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Jaya Prakash - Publications

Affiliations: 
2006-2010 Information Technology Amrita University, Ettimadai R.F., Tamil Nadu, India 
 2011-2014 Computational and Data Sciences Indian Insitute of Science 
 2015- Institute for Biological and Medical Imaging Helmholtz Institut, Neurherberg, Oberschleißheim, Bayern, Germany 
 2015- Electrical Engineering Technical University of Munich (TUM), München, Bayern, Germany 
Area:
Inverse Problems, Biomedical Imaging, Compressive Sensing, Optical and Optoacoustic Imaging
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Madasamy A, Gujrati V, Ntziachristos V, Prakash J. Deep learning methods hold promise for light fluence compensation in three-dimensional optoacoustic imaging. Journal of Biomedical Optics. 27. PMID 36209354 DOI: 10.1117/1.JBO.27.10.106004  0.504
2022 Nakshatri HS, Prakash J. Model resolution matrix based deconvolution improves over non-quadratic penalization in frequency-domain photoacoustic tomography. The Journal of the Acoustical Society of America. 152: 1345. PMID 36182277 DOI: 10.1121/10.0013829  0.342
2022 Ahuja VR, Gupta U, Rapole SR, Saxena N, Hofmann R, Day-Stirrat RJ, Prakash J, Yalavarthy PK. Siamese-SR: A Siamese Super-Resolution Model for Boosting Resolution of Digital Rock Images for Improved Petrophysical Property Estimation. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 31: 3479-3493. PMID 35533161 DOI: 10.1109/TIP.2022.3172211  0.694
2022 Muhammad M, Prakash J, Liapis E, Ntziachristos V, Jüstel D. Weighted model-based optoacoustic reconstruction for partial-view geometries. Journal of Biophotonics. e202100334. PMID 35133073 DOI: 10.1002/jbio.202100334  0.543
2021 Yun M, You SH, Nguyen VH, Prakash J, Glasl S, Gujrati V, Choy HE, Stiel AC, Min JJ, Ntziachristos V. Reporter gene-based optoacoustic imaging of E. coli targeted colon cancer in vivo. Scientific Reports. 11: 24430. PMID 34952915 DOI: 10.1038/s41598-021-04047-4  0.419
2021 Prakash J, Agarwal U, Yalavarthy PK. Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data. Scientific Reports. 11: 18536. PMID 34535710 DOI: 10.1038/s41598-021-97833-z  0.678
2021 Prakash J, Kalva SK, Pramanik M, Yalavarthy PK. Binary photoacoustic tomography for improved vasculature imaging. Journal of Biomedical Optics. 26. PMID 34405599 DOI: 10.1117/1.JBO.26.8.086004  0.661
2021 Liu N, Gujrati V, Malekzadeh-Najafabadi J, Werner JPF, Klemm U, Tang L, Chen Z, Prakash J, Huang Y, Stiel A, Mettenleiter G, Aichler M, Blutke A, Walch A, Kleigrewe K, et al. Croconaine-based nanoparticles enable efficient optoacoustic imaging of murine brain tumors. Photoacoustics. 22: 100263. PMID 33948433 DOI: 10.1016/j.pacs.2021.100263  0.444
2021 Paluru N, Dayal A, Jenssen HB, Sakinis T, Cenkeramaddi LR, Prakash J, Yalavarthy PK. Anam-Net: Anamorphic Depth Embedding-Based Lightweight CNN for Segmentation of Anomalies in COVID-19 Chest CT Images. Ieee Transactions On Neural Networks and Learning Systems. PMID 33544680 DOI: 10.1109/TNNLS.2021.3054746  0.654
2020 Li J, Chekkoury A, Prakash J, Glasl S, Vetschera P, Koberstein-Schwarz B, Olefir I, Gujrati V, Omar M, Ntziachristos V. Spatial heterogeneity of oxygenation and haemodynamics in breast cancer resolved in vivo by conical multispectral optoacoustic mesoscopy. Light, Science & Applications. 9: 57. PMID 33846285 DOI: 10.1038/s41377-020-0295-y  0.43
2020 Yalavarthy PK, Kumar Kalva S, Pramanik M, Prakash J. Non-local means improves total-variation constrained photoacoustic image reconstruction. Journal of Biophotonics. e202000191. PMID 33025761 DOI: 10.1002/jbio.202000191  0.711
2020 Lu T, Wang Y, Li J, Prakash J, Gao F, Ntziachristos V. Full-frequency correction of spatial impulse response in back-projection scheme using space-variant filtering for optoacoustic mesoscopy. Photoacoustics. 19: 100193. PMID 32509524 DOI: 10.1016/J.Pacs.2020.100193  0.515
2020 Li J, Chekkoury A, Prakash J, Glasl S, Vetschera P, Koberstein-Schwarz B, Olefir I, Gujrati V, Omar M, Ntziachristos V. Spatial heterogeneity of oxygenation and haemodynamics in breast cancer resolved in vivo by conical multispectral optoacoustic mesoscopy. Light, Science & Applications. 9: 57. PMID 32337021 DOI: 10.1038/S41377-020-0295-Y  0.494
2020 Chowdhury KB, Prakash J, Karlas A, Justel D, Ntziachristos V. A Synthetic Total Impulse Response Characterization Method for Correction of Hand-held Optoacoustic Images. Ieee Transactions On Medical Imaging. PMID 32324545 DOI: 10.1109/Tmi.2020.2989236  0.59
2020 Yang H, Jüstel D, Prakash J, Karlas A, Helfen A, Masthoff M, Wildgruber M, Ntziachristos V. Soft ultrasound priors in optoacoustic reconstruction: Improving clinical vascular imaging. Photoacoustics. 19: 100172. PMID 32280585 DOI: 10.1016/J.Pacs.2020.100172  0.597
2020 Prakash J, Seyedebrahimi MM, Ghazaryan A, Malekzadeh-Najafabadi J, Gujrati V, Ntziachristos V. Short-wavelength optoacoustic spectroscopy based on water muting. Proceedings of the National Academy of Sciences of the United States of America. PMID 32029585 DOI: 10.1073/Pnas.1910597117  0.413
2019 Gujrati V, Prakash J, Malekzadeh-Najafabadi J, Stiel A, Klemm U, Mettenleiter G, Aichler M, Walch A, Ntziachristos V. Bioengineered bacterial vesicles as biological nano-heaters for optoacoustic imaging. Nature Communications. 10: 1114. PMID 30846699 DOI: 10.1038/S41467-019-09034-Y  0.556
2019 Prakash J, Mandal S, Razansky D, Ntziachristos V. Maximum entropy based non-negative optoacoustic tomographic image reconstruction. Ieee Transactions On Bio-Medical Engineering. PMID 30640596 DOI: 10.1109/Tbme.2019.2892842  0.628
2018 Prakash J, Sanny D, Kalva SK, Pramanik M, Yalavarthy PK. Fractional Regularization to Improve Photoacoustic Tomographic Image Reconstruction. Ieee Transactions On Medical Imaging. PMID 30582534 DOI: 10.1109/Tmi.2018.2889314  0.677
2018 Sanny DR, Prakash J, Kalva SK, Pramanik M, Yalavarthy PK. Spatially variant regularization based on model resolution and fidelity embedding characteristics improves photoacoustic tomography. Journal of Biomedical Optics. 23: 1-4. PMID 30362308 DOI: 10.1117/1.Jbo.23.10.100502  0.691
2018 Neuschmelting V, Kim K, Malekzadeh-Najafabadi J, Jebiwott S, Prakash J, Scherz A, Coleman JA, Kircher MF, Ntziachristos V. WST11 Vascular Targeted Photodynamic Therapy Effect Monitoring by Multispectral Optoacoustic Tomography (MSOT) in Mice. Theranostics. 8: 723-734. PMID 29344301 DOI: 10.7150/Thno.20386  0.475
2017 Malekzadeh-Najafabadi J, Prakash J, Ntziachristos V. Nonlinear optoacoustic readings from diffusive media at near infrared wavelengths. Journal of Biophotonics. PMID 28787111 DOI: 10.1002/Jbio.201600310  0.512
2017 Han Y, Ding L, Ben XL, Razansky D, Prakash J, Ntziachristos V. Three-dimensional optoacoustic reconstruction using fast sparse representation. Optics Letters. 42: 979-982. PMID 28248347 DOI: 10.1364/Ol.42.000979  0.611
2017 He H, Prakash J, Buehler A, Ntziachristos V. Fast sparse recovery and coherence factor weighting in optoacoustic tomography Proceedings of Spie. 10064. DOI: 10.1117/12.2252501  0.611
2016 He H, Prakash J, Buehler A, Ntziachristos V. Optoacoustic Tomography Using Accelerated Sparse Recovery and Coherence Factor Weighting. Tomography (Ann Arbor, Mich.). 2: 138-145. PMID 30042960 DOI: 10.18383/j.tom.2016.00148  0.568
2016 Glinzer A, Ma X, Prakash J, Kimm MA, Lohöfer F, Kosanke K, Pelisek J, Thon MP, Vorlova S, Heinze KG, Eckstein HH, Gee MW, Nitziachristos V, Zernecke A, Wildgruber M. Targeting Elastase for Molecular Imaging of Early Atherosclerotic Lesions. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 28062502 DOI: 10.1161/Atvbaha.116.308726  0.381
2016 Ma X, Phi Van V, Kimm MA, Prakash J, Kessler H, Kosanke K, Feuchtinger A, Aichler M, Gupta A, Rummeny EJ, Eisenblätter M, Siveke J, Walch AK, Braren R, Ntziachristos V, et al. Integrin-Targeted hybrid Fluorescence Molecular Tomography/X-ray Computed Tomography for Imaging Tumor Progression and Early Response in Non-Small Cell Lung Cancer. Neoplasia (New York, N.Y.). 19: 8-16. PMID 27940248 DOI: 10.1016/J.Neo.2016.11.009  0.517
2016 Ma X, Prakash J, Ruscitti F, Glasl S, Stellari FF, Villetti G, Ntziachristos V. Assessment of asthmatic inflammation using hybrid fluorescence molecular tomography-x-ray computed tomography. Journal of Biomedical Optics. 21: 15009. PMID 26803669 DOI: 10.1117/1.Jbo.21.1.015009  0.535
2015 Prakash J, Todd N, Yalavarthy PK. Prior image based temporally constrained reconstruction algorithm for magnetic resonance guided high intensity focused ultrasound. Medical Physics. 42: 6804. PMID 26632038 DOI: 10.1118/1.4934829  0.672
2014 Prakash J, Raju AS, Shaw CB, Pramanik M, Yalavarthy PK. Basis pursuit deconvolution for improving model-based reconstructed images in photoacoustic tomography. Biomedical Optics Express. 5: 1363-77. PMID 24877001 DOI: 10.1364/Boe.5.001363  0.743
2014 Prakash J, Dehghani H, Pogue BW, Yalavarthy PK. Model-resolution-based basis pursuit deconvolution improves diffuse optical tomographic imaging. Ieee Transactions On Medical Imaging. 33: 891-901. PMID 24710158 DOI: 10.1109/Tmi.2013.2297691  0.766
2014 Todd N, Prakash J, Odéen H, de Bever J, Payne A, Yalavarthy P, Parker DL. Toward real-time availability of 3D temperature maps created with temporally constrained reconstruction. Magnetic Resonance in Medicine. 71: 1394-404. PMID 23670981 DOI: 10.1002/Mrm.24783  0.633
2014 Prakash J, Shaw CB, Manjappa R, Kanhirodan R, Yalavarthy PK. Sparse Recovery Methods Hold Promise for Diffuse Optical Tomographic Image Reconstruction Ieee Journal of Selected Topics in Quantum Electronics. 20: 74-82. DOI: 10.1109/Jstqe.2013.2278218  0.726
2013 Shaw CB, Prakash J, Pramanik M, Yalavarthy PK. Least squares QR-based decomposition provides an efficient way of computing optimal regularization parameter in photoacoustic tomography. Journal of Biomedical Optics. 18: 80501. PMID 23903561 DOI: 10.1117/1.Jbo.18.8.080501  0.671
2013 Prakash J, Yalavarthy PK. A LSQR-type method provides a computationally efficient automated optimal choice of regularization parameter in diffuse optical tomography. Medical Physics. 40: 033101. PMID 23464341 DOI: 10.1118/1.4792459  0.681
2013 Prakash J, Yalavarthy PK. Data-resolution based optimal choice of minimum required measurements for image-guided diffuse optical tomography. Optics Letters. 38: 88-90. PMID 23454924 DOI: 10.1364/Ol.38.000088  0.726
2010 Prakash J, Chandrasekharan V, Upendra V, Yalavarthy PK. Accelerating frequency-domain diffuse optical tomographic image reconstruction using graphics processing units. Journal of Biomedical Optics. 15: 066009. PMID 21198183 DOI: 10.1117/1.3506216  0.714
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