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Raymond Jaihyun Cho - Publications

Affiliations: 
2003 Stanford University, Palo Alto, CA 
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Liu Y, Cook C, Sedgewick AJ, Zhang S, Fassett MS, Ricardo-Gonzalez RR, Harirchian P, Kashem SW, Hanakawa S, Leistico JR, North JP, Taylor MA, Zhang W, Man MQ, Charruyer A, ... ... Cho RJ, et al. Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation. Iscience. 23: 101582. PMID 33205009 DOI: 10.1016/J.Isci.2020.101582  0.334
2020 Zhang S, Leistico JR, Cook C, Liu Y, Cho RJ, Cheng JB, Song JS. Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data. Physical Review. E. 102: 012409. PMID 32794969 DOI: 10.1103/Physreve.102.012409  0.332
2020 Heskett MB, Sanborn JZ, Boniface C, Goode B, Chapman J, Garg K, Rabban JT, Zaloudek C, Benz SC, Spellman PT, Solomon DA, Cho RJ. Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. PMID 31911616 DOI: 10.1038/S41379-019-0446-Y  0.34
2019 Finnegan A, Cho RJ, Luu A, Harirchian P, Lee J, Cheng JB, Song JS. Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators. Frontiers in Genetics. 10: 775. PMID 31552090 DOI: 10.3389/Fgene.2019.00775  0.344
2019 Chiang A, Tan CZ, Kuonen F, Hodgkinson LM, Chiang F, Cho RJ, South AP, Tang JY, Chang ALS, Rieger KE, Oro AE, Sarin KY. Genetic mutations underlying phenotypic plasticity in basosquamous carcinoma. The Journal of Investigative Dermatology. PMID 31207229 DOI: 10.1016/J.Jid.2019.03.1163  0.361
2018 Harirchian P, Lee J, Hilz S, Sedgewick AJ, Perez White BE, Kesling MJ, Mully T, Golovato J, Gray M, Mauro TM, Purdom E, Kim EA, Sbitany H, Bhutani T, Vaske CJ, ... ... Cho RJ, et al. A20 and ABIN1 suppression of a keratinocyte inflammatory program with a shared single cell expression signature in diverse human rashes. The Journal of Investigative Dermatology. PMID 30543901 DOI: 10.1016/J.Jid.2018.10.046  0.322
2018 Cheng JB, Sedgewick AJ, Finnegan AI, Harirchian P, Lee J, Kwon S, Fassett MS, Golovato J, Gray M, Ghadially R, Liao W, Perez White BE, Mauro TM, Mully T, Kim EA, ... ... Cho RJ, et al. Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution. Cell Reports. 25: 871-883. PMID 30355494 DOI: 10.1016/J.Celrep.2018.09.006  0.356
2018 Cho RJ, Alexandrov LB, den Breems NY, Atanasova VS, Farshchian M, Purdom E, Nguyen TN, Coarfa C, Rajapakshe K, Prisco M, Sahu J, Tassone P, Greenawalt EJ, Collisson EA, Wu W, et al. APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa. Science Translational Medicine. 10. PMID 30135250 DOI: 10.1126/Scitranslmed.Aas9668  0.348
2018 North JP, Golovato J, Vaske CJ, Sanborn JZ, Nguyen A, Wu W, Goode B, Stevers M, McMullen K, Perez White BE, Collisson EA, Bloomer M, Solomon DA, Benz SC, Cho RJ. Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma. Nature Communications. 9: 1894. PMID 29760388 DOI: 10.1038/S41467-018-04008-Y  0.34
2017 Cho R, Alexandrov L, Jonkman M, McGrath J, Hovnanian A, Bauer J, Bruckner-Tuderman L, Tsai K, South A. 122 Mutational landscape of highly malignant recessive dystrophic epidermolysis bullosa-associated squamous cell carcinoma Journal of Investigative Dermatology. 137. DOI: 10.1016/J.Jid.2017.02.136  0.301
2017 Cho R, McMullen K, Solomon D, Benz S, Golovato J, Goode B, North J. 114 The genomic landscape of sebaceous cell carcinoma Journal of Investigative Dermatology. 137: S19. DOI: 10.1016/J.Jid.2017.02.128  0.334
2017 Nguyen T, Rajapakshe K, Chitsazzadeh V, Truong K, Schmults C, South A, Cho R, Coarfa C, Tsai K. 097 Genomic analysis reveals drivers of high-risk subsets of cutaneous squamous cell carcinoma Journal of Investigative Dermatology. 137: S17. DOI: 10.1016/J.Jid.2017.02.111  0.324
2016 Cho RJ, Collisson EA. Election 2016: Voting on Variants. Cancer Discovery. 6: 694-6. PMID 27371574 DOI: 10.1158/2159-8290.Cd-16-0559  0.346
2015 Schulman JM, Oh DH, Sanborn JZ, Pincus L, McCalmont TH, Cho RJ. Multiple Hereditary Infundibulocystic Basal Cell Carcinoma Syndrome Associated With a Germline SUFU Mutation. Jama Dermatology. 1-5. PMID 26677003 DOI: 10.1001/Jamadermatol.2015.4233  0.303
2015 Shain AH, Garrido M, Botton T, Talevich E, Yeh I, Sanborn JZ, Chung J, Wang NJ, Kakavand H, Mann GJ, Thompson JF, Wiesner T, Roy R, Olshen AB, Gagnon A, ... ... Cho RJ, et al. Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway. Nature Genetics. PMID 26343386 DOI: 10.1038/Ng.3382  0.333
2015 Sanborn JZ, Chung J, Purdom E, Wang NJ, Kakavand H, Wilmott JS, Butler T, Thompson JF, Mann GJ, Haydu LE, Saw RP, Busam KJ, Lo RS, Collisson EA, Hur JS, ... ... Cho RJ, et al. Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination. Proceedings of the National Academy of Sciences of the United States of America. PMID 26286987 DOI: 10.1073/Pnas.1508074112  0.301
2015 Shain AH, Garrido M, Botton T, Talevich E, Yeh I, Sanborn Z, Chung J, Wang N, Kakavand H, Mann G, Thompson J, Wiesner T, Roy R, Olshen A, Gagnon A, ... ... Cho R, et al. Abstract 2968: Exome sequencing of desmoplastic melanoma reveals recurrent NFKBIE promoter mutations and diverse MAPK/PI3K pathway activating mutations Cancer Research. 75: 2968-2968. DOI: 10.1158/1538-7445.Am2015-2968  0.342
2014 Zheng CL, Wang NJ, Chung J, Moslehi H, Sanborn JZ, Hur JS, Collisson EA, Vemula SS, Naujokas A, Chiotti KE, Cheng JB, Fassihi H, Blumberg AJ, Bailey CV, Fudem GM, ... ... Cho RJ, et al. Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes. Cell Reports. 9: 1228-34. PMID 25456125 DOI: 10.1016/J.Celrep.2014.10.031  0.355
2014 Dimon MT, Wood HM, Rabbitts PH, Liao W, Cho RJ, Arron ST. No evidence for integrated viral DNA in the genome sequence of cutaneous squamous cell carcinoma. The Journal of Investigative Dermatology. 134: 2055-7. PMID 24480882 DOI: 10.1038/Jid.2014.52  0.337
2013 Kluk MJ, Ashworth T, Wang H, Knoechel B, Mason EF, Morgan EA, Dorfman D, Pinkus G, Weigert O, Hornick JL, Chirieac LR, Hirsch M, Oh DJ, South AP, Leigh IM, ... ... Cho RJ, et al. Gauging NOTCH1 Activation in Cancer Using Immunohistochemistry. Plos One. 8: e67306. PMID 23825651 DOI: 10.1371/Journal.Pone.0067306  0.326
2012 Cho RJ, Simpson MA, McGrath JA. Next-Generation Diagnostics for Genodermatoses. The Journal of Investigative Dermatology. 132: E27-8. PMID 26875439 DOI: 10.1038/Skinbio.2012.8  0.373
2012 Collisson EA, Cho RJ. Histology, anatomy, or geography? Exome sequencing begins to delineate somatic mutational differences in esophageal cancer. Cancer Discovery. 2: 870-1. PMID 23071029 DOI: 10.1158/2159-8290.Cd-12-0393  0.31
2012 Collisson EA, Cho RJ, Gray JW. What are we learning from the cancer genome? Nature Reviews. Clinical Oncology. 9: 621-30. PMID 22965149 DOI: 10.1038/Nrclinonc.2012.159  0.328
2012 Cheng JB, Cho RJ. Genetics and epigenetics of the skin meet deep sequence. The Journal of Investigative Dermatology. 132: 923-32. PMID 22237701 DOI: 10.1038/Jid.2011.436  0.38
2011 Wang NJ, Sanborn Z, Arnett KL, Bayston LJ, Liao W, Proby CM, Leigh IM, Collisson EA, Gordon PB, Jakkula L, Pennypacker S, Zou Y, Sharma M, North JP, Vemula SS, ... ... Cho RJ, et al. Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma. Proceedings of the National Academy of Sciences of the United States of America. 108: 17761-6. PMID 22006338 DOI: 10.1073/Pnas.1114669108  0.345
2011 Durinck S, Ho C, Wang NJ, Liao W, Jakkula LR, Collisson EA, Pons J, Chan SW, Lam ET, Chu C, Park K, Hong SW, Hur JS, Huh N, Neuhaus IM, ... ... Cho RJ, et al. Temporal dissection of tumorigenesis in primary cancers. Cancer Discovery. 1: 137-43. PMID 21984974 DOI: 10.1158/2159-8290.Cd-11-0028  0.346
2010 Cho RJ. Rethinking the prosaicism of mosaicism; is it in us? Experimental Dermatology. 19: 1037-9. PMID 21132868 DOI: 10.1111/J.1600-0625.2010.01171.X  0.307
2005 Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, et al. A network-based analysis of systemic inflammation in humans. Nature. 437: 1032-7. PMID 16136080 DOI: 10.1038/Nature03985  0.691
2005 Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, et al. Erratum: A network-based analysis of systemic inflammation in humans (Nature (2005) 437 (1032-1037) DOI: 10.1038/nature03985) Nature. 438. DOI: 10.1038/Nature04362  0.646
2003 Ficenec D, Osborne M, Pradines J, Richards D, Felciano R, Cho RJ, Chen RO, Liefeld T, Owen J, Ruttenberg A, Reich C, Horvath J, Clark T. Computational knowledge integration in biopharmaceutical research. Briefings in Bioinformatics. 4: 260-78. PMID 14582520 DOI: 10.1093/Bib/4.3.260  0.614
2001 Cho RJ, Huang M, Campbell MJ, Dong H, Steinmetz L, Sapinoso L, Hampton G, Elledge SJ, Davis RW, Lockhart DJ. Transcriptional regulation and function during the human cell cycle. Nature Genetics. 27: 48-54. PMID 11137997 DOI: 10.1038/83751  0.673
2000 Drenkard E, Richter BG, Rozen S, Stutius LM, Angell NA, Mindrinos M, Cho RJ, Oefner PJ, Davis RW, Ausubel FM. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis. Plant Physiology. 124: 1483-92. PMID 11115864 DOI: 10.1104/Pp.124.4.1483  0.444
2000 Cho RJ, Campbell MJ. Transcription, genomes, function. Trends in Genetics : Tig. 16: 409-15. PMID 10973070 DOI: 10.1016/S0168-9525(00)02065-5  0.333
1999 Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, et al. Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nature Genetics. 23: 203-7. PMID 10508518 DOI: 10.1038/13833  0.659
1999 Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM. Systematic determination of genetic network architecture. Nature Genetics. 22: 281-5. PMID 10391217 DOI: 10.1038/10343  0.372
1999 Wolfsberg TG, Gabrielian AE, Campbell MJ, Cho RJ, Spouge JL, Landsman D. Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae. Genome Research. 9: 775-792. DOI: 10.1101/Gr.9.8.775  0.361
1998 Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW. A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell. 2: 65-73. PMID 9702192 DOI: 10.1016/S1097-2765(00)80114-8  0.679
1998 Cho RJ, Fromont-Racine M, Wodicka L, Feierbach B, Stearns T, Legrain P, Lockhart DJ, Davis RW. Parallel analysis of genetic selections using whole genome oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 95: 3752-7. PMID 9520439 DOI: 10.1073/Pnas.95.7.3752  0.527
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