☰

Feixia Chu, Ph.D. - Publications

Affiliations: 
2004 University of California, San Francisco, San Francisco, CA 
Area:
Pharmaceutical Chemistry, Biochemistry, Analytical Chemistry
Tree Info Similar researchers PubMed Report error

28/49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Chiosis G, McNutt S, Roychowdhury T, Pasala C, Nguyen H, Thorton D, Sharma S, Boticelli L, Digwal C, Joshi S, Yang N, Panchal P, Chakrabarty S, Bay S, Markov V, ... ... Chu F, et al. Phosphorylation-Driven Epichaperome Assembly: A Critical Regulator of Cellular Adaptability and Proliferation. Research Square. PMID 38645031 DOI: 10.21203/rs.3.rs-4114038/v1  0.46
2020 Gupta R, Liu Y, Wang H, Nordyke CT, Puterbaugh RZ, Cui W, Varga K, Chu F, Ke H, Vashisth H, Cote RH. Structural Analysis of the Regulatory GAF Domains of cGMP Phosphodiesterase Elucidates the Allosteric Communication Pathway. Journal of Molecular Biology. PMID 32898583 DOI: 10.1016/J.Jmb.2020.08.026  0.343
2019 Irwin MJ, Gupta R, Gao XZ, Cahill KB, Chu F, Cote RH. The molecular architecture of photoreceptor phosphodiesterase 6 (PDE6) with activated G protein elucidates the mechanism of visual excitation. The Journal of Biological Chemistry. PMID 31690623 DOI: 10.1074/Jbc.Ra119.011002  0.346
2019 Chu F, Hogan D, Gupta R, Gao XZ, Nguyen HT, Cote RH. Allosteric Regulation of Rod Photoreceptor Phosphodiesterase 6 (PDE6) Elucidated by Chemical Cross-Linking and Quantitative Mass Spectrometry. Journal of Molecular Biology. PMID 31394113 DOI: 10.1016/J.Jmb.2019.07.035  0.348
2018 Chu F, Thornton DT, Nguyen HT. Chemical cross-linking in the structural analysis of protein assemblies. Methods (San Diego, Calif.). PMID 29857191 DOI: 10.1016/J.Ymeth.2018.05.023  0.386
2017 Karagöz GE, Acosta-Alvear D, Nguyen HT, Lee CP, Chu F, Walter P. An unfolded protein-induced conformational switch activates mammalian IRE1. Elife. 6. PMID 28971800 DOI: 10.7554/Elife.30700  0.339
2017 Ee LS, McCannell KN, Tang Y, Fernandes N, Hardy WR, Green MR, Chu F, Fazzio TG. An Embryonic Stem Cell-Specific NuRD Complex Functions through Interaction with WDR5. Stem Cell Reports. PMID 28528697 DOI: 10.1016/J.Stemcr.2017.04.020  0.35
2016 Rodina A, Wang T, Yan P, Gomes ED, Dunphy MP, Pillarsetty N, Koren J, Gerecitano JF, Taldone T, Zong H, Caldas-Lopes E, Alpaugh M, Corben A, Riolo M, Beattie B, ... ... Chu F, et al. The epichaperome is an integrated chaperome network that facilitates tumour survival. Nature. PMID 27706135 DOI: 10.1038/Nature19807  0.318
2014 Zeng-Elmore X, Gao XZ, Pellarin R, Schneidman-Duhovny D, Zhang XJ, Kozacka KA, Tang Y, Sali A, Chalkley RJ, Cote RH, Chu F. Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling. Journal of Molecular Biology. 426: 3713-28. PMID 25149264 DOI: 10.1016/J.Jmb.2014.07.033  0.354
2014 Street TO, Zeng X, Pellarin R, Bonomi M, Sali A, Kelly MJ, Chu F, Agard DA. Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone. Journal of Molecular Biology. 426: 2393-404. PMID 24726919 DOI: 10.1016/J.Jmb.2014.04.001  0.337
2013 Chen PB, Hung JH, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG. Hdac6 regulates Tip60-p400 function in stem cells. Elife. 2: e01557. PMID 24302573 DOI: 10.7554/Elife.01557  0.31
2013 Wu B, Peisley A, Richards C, Yao H, Zeng X, Lin C, Chu F, Walz T, Hur S. Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5. Cell. 152: 276-89. PMID 23273991 DOI: 10.1016/J.Cell.2012.11.048  0.304
2011 Park MS, Chu F, Xie J, Wang Y, Bhattacharya P, Chan WK. Identification of cyclophilin-40-interacting proteins reveals potential cellular function of cyclophilin-40. Analytical Biochemistry. 410: 257-65. PMID 21146485 DOI: 10.1016/J.Ab.2010.12.007  0.372
2011 Chu F, Ren X, Chasse A, Hickman T, Zhang L, Yuh J, Smith MT, Burlingame AL. Quantitative mass spectrometry reveals the epigenome as a target of arsenic. Chemico-Biological Interactions. 192: 113-7. PMID 21075096 DOI: 10.1016/J.Cbi.2010.11.003  0.49
2010 Chu F, Baker PR, Burlingame AL, Chalkley RJ. Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides. Molecular & Cellular Proteomics : McP. 9: 25-31. PMID 19809093 DOI: 10.1074/Mcp.M800555-Mcp200  0.495
2009 Jo WJ, Ren X, Chu F, Aleshin M, Wintz H, Burlingame A, Smith MT, Vulpe CD, Zhang L. Acetylated H4K16 by MYST1 protects UROtsa cells from arsenic toxicity and is decreased following chronic arsenic exposure. Toxicology and Applied Pharmacology. 241: 294-302. PMID 19732783 DOI: 10.1016/J.Taap.2009.08.027  0.446
2009 Worringer KA, Chu F, Panning B. The zinc finger protein Zn72D and DEAD box helicase Belle interact and control maleless mRNA and protein levels. Bmc Molecular Biology. 10: 33. PMID 19386123 DOI: 10.1186/1471-2199-10-33  0.336
2008 Li Z, Lee JH, Chu F, Burlingame AL, Günzl A, Wang CC. Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei. Plos One. 3: e2354. PMID 18545648 DOI: 10.1371/Journal.Pone.0002354  0.467
2008 Casati P, Campi M, Chu F, Suzuki N, Maltby D, Guan S, Burlingame AL, Walbot V. Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. The Plant Cell. 20: 827-42. PMID 18398050 DOI: 10.1105/Tpc.107.056457  0.464
2008 Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, ... ... Chu F, et al. Human Proteinpedia enables sharing of human protein data. Nature Biotechnology. 26: 164-7. PMID 18259167 DOI: 10.1038/Nbt0208-164  0.453
2007 Walther TC, Aguilar PS, Fröhlich F, Chu F, Moreira K, Burlingame AL, Walter P. Pkh-kinases control eisosome assembly and organization. The Embo Journal. 26: 4946-55. PMID 18034155 DOI: 10.1038/Sj.Emboj.7601933  0.445
2007 Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell. 128: 1003-12. PMID 17350582 DOI: 10.1016/j.cell.2006.12.041  0.412
2006 Chu F, Mahrus S, Craik CS, Burlingame AL. Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. Journal of the American Chemical Society. 128: 10362-3. PMID 16895390 DOI: 10.1021/Ja0614159  0.493
2006 Chu F, Maynard JC, Chiosis G, Nicchitta CV, Burlingame AL. Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94. Protein Science : a Publication of the Protein Society. 15: 1260-9. PMID 16731965 DOI: 10.1110/Ps.052065106  0.475
2006 Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 194-203. PMID 16210244 DOI: 10.1074/Mcp.M500285-Mcp200  0.495
2004 Chu F, Shan SO, Moustakas DT, Alber F, Egea PF, Stroud RM, Walter P, Burlingame AL. Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 101: 16454-9. PMID 15546976 DOI: 10.1073/Pnas.0407456101  0.511
1999 Wolfender JL, Chu F, Ball H, Wolfender F, Fainzilber M, Baldwin MA, Burlingame AL. Identification of tyrosine sulfation in Conus pennaceus conotoxins alpha-PnIA and alpha-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry. Journal of Mass Spectrometry : Jms. 34: 447-54. PMID 10226369 DOI: 10.1002/(Sici)1096-9888(199904)34:4<447::Aid-Jms801>3.0.Co;2-1  0.419
1999 Wolfender J, Chu F, Ball H, Wolfender F, Fainzilber M, Baldwin MA, Burlingame AL. Identification of tyrosine sulfation in Conus pennaceus conotoxins α-PnIA and α-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry Dedicated to the memory of Professor Dr Wilhelm J. Richter. Journal of Mass Spectrometry. 34: 447. DOI: 10.1002/(Sici)1096-9888(199904)34:4<447::Aid-Jms801>3.3.Co;2-T  0.399
Low-probability matches (unlikely to be authored by this person)
2007 Hostetter DR, Loeb CR, Chu F, Craik CS. Hip is a pro-survival substrate of granzyme B. The Journal of Biological Chemistry. 282: 27865-74. PMID 17620340 DOI: 10.1074/Jbc.M704312200  0.289
2019 Williams TL, Senft SL, Yeo J, Martín-Martínez FJ, Kuzirian AM, Martin CA, DiBona CW, Chen CT, Dinneen SR, Nguyen HT, Gomes CM, Rosenthal JJC, MacManes MD, Chu F, Buehler MJ, et al. Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. Nature Communications. 10: 1004. PMID 30824708 DOI: 10.1038/S41467-019-08891-X  0.288
2019 Zhou Y, Qiu L, Sterpka A, Wang H, Chu F, Chen X. Comparative Phosphoproteomic Profiling of Type III Adenylyl Cyclase Knockout and Control, Male, and Female Mice. Frontiers in Cellular Neuroscience. 13: 34. PMID 30814930 DOI: 10.3389/Fncel.2019.00034  0.288
2012 Hu H, Hu L, Yu Z, Chasse AE, Chu F, Li Z. An orphan kinesin in trypanosomes cooperates with a kinetoplastid-specific kinesin to maintain cell morphology by regulating subpellicular microtubules. Journal of Cell Science. 125: 4126-36. PMID 22623724 DOI: 10.1242/Jcs.106534  0.283
2017 Karagöz GE, Acosta-Alvear D, Nguyen HT, Lee CP, Chu F, Walter P. Author response: An unfolded protein-induced conformational switch activates mammalian IRE1 Elife. DOI: 10.7554/Elife.30700.034  0.279
2015 Baker E, Tang Y, Chu F, Tisa LS. Molecular responses of Frankia sp. strain QA3 to naphthalene. Canadian Journal of Microbiology. 61: 281-92. PMID 25742598 DOI: 10.1139/Cjm-2014-0786  0.275
2016 Williams TL, DiBona CW, Dinneen SR, Jones Labadie SF, Chu F, Deravi LF. Contributions of Phenoxazone-Based Pigments to the Structure and Function of Nanostructured Granules in Squid Chromatophores. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 27049640 DOI: 10.1021/Acs.Langmuir.6B00243  0.271
2014 Rehan M, Furnholm T, Finethy RH, Chu F, El-Fadly G, Tisa LS. Copper tolerance in Frankia sp. strain EuI1c involves surface binding and copper transport. Applied Microbiology and Biotechnology. 98: 8005-15. PMID 24903815 DOI: 10.1007/S00253-014-5849-6  0.249
2013 Chen PB, Hung J, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG. Author response: Hdac6 regulates Tip60-p400 function in stem cells Elife. DOI: 10.7554/Elife.01557.035  0.246
2023 Fleck K, McNutt S, Chu F, Jeffers V. An apicomplexan bromodomain protein, TgBDP1, associates with diverse epigenetic factors to regulate essential transcriptional processes in . Mbio. e0357322. PMID 37350586 DOI: 10.1128/mbio.03573-22  0.238
2017 Oshone R, Ngom M, Chu F, Mansour S, Sy MO, Champion A, Tisa LS. Genomic, transcriptomic, and proteomic approaches towards understanding the molecular mechanisms of salt tolerance in Frankia strains isolated from Casuarina trees. Bmc Genomics. 18: 633. PMID 28821232 DOI: 10.1186/S12864-017-4056-0  0.238
2002 Salvatore RN, Chu F, Nagle AS, Kapxhiu EA, Cross RM, Jung KW. Efficient Cs2CO3-promoted solution and solid phase synthesis of carbonates and carbamates in the presence of TBAI Tetrahedron. 58: 3329-3347. DOI: 10.1016/S0040-4020(02)00286-7  0.236
2012 Brickner DG, Ahmed S, Meldi L, Thompson A, Light W, Young M, Hickman TL, Chu F, Fabre E, Brickner JH. Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery. Developmental Cell. 22: 1234-46. PMID 22579222 DOI: 10.1016/J.Devcel.2012.03.012  0.225
1999 Dueno EE, Chu F, Kim SI, Kyung Woon Jung. Cesium promoted O-alkylation of alcohols for the efficient ether synthesis Tetrahedron Letters. 40: 1843-1846. DOI: 10.1016/S0040-4039(99)00083-0  0.22
1999 Kim SI, Chu F, Dueno EE, Jung KW. Alkyl Carbonates: Efficient Three Component Coupling of Aliphatic Alcohols, CO(2), and Alkyl Halides in the Presence of Cs(2)CO(3). The Journal of Organic Chemistry. 64: 4578-4579. PMID 11674524 DOI: 10.1021/Jo990520G  0.215
2021 Altincekic N, Korn SM, Qureshi NS, Dujardin M, Ninot-Pedrosa M, Abele R, Abi Saad MJ, Alfano C, Almeida FCL, Alshamleh I, de Amorim GC, Anderson TK, Anobom CD, Anorma C, Bains JK, ... ... Chu F, et al. Large-Scale Recombinant Production of the SARS-CoV-2 Proteome for High-Throughput and Structural Biology Applications. Frontiers in Molecular Biosciences. 8: 653148. PMID 34041264 DOI: 10.3389/fmolb.2021.653148  0.21
1999 Chu F, Dueno EE, Kyung Woon Jung. Cs 2CO 3 promoted O-alkylation of alcohols for the preparation of mixed alkyl carbonates Tetrahedron Letters. 40: 1847-1850. DOI: 10.1016/S0040-4039(99)00084-2  0.209
2014 Zeng-Elmore X, Tang Y, Gao X, Schneidman-Duhovny D, Cote RH, Zhang X, Chalkley RJ, Chu F, Kozacka KA, Sali A, Pellarin R. Modeling of the phosphodiesterase (PDE6) Journal of Molecular Biology. 426: 3713-3728. DOI: 10.5281/Zenodo.46599  0.186
2021 Wu T, Nance J, Chu F, Fazzio TG. Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression. Molecular & Cellular Proteomics : McP. 100142. PMID 34478875 DOI: 10.1016/j.mcpro.2021.100142  0.174
2020 Radosavljevic A, Silverwood T, Madore V, Charntikov S, Chu F. Global Examination of the Effects of Methamphetamine on Histone Post‐Translational Modifications in the Rat Striatum The Faseb Journal. 34: 1-1. DOI: 10.1096/fasebj.2020.34.s1.04911  0.118
2020 Silverwood T, Radosavljevic A, Charntikov S, Chu F. A Novel Data Analysis Pipeline for Bottoms‐Up Mass Spectrometry Proteomic Analysis of Primary Tissues The Faseb Journal. 34: 1-1. DOI: 10.1096/fasebj.2020.34.s1.04038  0.113
Hide low-probability matches.