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Andrey A. Shabalin, Ph.D. - Publications

Affiliations: 
2010 Statistics University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Statistics, Bioinformatics Biology
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Guintivano J, Shabalin AA, Chan RF, Rubinow DR, Sullivan PF, Meltzer-Brody S, Aberg KA, van den Oord EJCG. Test-statistic inflation in methylome-wide association studies. Epigenetics. 1-4. PMID 32425094 DOI: 10.1080/15592294.2020.1758382  0.305
2019 Clark SL, Hattab MW, Chan RF, Shabalin AA, Han LKM, Zhao M, Smit JH, Jansen R, Milaneschi Y, Xie LY, van Grootheest G, Penninx BWJH, Aberg KA, van den Oord EJCG. A methylation study of long-term depression risk. Molecular Psychiatry. PMID 31501512 DOI: 10.1038/S41380-019-0516-Z  0.35
2019 Chan RF, Shabalin AA, Montano C, Hannon E, Hultman CM, Fallin MD, Feinberg AP, Mill J, van den Oord EJCG, Aberg KA. Independent Methylome-Wide Association Studies of Schizophrenia Detect Consistent Case-Control Differences. Schizophrenia Bulletin. PMID 31165892 DOI: 10.1093/Schbul/Sbz056  0.343
2019 Anderson J, Shabalin A, Shade J, Bakian A, Adkins D, Callor WB, Christensen E, DiBlasi E, Gray D, Hayward C, Porteous D, Edwards A, Li Q, Coon H, Docherty A. SA91A GENOME-WIDE ASSOCIATION STUDY OF COMPLETED SUICIDE IN UTAH European Neuropsychopharmacology. 29: S1238. DOI: 10.1016/J.Euroneuro.2018.08.313  0.301
2019 DiBlasi E, Li Q, Anderson J, Callor WB, Christensen E, Jerominski L, Sargent R, Gray D, Camp N, Shabalin A, Docherty A, Coon H. 66Analyses Of Disease-Associated And Likely Functional Variants From Psycharray Implicate Genes Involved In Risk For Completed Suicide European Neuropsychopharmacology. 29. DOI: 10.1016/J.Euroneuro.2018.08.073  0.33
2019 McClay J, Shabalin A. SEQUENCE MOTIF AND PROTEIN DOMAIN ENRICHMENT ANALYSIS OF PSYCHIATRIC GWAS FINDINGS European Neuropsychopharmacology. 29: S943. DOI: 10.1016/J.Euroneuro.2017.08.289  0.35
2019 Aberg K, Dean B, Shabalin A, Zhao M, Chan R, Hattab M, van Grootheest G, Han L, Aghajani M, Milaneschi Y, Jansen R, Xie L, Clark S, Penninx B, van den Oord E. METHYLOME-WIDE ASSOCIATION STUDIES FOR MAJOR DEPRESSIVE DISORDER IN BLOOD OVERLAP WITH METHYLATION RESULTS FROM BRAIN AND LARGE-SCALE GWAS European Neuropsychopharmacology. 29: S807-S808. DOI: 10.1016/J.Euroneuro.2017.08.048  0.362
2019 Clark S, Hattab M, Shabalin A, Han L, Chan R, Zhao M, Smit J, Jansen R, Milaneschi Y, Xie L, van Grootheest G, Penninx B, Aberg K, van den Oord E. PREDICTING THE FUTURE DISEASE STATUS OF DEPRESSED PATIENTS FROM DNA METHYLATION PATTERNS IN BLOOD European Neuropsychopharmacology. 29: S793-S794. DOI: 10.1016/J.Euroneuro.2017.08.025  0.308
2018 Coon H, Darlington TM, DiBlasi E, Callor WB, Ferris E, Fraser A, Yu Z, William N, Das SC, Crowell SE, Chen D, Anderson JS, Klein M, Jerominski L, Cannon D, ... Shabalin A, et al. Genome-wide significant regions in 43 Utah high-risk families implicate multiple genes involved in risk for completed suicide. Molecular Psychiatry. PMID 30353169 DOI: 10.1038/S41380-018-0282-3  0.329
2018 Aberg KA, Dean B, Shabalin AA, Chan RF, Han LKM, Zhao M, van Grootheest G, Xie LY, Milaneschi Y, Clark SL, Turecki G, Penninx BWJH, van den Oord EJCG. Methylome-wide association findings for major depressive disorder overlap in blood and brain and replicate in independent brain samples. Molecular Psychiatry. PMID 30242228 DOI: 10.1038/S41380-018-0247-6  0.33
2018 Aberg KA, Shabalin AA, Chan RF, Zhao M, Kumar G, van Grootheest G, Clark SL, Xie LY, Milaneschi Y, Penninx BWJH, van den Oord EJCG. Convergence of evidence from a methylome-wide CpG-SNP association study and GWAS of major depressive disorder. Translational Psychiatry. 8: 162. PMID 30135428 DOI: 10.1038/S41398-018-0205-8  0.381
2018 Xia H, Jahr FM, Kim NK, Xie L, Shabalin AA, Bryois J, Sweet DH, Kronfol MM, Palasuberniam P, McRae M, Riley BP, Sullivan PF, van den Oord EJ, McClay JL. Building a schizophrenia genetic network: Transcription Factor 4 regulates genes involved in neuronal development and schizophrenia risk. Human Molecular Genetics. PMID 29905862 DOI: 10.1093/Hmg/Ddy222  0.373
2018 Docherty AR, Fonseca-Pedrero E, Debbané M, Chan RCK, Linscott RJ, Jonas KG, Cicero DC, Green MJ, Simms LJ, Mason O, Watson D, Ettinger U, Waszczuk M, Rapp A, Grant P, ... ... Shabalin AA, et al. Enhancing Psychosis-Spectrum Nosology Through an International Data Sharing Initiative. Schizophrenia Bulletin. PMID 29788473 DOI: 10.1093/Schbul/Sby059  0.338
2018 Shabalin AA, Hattab MW, Clark SL, Chan RF, Kumar G, Aberg KA, van den Oord EJCG, Birol I. RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms. Bioinformatics (Oxford, England). PMID 29447401 DOI: 10.1093/Bioinformatics/Bty069  0.354
2018 Aberg KA, Chan RF, Xie L, Shabalin AA, van den Oord EJCG. Methyl-CpG-Binding Domain Sequencing: MBD-seq. Methods in Molecular Biology (Clifton, N.J.). 1708: 171-189. PMID 29224145 DOI: 10.1007/978-1-4939-7481-8_10  0.307
2017 Palowitch J, Shabalin A, Zhou YH, Nobel AB, Wright FA. Estimation of cis-eQTL effect sizes using a log of linear model. Biometrics. PMID 29073327 DOI: 10.1111/Biom.12810  0.634
2017 Li G, Shabalin AA, Rusyn I, Wright FA, Nobel AB. An empirical Bayes approach for multiple tissue eQTL analysis. Biostatistics (Oxford, England). PMID 29029013 DOI: 10.1093/Biostatistics/Kxx048  0.661
2017 Aberg KA, Chan RF, Shabalin AA, Zhao M, Turecki G, Heine Staunstrup N, Starnawska A, Mors O, Xie LY, van den Oord EJCG. A MBD-seq protocol for large-scale methylome-wide studies with (very) low amounts of DNA. Epigenetics. 0. PMID 28703682 DOI: 10.1080/15592294.2017.1335849  0.329
2017 Chan RF, Shabalin AA, Xie LY, Adkins DE, Zhao M, Turecki G, Clark SL, Aberg KA, van den Oord EJ. Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome. Nucleic Acids Research. PMID 28334972 DOI: 10.1093/Nar/Gkx143  0.334
2017 Clark SL, Adkins DE, Kumar G, Aberg KA, Nerella S, Xie L, Collins AL, Crowley JJ, Quackenbush CR, Hilliard CE, Shabalin AA, Vrieze SI, Peterson RE, Copeland WE, Silberg JL, et al. Deep sequencing of 71 candidate genes to characterize variation associated with alcohol dependence. Alcoholism, Clinical and Experimental Research. PMID 28196272 DOI: 10.1111/Acer.13352  0.32
2017 Hattab MW, Shabalin AA, Clark SL, Zhao M, Kumar G, Chan RF, Xie LY, Jansen R, Han LK, Magnusson PK, van Grootheest G, Hultman CM, Penninx BW, Aberg KA, van den Oord EJ. Correcting for cell-type effects in DNA methylation studies: reference-based method outperforms latent variable approaches in empirical studies. Genome Biology. 18: 24. PMID 28137292 DOI: 10.1186/S13059-017-1148-8  0.324
2015 McClay JL, Shabalin AA, Dozmorov MG, Adkins DE, Kumar G, Nerella S, Clark SL, Bergen SE, Hultman CM, Magnusson PK, Sullivan PF, Aberg KA, van den Oord EJ. High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction. Genome Biology. 16: 291. PMID 26699738 DOI: 10.1186/S13059-015-0842-7  0.336
2015 Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, ... ... Shabalin AA, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/Nature15394  0.386
2015 Clark SL, McClay JL, Adkins DE, Aberg KA, Kumar G, Nerella S, Xie L, Collins AL, Crowley JJ, Quakenbush CR, Hillard CE, Gao G, Shabalin AA, Peterson RE, Copeland WE, et al. Deep Sequencing of Three Loci Implicated in Large-Scale Genome-Wide Association Study Smoking Meta-Analyses. Nicotine & Tobacco Research : Official Journal of the Society For Research On Nicotine and Tobacco. PMID 26283763 DOI: 10.1093/Ntr/Ntv166  0.335
2015 Shabalin AA, Aberg KA, van den Oord EJ. Candidate gene methylation studies are at high risk of erroneous conclusions. Epigenomics. 7: 13-5. PMID 25687462 DOI: 10.2217/Epi.14.70  0.338
2015 Kumar G, Clark SL, McClay JL, Shabalin AA, Adkins DE, Xie L, Chan R, Nerella S, Kim Y, Sullivan PF, Hultman CM, Magnusson PK, Aberg KA, van den Oord EJ. Refinement of schizophrenia GWAS loci using methylome-wide association data. Human Genetics. 134: 77-87. PMID 25284466 DOI: 10.1007/S00439-014-1494-5  0.392
2015 Ardlie KG, DeLuca DS, Segrè AV, Sullivan TJ, Young TR, Gelfand ET, Trowbridge CA, Maller JB, Tukiainen T, Lek M, Ward LD, Kheradpour P, Iriarte B, Meng Y, Palmer CD, ... ... Shabalin AA, et al. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans Science. 348: 648-660. DOI: 10.1126/science.1262110  0.62
2014 Gatti DM, Svenson KL, Shabalin A, Wu LY, Valdar W, Simecek P, Goodwin N, Cheng R, Pomp D, Palmer A, Chesler EJ, Broman KW, Churchill GA. Quantitative trait locus mapping methods for diversity outbred mice. G3 (Bethesda, Md.). 4: 1623-33. PMID 25237114 DOI: 10.1534/G3.114.013748  0.326
2014 Wright FA, Sullivan PF, Brooks AI, Zou F, Sun W, Xia K, Madar V, Jansen R, Chung W, Zhou YH, Abdellaoui A, Batista S, Butler C, Chen G, Chen TH, ... ... Shabalin A, et al. Heritability and genomics of gene expression in peripheral blood. Nature Genetics. 46: 430-7. PMID 24728292 DOI: 10.1038/Ng.2951  0.426
2013 Ramasamy A, Trabzuni D, Gibbs JR, Dillman A, Hernandez DG, Arepalli S, Walker R, Smith C, Ilori GP, Shabalin AA, Li Y, Singleton AB, Cookson MR, Hardy J, et al. Resolving the polymorphism-in-probe problem is critical for correct interpretation of expression QTL studies. Nucleic Acids Research. 41: e88. PMID 23435227 DOI: 10.1093/Nar/Gkt069  0.364
2013 Shabalin AA, Nobel AB. Reconstruction of a low-rank matrix in the presence of Gaussian noise Journal of Multivariate Analysis. 118: 67-76. DOI: 10.1016/J.Jmva.2013.03.005  0.574
2012 Shabalin AA. Matrix eQTL: ultra fast eQTL analysis via large matrix operations. Bioinformatics (Oxford, England). 28: 1353-8. PMID 22492648 DOI: 10.1093/Bioinformatics/Bts163  0.387
2012 Wright FA, Shabalin AA, Rusyn I. Computational tools for discovery and interpretation of expression quantitative trait loci. Pharmacogenomics. 13: 343-52. PMID 22304583 DOI: 10.2217/Pgs.11.185  0.37
2012 Xia K, Shabalin AA, Huang S, Madar V, Zhou YH, Wang W, Zou F, Sun W, Sullivan PF, Wright FA. seeQTL: a searchable database for human eQTLs. Bioinformatics (Oxford, England). 28: 451-2. PMID 22171328 DOI: 10.1093/Bioinformatics/Btr678  0.325
2012 Weigman VJ, Chao HH, Shabalin AA, He X, Parker JS, Nordgard SH, Grushko T, Huo D, Nwachukwu C, Nobel A, Kristensen VN, Børresen-Dale AL, Olopade OI, Perou CM. Basal-like Breast cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival. Breast Cancer Research and Treatment. 133: 865-80. PMID 22048815 DOI: 10.1007/S10549-011-1846-Y  0.624
2010 Gatti DM, Zhao N, Chesler EJ, Bradford BU, Shabalin AA, Yordanova R, Lu L, Rusyn I. Sex-specific gene expression in the BXD mouse liver. Physiological Genomics. 42: 456-68. PMID 20551147 DOI: 10.1152/Physiolgenomics.00110.2009  0.383
2009 Lickwar CR, Rao B, Shabalin AA, Nobel AB, Strahl BD, Lieb JD. The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency. Plos One. 4: e4886. PMID 19295910 DOI: 10.1371/Journal.Pone.0004886  0.616
2009 Gatti DM, Shabalin AA, Lam TC, Wright FA, Rusyn I, Nobel AB. FastMap: fast eQTL mapping in homozygous populations. Bioinformatics (Oxford, England). 25: 482-9. PMID 19091771 DOI: 10.1093/Bioinformatics/Btn648  0.628
2009 Shabalin AA, Weigman VJ, Perou CM, Nobel AB. Finding large average submatrices in high dimensional data Annals of Applied Statistics. 3: 985-1012. DOI: 10.1214/09-Aoas239  0.629
2008 Shabalin AA, Tjelmeland H, Fan C, Perou CM, Nobel AB. Merging two gene-expression studies via cross-platform normalization. Bioinformatics (Oxford, England). 24: 1154-60. PMID 18325927 DOI: 10.1093/Bioinformatics/Btn083  0.635
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