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Neeraj J. Agrawal, Ph.D. - Publications

Affiliations: 
2009 University of Pennsylvania, Philadelphia, PA, United States 
Area:
Chemical Engineering, General Biophysics
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Courtois F, Agrawal NJ, Lauer TM, Trout BL. Rational design of therapeutic mAbs against aggregation through protein engineering and incorporation of glycosylation motifs applied to bevacizumab. Mabs. 0. PMID 26514585 DOI: 10.1080/19420862.2015.1112477  0.322
2015 Courtois F, Schneider CP, Agrawal NJ, Trout BL. Rational Design of Biobetters with Enhanced Stability. Journal of Pharmaceutical Sciences. PMID 26096711 DOI: 10.1002/Jps.24520  0.31
2014 Agrawal NJ, Helk B, Trout BL. A computational tool to predict the evolutionarily conserved protein-protein interaction hot-spot residues from the structure of the unbound protein. Febs Letters. 588: 326-33. PMID 24239538 DOI: 10.1016/J.Febslet.2013.11.004  0.351
2013 Liu Y, Agrawal NJ, Radhakrishnan R. A flexible-protein molecular docking study of the binding of ruthenium complex compounds to PIM1, GSK-3β, and CDK2/Cyclin A protein kinases. Journal of Molecular Modeling. 19: 371-82. PMID 22926267 DOI: 10.1007/S00894-012-1555-4  0.665
2012 Liu J, Tourdot R, Ramanan V, Agrawal NJ, Radhakrishanan R. Mesoscale simulations of curvature-inducing protein partitioning on lipid bilayer membranes in the presence of mean curvature fields. Molecular Physics. 110: 1127-1137. PMID 26500377 DOI: 10.1080/00268976.2012.664661  0.409
2012 Buck PM, Kumar S, Wang X, Agrawal NJ, Trout BL, Singh SK. Computational methods to predict therapeutic protein aggregation. Methods in Molecular Biology (Clifton, N.J.). 899: 425-51. PMID 22735968 DOI: 10.1007/978-1-61779-921-1_26  0.339
2012 Lauer TM, Agrawal NJ, Chennamsetty N, Egodage K, Helk B, Trout BL. Developability index: a rapid in silico tool for the screening of antibody aggregation propensity. Journal of Pharmaceutical Sciences. 101: 102-15. PMID 21935950 DOI: 10.1002/Jps.22758  0.325
2012 Liu J, Agrawal NJ, Eckmann DM, Ayyaswamy PS, Radhakrishnan R. Top-down mesoscale models and free energy calculations of multivalent protein-protein and protein-membrane interactions in nanocarrier adhesion and receptor trafficking Rsc Biomolecular Sciences. 1: 272-292.  0.546
2011 Ramanan V, Agrawal NJ, Liu J, Engles S, Toy R, Radhakrishnan R. Systems biology and physical biology of clathrin-mediated endocytosis. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 803-15. PMID 21792431 DOI: 10.1039/C1Ib00036E  0.575
2011 Agrawal NJ, Kumar S, Wang X, Helk B, Singh SK, Trout BL. Aggregation in protein-based biotherapeutics: computational studies and tools to identify aggregation-prone regions. Journal of Pharmaceutical Sciences. 100: 5081-95. PMID 21789769 DOI: 10.1002/Jps.22705  0.341
2011 Liu J, Agrawal NJ, Calderon A, Ayyaswamy PS, Eckmann DM, Radhakrishnan R. Multivalent binding of nanocarrier to endothelial cells under shear flow. Biophysical Journal. 101: 319-26. PMID 21767483 DOI: 10.1016/J.Bpj.2011.05.063  0.551
2010 Agrawal NJ, Nukpezah J, Radhakrishnan R. Minimal mesoscale model for protein-mediated vesiculation in clathrin-dependent endocytosis. Plos Computational Biology. 6. PMID 20838575 DOI: 10.1371/Journal.Pcbi.1000926  0.573
2010 Liu J, Agrawal NJ, Ayyaswamy PS, Eckmann DM, Radhakrishnan R. Simulations of Binding Free Energy of Targeted Nanocarriers to Cell Surfaces: the Effects of Antigen Flexural Rigidity, Glycocalyx Resistance, and Shear Flow Biophysical Journal. 98: 392a. DOI: 10.1016/J.Bpj.2009.12.2114  0.57
2009 Agrawal NJ, Radhakrishnan R. Calculation of free energies in fluid membranes subject to heterogeneous curvature fields. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 011925. PMID 19658747 DOI: 10.1103/Physreve.80.011925  0.56
2009 Agrawal NJ, Radhakrishnan R. Calculation of free energies in fluid membranes subject to heterogeneous curvature fields Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 80. DOI: 10.1103/PhysRevE.80.011925  0.522
2009 Radhakrishnan R, Agrawal NJ. Computational Delineation of the Bioenergetics of Protein-Mediated Orchestration of Membrane Vesiculation in Clathrin-Dependent Endocytosis Biophysical Journal. 96: 570a. DOI: 10.1016/J.Bpj.2008.12.3736  0.588
2008 Agrawal NJ, Weinstein J, Radhakrishnan R. Landscape of finite-temperature equilibrium behaviour of curvature-inducing proteins on a bilayer membrane explored using a linearized elastic free energy model. Molecular Physics. 106: 1913-1923. PMID 21243078 DOI: 10.1080/00268970802365990  0.585
2008 Agrawal NJ, Radhakrishnan R, Purohit PK. Geometry of mediating protein affects the probability of loop formation in DNA. Biophysical Journal. 94: 3150-8. PMID 18192346 DOI: 10.1529/Biophysj.107.122986  0.515
2007 Agrawal NJ, Radhakrishnan R. The Role of Glycocalyx in Nanocarrier-Cell Adhesion Investigated Using a Thermodynamic Model and Monte Carlo Simulations. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 111: 15848-15856. PMID 19081797 DOI: 10.1021/Jp074514X  0.565
2007 Liu Y, Purvis J, Shih A, Weinstein J, Agrawal N, Radhakrishnan R. A multiscale computational approach to dissect early events in the Erb family receptor mediated activation, differential signaling, and relevance to oncogenic transformations. Annals of Biomedical Engineering. 35: 1012-25. PMID 17273938 DOI: 10.1007/S10439-006-9251-0  0.647
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