI: 10.1371/Journal.Pgen.1002660 |
0.492 |
|
| 2012 |
Takuno S, Kado T, Sugino RP, Nakhleh L, Innan H. Population genomics in bacteria: a case study of Staphylococcus aureus. Molecular Biology and Evolution. 29: 797-809. PMID 22009061 DOI: 10.1093/Molbev/Msr249 |
0.327 |
|
| 2012 |
Zhu Y, Nakhleh L. Reconstructing the evolution of molecular interaction networks under the DMC and link dynamics models Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7534: 57-68. DOI: 10.1007/978-3-642-33122-0_5 |
0.314 |
|
| 2012 |
Park HJ, Nakhleh L. MURPAR: A fast heuristic for inferring parsimonious phylogenetic networks from multiple gene trees Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7292: 213-224. DOI: 10.1007/978-3-642-30191-9_20 |
0.41 |
|
| 2011 |
Yu Y, Warnow T, Nakhleh L. Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1543-59. PMID 22035329 DOI: 10.1089/Cmb.2011.0174 |
0.61 |
|
| 2011 |
Yu Y, Than C, Degnan JH, Nakhleh L. Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Systematic Biology. 60: 138-49. PMID 21248369 DOI: 10.1093/Sysbio/Syq084 |
0.446 |
|
| 2010 |
Park HJ, Jin G, Nakhleh L. Bootstrap-based support of HGT inferred by maximum parsimony. Bmc Evolutionary Biology. 10: 131. PMID 20444286 DOI: 10.1186/1471-2148-10-131 |
0.409 |
|
| 2010 |
Nakhleh L. A metric on the space of reduced phylogenetic networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 218-22. PMID 20431142 DOI: 10.1109/Tcbb.2009.2 |
0.371 |
|
| 2009 |
Than C, Nakhleh L. Species tree inference by minimizing deep coalescences. Plos Computational Biology. 5: e1000501. PMID 19749978 DOI: 10.1371/Journal.Pcbi.1000501 |
0.395 |
|
| 2009 |
Jin G, Nakhleh L, Snir S, Tuller T. Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 495-505. PMID 19644176 DOI: 10.1109/Tcbb.2008.119 |
0.492 |
|
| 2009 |
Ruths T, Ruths D, Nakhleh L. GS2: an efficiently computable measure of GO-based similarity of gene sets. Bioinformatics (Oxford, England). 25: 1178-84. PMID 19289444 DOI: 10.1093/Bioinformatics/Btp128 |
0.352 |
|
| 2008 |
Ruths D, Nakhleh L, Ram PT. Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle. Bmc Systems Biology. 2: 76. PMID 18713463 DOI: 10.1186/1752-0509-2-76 |
0.34 |
|
| 2008 |
Than C, Ruths D, Nakhleh L. PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships. Bmc Bioinformatics. 9: 322. PMID 18662388 DOI: 10.1186/1471-2105-9-322 |
0.42 |
|
| 2008 |
Ruths D, Muller M, Tseng JT, Nakhleh L, Ram PT. The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks. Plos Computational Biology. 4: e1000005. PMID 18463702 DOI: 10.1371/Journal.Pcbi.1000005 |
0.393 |
|
| 2008 |
Kanj IA, Nakhleh L, Than C, Xia G. Seeing the trees and their branches in the network is hard Theoretical Computer Science. 401: 153-164. DOI: 10.1016/J.Tcs.2008.04.019 |
0.434 |
|
| 2008 |
Kanj IA, Nakhleh L, Xia G. The compatibility of binary characters on phylogenetic networks: Complexity and parameterized algorithms Algorithmica (New York). 51: 99-128. DOI: 10.1007/S00453-007-9046-1 |
0.381 |
|
| 2008 |
Than C, Jin G, Nakhleh L. Integrating sequence and topology for efficient and accurate detection of horizontal gene transfer Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 113-127. DOI: 10.1007/978-3-540-87989-3_9 |
0.371 |
|
| 2008 |
Than C, Nakhleh L. SPR-based tree reconciliation: Non-binary trees and multiple solutions Series On Advances in Bioinformatics and Computational Biology. 6: 251-260. |
0.303 |
|
| 2007 |
Than C, Ruths D, Innan H, Nakhleh L. Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 517-35. PMID 17572027 DOI: 10.1089/Cmb.2007.A010 |
0.441 |
|
| 2007 |
Jin G, Nakhleh L, Snir S, Tuller T. Efficient parsimony-based methods for phylogenetic network reconstruction. Bioinformatics (Oxford, England). 23: e123-8. PMID 17237079 DOI: 10.1093/Bioinformatics/Btl313 |
0.509 |
|
| 2007 |
Jin G, Nakhleh L, Snir S, Tuller T. Inferring phylogenetic networks by the maximum parsimony criterion: a case study. Molecular Biology and Evolution. 24: 324-37. PMID 17068107 DOI: 10.1093/Molbev/Msl163 |
0.482 |
|
| 2007 |
Jin G, Nakhleh L, Snir S, Tuller T. A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4463: 61-72. |
0.389 |
|
| 2006 |
Dotsenko Y, Coarfa C, Nakhleh L, Mellor-Crummey J, Roshan U. PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. International Journal of Bioinformatics Research and Applications. 2: 407-19. PMID 18048181 DOI: 10.1504/Ijbra.2006.011039 |
0.726 |
|
| 2006 |
Ruths DA, Nakhleh L, Iyengar MS, Reddy SA, Ram PT. Hypothesis generation in signaling networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1546-57. PMID 17147477 DOI: 10.1089/Cmb.2006.13.1546 |
0.36 |
|
| 2006 |
Jin G, Nakhleh L, Snir S, Tuller T. Maximum likelihood of phylogenetic networks. Bioinformatics (Oxford, England). 22: 2604-11. PMID 16928736 DOI: 10.1093/Bioinformatics/Btl452 |
0.398 |
|
| 2006 |
Than C, Ruths D, Innan H, Nakhleh L. Identifiability issues in phylogeny-based detection of horizontal gene transfer Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4205: 215-229. |
0.333 |
|
| 2006 |
Ruths D, Nakhleh L. Recomp: A parsimony-based method for detecting recombination Series On Advances in Bioinformatics and Computational Biology. 3: 59-68. |
0.406 |
|
| 2006 |
Ruths D, Nakhleh L. Techniques for assessing phylogenetic branch support: A performance study Series On Advances in Bioinformatics and Computational Biology. 3: 187-196. |
0.331 |
|
| 2005 |
Ruths D, Nakhleh L. Recombination and phylogeny: effects and detection. International Journal of Bioinformatics Research and Applications. 1: 202-12. PMID 18048130 DOI: 10.1504/Ijbra.2005.007578 |
0.482 |
|
| 2005 |
Nakhleh L, Jin G, Zhao F, Mellor-Crummey J. Reconstructing phylogenetic networks using maximum parsimony. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 93-102. PMID 16447967 DOI: 10.1109/CSB.2005.47 |
0.402 |
|
| 2005 |
Nakhleh L, Warnow T, Linder CR, St John K. Reconstructing reticulate evolution in species-theory and practice. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 796-811. PMID 16108717 DOI: 10.1089/Cmb.2005.12.796 |
0.664 |
|
| 2005 |
Nakhleh L, Ringe D, Warnow T. Perfect phylogenetic networks: A new methodology for reconstructing the evolutionary history of natural languages Language. 81: 382-420. DOI: 10.1353/Lan.2005.0078 |
0.6 |
|
| 2005 |
Nakhleh L, Warnow T, Ringe D, Evans SN. A comparison of phylogenetic reconstruction methods on an Indo-European dataset Transactions of the Philological Society. 103: 171-192. DOI: 10.1111/J.1467-968X.2005.00149.X |
0.6 |
|
| 2005 |
Coarfa C, Dotsenko Y, Mellor-Crummey J, Nakhleh L, Roshan U. PRec-I-DCM3: A parallel framework for fast and accurate large scale phylogeny reconstruction Proceedings of the International Conference On Parallel and Distributed Systems - Icpads. 2: 346-350. DOI: 10.1109/ICPADS.2005.240 |
0.313 |
|
| 2005 |
Nakhleh L, Wang LS. Phylogenetic networks: Properties and relationship to trees and clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3680: 82-99. DOI: 10.1007/11567752_6 |
0.451 |
|
| 2005 |
Du Z, Stamatakis A, Lin F, Roshan U, Nakhleh L. Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3726: 776-785. DOI: 10.1007/11557654_88 |
0.375 |
|
| 2005 |
Nakhleh L, Ruths D, Wang LS. RIATA-HGT: A fast and accurate heuristic for reconstructing horizontal gene transfer Lecture Notes in Computer Science. 3595: 84-93. |
0.365 |
|
| 2004 |
Moret BM, Nakhleh L, Warnow T, Linder CR, Tholse A, Padolina A, Sun J, Timme R. Phylogenetic networks: modeling, reconstructibility, and accuracy. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 1: 13-23. PMID 17048405 DOI: 10.1109/Tcbb.2004.10 |
0.629 |
|
| 2004 |
Nakhleh L, Warnow T, Linder CR. Reconstructing reticulate evolution in species - Theory and practice Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 337-346. |
0.503 |
|
| 2003 |
Nakhleh L, Sun J, Warnow T, Linder CR, Moret BM, Tholse A. Towards the development of computational tools for evaluating phylogenetic network reconstruction methods. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 315-26. PMID 12603038 |
0.606 |
|
| 2002 |
Nakhleh L, Moret BM, Roshan U, St John K, Sun J, Warnow T. The accuracy of fast phylogenetic methods for large datasets. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 211-22. PMID 11928477 |
0.767 |
|
| 2002 |
Nakhleh L, Roshan U, Vawter L, Warnow T. Estimating the deviation from a molecular clock Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2452: 287-299. |
0.559 |
|
| 2001 |
Nakhleh L, Roshan U, St John K, Sun J, Warnow T. Designing fast converging phylogenetic methods. Bioinformatics (Oxford, England). 17: S190-8. PMID 11473009 DOI: 10.1093/Bioinformatics/17.Suppl_1.S190 |
0.755 |
|
| 2001 |
Nakhleh L, Roshan U, St. John K, Sun J, Warnow T. The performance of phylogenetic methods on trees of bounded diameter Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2149: 214-226. DOI: 10.1007/3-540-44696-6_17 |
0.596 |
|
| Show low-probability matches. |