| Year |
Citation |
Score |
| 2023 |
Seah YM, Stewart MK, Hoogestraat D, Ryder M, Cookson BT, Salipante SJ, Hoffman NG. Evaluation of Variant Calling Methods for Bacterial Whole-Genome Sequencing Assays. Journal of Clinical Microbiology. e0184222. PMID 37428072 DOI: 10.1128/jcm.01842-22 |
0.372 |
|
| 2022 |
Hayden HS, Joshi S, Radey MC, Vo AT, Forsberg C, Morgan SJ, Waalkes A, Holmes EA, Klee SM, Emond MJ, Singh PK, Salipante SJ. Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections. Mbio. e0142422. PMID 36121157 DOI: 10.1128/mbio.01424-22 |
0.338 |
|
| 2021 |
De Sarkar N, Dasgupta S, Chatterjee P, Coleman I, Ha G, Ang LS, Kohlbrenner EA, Frank SB, Nunez TA, Salipante SJ, Corey E, Morrissey C, Van Allen E, Schweizer MT, Haffner MC, et al. Genomic attributes of homology-directed DNA repair deficiency in metastatic prostate cancer. Jci Insight. 6. PMID 34877933 DOI: 10.1172/jci.insight.152789 |
0.349 |
|
| 2020 |
Kuo AJ, Paulson VA, Hempelmann JA, Beightol M, Todhunter S, Colbert BG, Salipante SJ, Konnick EQ, Pritchard CC, Lockwood CM. Validation and implementation of a modular targeted capture assay for the detection of clinically significant molecular oncology alterations. Practical Laboratory Medicine. 19: e00153. PMID 32123717 DOI: 10.1016/j.plabm.2020.e00153 |
0.339 |
|
| 2019 |
Barnell EK, Waalkes A, Mosior MC, Penewit K, Cotto KC, Danos AM, Sheta LM, Campbell KM, Krysiak K, Rieke D, Spies NC, Skidmore ZL, Pritchard CC, Fehniger TA, Uppaluri R, ... ... Salipante SJ, et al. Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes. Jco Clinical Cancer Informatics. 3: 1-12. PMID 31618044 DOI: 10.1200/CCI.19.00077 |
0.316 |
|
| 2019 |
McLean K, Holmes EA, Penewit K, Lee DK, Hardy SR, Ren M, Krist MP, Huang K, Waalkes A, Salipante SJ. Artificial selection for pathogenicity mutations in identifies novel factors relevant to chronic infection. Infection and Immunity. PMID 30642903 DOI: 10.1128/IAI.00884-18 |
0.313 |
|
| 2018 |
Hause RJ, Pritchard CC, Shendure J, Salipante SJ. Corrigendum: Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. 24: 525. PMID 29634692 DOI: 10.1038/nm0418-525a |
0.418 |
|
| 2018 |
Wu D, Waalkes A, Penewit K, Salipante SJ. Ultrasensitive Detection of Chimerism by Single-Molecule Molecular Inversion Probe Capture and High-Throughput Sequencing of Copy Number Deletion Polymorphisms. Clinical Chemistry. PMID 29549183 DOI: 10.1373/clinchem.2017.284737 |
0.307 |
|
| 2018 |
Grasso C, Giannakis M, Wells D, Wheeler D, Shinbrot E, Zaidi S, Huyghe J, Geybels M, Salipante S, Abril-Rodriguez G, Escuin-Ordinas H, Puig-Saus C, Shin DS, Ogino S, Ribas A, et al. Abstract B011: Immunoediting in untreated mismatch repair deficient colorectal cancer Molecular Cancer Therapeutics. 17. DOI: 10.1158/1535-7163.Targ-17-B011 |
0.409 |
|
| 2018 |
Werth B, Penewit K, Salipante S, Shen T, Xu L, Nath A. 712. Identification of a Novel Tedizolid Resistance Mutation in rpoB of Methicillin-Resistant Staphylococcus aureus Open Forum Infectious Diseases. 5: S256-S256. DOI: 10.1093/Ofid/Ofy210.719 |
0.306 |
|
| 2018 |
Mclean K, Holmes E, Penewit K, Waalkes A, Ren M, Harwood R, Lee S, Gasper J, Manoil C, Salipante S. P036 Whole genome variant analysis and transposon sequencing provides insight into aztreonam resistance in cystic fibrosis Pseudomonas aeruginosa airway infection Journal of Cystic Fibrosis. 17: S69. DOI: 10.1016/S1569-1993(18)30333-3 |
0.312 |
|
| 2017 |
Hause RJ, Pritchard CC, Shendure J, Salipante SJ. Corrigendum: Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. 23: 1241. PMID 28985213 DOI: 10.1038/Nm1017-1241A |
0.418 |
|
| 2017 |
Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ. Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. Plos Genetics. 13: e1006724. PMID 28410416 DOI: 10.1371/journal.pgen.1006724 |
0.709 |
|
| 2016 |
Hause RJ, Pritchard CC, Shendure J, Salipante SJ. Classification and characterization of microsatellite instability across 18 cancer types. Nature Medicine. PMID 27694933 DOI: 10.1038/Nm.4191 |
0.49 |
|
| 2016 |
Cohen SA, Turner EH, Beightol MB, Jacobson A, Gooley TA, Salipante SJ, Haraldsdottir S, Smith C, Scroggins S, Tait JF, Grady WM, Lin EH, Cohn DE, Goodfellow PJ, Arnold MW, et al. Frequent PIK3CA Mutations in Colorectal and Endometrial Tumors with 2 or More Somatic Mutations in Mismatch Repair Genes. Gastroenterology. PMID 27302833 DOI: 10.1053/J.Gastro.2016.06.004 |
0.517 |
|
| 2016 |
Mathias PC, Turner EH, Scroggins SM, Salipante SJ, Hoffman NG, Pritchard CC, Shirts BH. Applying Ancestry and Sex Computation as a Quality Control Tool in Targeted Next-Generation Sequencing. American Journal of Clinical Pathology. 145: 308-15. PMID 27124912 DOI: 10.1093/Ajcp/Aqv098 |
0.499 |
|
| 2016 |
Shirts BH, Casadei S, Jacobson AL, Lee MK, Gulsuner S, Bennett RL, Miller M, Hall SA, Hampel H, Hisama FM, Naylor LV, Goetsch C, Leppig K, Tait JF, Scroggins SM, ... ... Salipante SJ, et al. Improving performance of multigene panels for genomic analysis of cancer predisposition. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 26845104 DOI: 10.1038/Gim.2015.212 |
0.547 |
|
| 2016 |
Grasso CS, Shinbrot E, Yu M, Liesersen M, Chaisson M, Chan A, Connolly C, Dai J, Du M, Fuchs C, Garraway L, Giannakis M, Harrison T, Hsu L, Huyghe J, ... ... Salipante S, et al. Abstract 136: Refining the molecular profile of colorectal tumors to expand prevention and treatment opportunities Cancer Research. 76: 136-136. DOI: 10.1158/1538-7445.Am2016-136 |
0.443 |
|
| 2015 |
Salipante SJ, Adey A, Thomas A, Lee C, Liu YJ, Kumar A, Lewis AP, Wu D, Fromm JR, Shendure J. Recurrent somatic loss of TNFRSF14 in classical Hodgkin lymphoma. Genes, Chromosomes & Cancer. PMID 26650888 DOI: 10.1002/Gcc.22331 |
0.674 |
|
| 2015 |
Hempelmann JA, Scroggins SM, Pritchard CC, Salipante SJ. MSIplus for Integrated Colorectal Cancer Molecular Testing by Next-Generation Sequencing. The Journal of Molecular Diagnostics : Jmd. 17: 705-14. PMID 26322950 DOI: 10.1016/j.jmoldx.2015.05.008 |
0.354 |
|
| 2015 |
Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ. A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. Plos Genetics. 11: e1005413. PMID 26230489 DOI: 10.1371/Journal.Pgen.1005413 |
0.723 |
|
| 2015 |
Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT. Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology. Journal of Clinical Microbiology. 53: 1072-9. PMID 25631811 DOI: 10.1128/Jcm.03385-14 |
0.318 |
|
| 2015 |
Salipante SJ, Roach DJ, Kitzman JO, Snyder MW, Stackhouse B, Butler-Wu SM, Lee C, Cookson BT, Shendure J. Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains. Genome Research. 25: 119-28. PMID 25373147 DOI: 10.1101/Gr.180190.114 |
0.726 |
|
| 2015 |
Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ. A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota Plos Genetics. 11. DOI: 10.1371/journal.pgen.1005413 |
0.71 |
|
| 2015 |
Shiovitz S, Turner E, Beightol M, Jacobson A, Gooley T, Salipante SJ, Haraldsdottir S, Tait JF, Grady WM, Lin EH, De La Chapelle A, Cohn DE, Goodfellow PJ, Arnold M, Hampel H, et al. PIK3CA mutations in colorectal and endometrial cancer with double somatic mismatch repair mutations compared to Lynch syndrome. Journal of Clinical Oncology. 33: 3550-3550. DOI: 10.1200/Jco.2015.33.15_Suppl.3550 |
0.54 |
|
| 2014 |
Pritchard CC, Morrissey C, Kumar A, Zhang X, Smith C, Coleman I, Salipante SJ, Milbank J, Yu M, Grady WM, Tait JF, Corey E, Vessella RL, Walsh T, Shendure J, et al. Complex MSH2 and MSH6 mutations in hypermutated microsatellite unstable advanced prostate cancer. Nature Communications. 5: 4988. PMID 25255306 DOI: 10.1038/Ncomms5988 |
0.566 |
|
| 2014 |
Salipante SJ, Sengupta DJ, Cummings LA, Robinson A, Kurosawa K, Hoogestraat DR, Cookson BT. Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates. International Journal of Medical Microbiology : Ijmm. 304: 1001-10. PMID 25116839 DOI: 10.1016/J.Ijmm.2014.07.003 |
0.368 |
|
| 2014 |
Salipante SJ, Scroggins SM, Hampel HL, Turner EH, Pritchard CC. Microsatellite instability detection by next generation sequencing. Clinical Chemistry. 60: 1192-9. PMID 24987110 DOI: 10.1373/clinchem.2014.223677 |
0.557 |
|
| 2014 |
SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ. Whole-genome sequencing for high-resolution investigation of methicillin-resistant Staphylococcus aureus epidemiology and genome plasticity. Journal of Clinical Microbiology. 52: 2787-96. PMID 24850346 DOI: 10.1128/Jcm.00759-14 |
0.572 |
|
| 2014 |
Salipante SJ, Fromm JR, Shendure J, Wood BL, Wu D. Detection of minimal residual disease in NPM1-mutated acute myeloid leukemia by next-generation sequencing. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 27: 1438-46. PMID 24743218 DOI: 10.1038/Modpathol.2014.57 |
0.512 |
|
| 2014 |
Shirts BH, Salipante SJ, Casadei S, Ryan S, Martin J, Jacobson A, Vlaskin T, Koehler K, Livingston RJ, King MC, Walsh T, Pritchard CC. Deep sequencing with intronic capture enables identification of an APC exon 10 inversion in a patient with polyposis. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 16: 783-6. PMID 24675673 DOI: 10.1038/Gim.2014.30 |
0.312 |
|
| 2014 |
Pritchard CC, Salipante SJ, Koehler K, Smith C, Scroggins S, Wood B, Wu D, Lee MK, Dintzis S, Adey A, Liu Y, Eaton KD, Martins R, Stricker K, Margolin KA, et al. Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer specimens. The Journal of Molecular Diagnostics : Jmd. 16: 56-67. PMID 24189654 DOI: 10.1016/J.Jmoldx.2013.08.004 |
0.682 |
|
| 2014 |
SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ. Whole-genome sequencing for high-resolution investigation of methicillin-resistant Staphylococcus aureus epidemiology and genome plasticity Journal of Clinical Microbiology. 52: 2787-2796. DOI: 10.1128/JCM.00759-14 |
0.517 |
|
| 2014 |
Salipante SJ, Fromm JR, Shendure J, Wood BL, Wu D. Detection of minimal residual disease in NPM1-mutated acute myeloid leukemia by next-generation sequencing Modern Pathology. 27: 1438-1446. DOI: 10.1038/modpathol.2014.57 |
0.48 |
|
| 2013 |
Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, et al. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections. Plos One. 8: e65226. PMID 23734239 DOI: 10.1371/Journal.Pone.0065226 |
0.524 |
|
| 2013 |
Hiatt JB, Pritchard CC, Salipante SJ, O'Roak BJ, Shendure J. Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation. Genome Research. 23: 843-54. PMID 23382536 DOI: 10.1101/Gr.147686.112 |
0.721 |
|
| 2012 |
Pritchard CC, Smith C, Salipante SJ, Lee MK, Thornton AM, Nord AS, Gulden C, Kupfer SS, Swisher EM, Bennett RL, Novetsky AP, Jarvik GP, Olopade OI, Goodfellow PJ, King MC, et al. ColoSeq provides comprehensive lynch and polyposis syndrome mutational analysis using massively parallel sequencing. The Journal of Molecular Diagnostics : Jmd. 14: 357-66. PMID 22658618 DOI: 10.1016/J.Jmoldx.2012.03.002 |
0.368 |
|
| 2012 |
Carlson CA, Kas A, Kirkwood R, Hays LE, Preston BD, Salipante SJ, Horwitz MS. Decoding cell lineage from acquired mutations using arbitrary deep sequencing. Nature Methods. 9: 78-80. PMID 22120468 DOI: 10.1038/Nmeth.1781 |
0.339 |
|
| 2011 |
Kumar A, White TA, MacKenzie AP, Clegg N, Lee C, Dumpit RF, Coleman I, Ng SB, Salipante SJ, Rieder MJ, Nickerson DA, Corey E, Lange PH, Morrissey C, Vessella RL, et al. Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers. Proceedings of the National Academy of Sciences of the United States of America. 108: 17087-92. PMID 21949389 DOI: 10.1073/Pnas.1108745108 |
0.676 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2018 |
Nava Rodrigues D, Rescigno P, Liu D, Yuan W, Carreira S, Lambros MB, Seed G, Mateo J, Riisnaes R, Mullane S, Margolis C, Miao D, Miranda S, Dolling D, Clarke M, ... ... Salipante S, et al. Immunogenomic analyses associate immunological alterations with mismatch repair defects in prostate cancer. The Journal of Clinical Investigation. PMID 30179225 DOI: 10.1172/Jci121924 |
0.3 |
|
| 2020 |
Lieberman JA, Naureckas Li C, Lamb GS, Kane DA, Stewart MK, Mamedov RA, Cookson BT, Salipante SJ. Case Report: Comparison of Plasma Metagenomics to Bacterial PCR in a Case of Prosthetic Valve Endocarditis. Frontiers in Pediatrics. 8: 575674. PMID 33489996 DOI: 10.3389/fped.2020.575674 |
0.298 |
|
| 2009 |
Salk JJ, Salipante SJ, Risques RA, Crispin DA, Li L, Bronner MP, Brentnall TA, Rabinovitch PS, Horwitz MS, Loeb LA. Clonal expansions in ulcerative colitis identify patients with neoplasia. Proceedings of the National Academy of Sciences of the United States of America. 106: 20871-6. PMID 19926851 DOI: 10.1073/Pnas.0909428106 |
0.297 |
|
| 2006 |
Salipante SJ, Horwitz MS. Phylogenetic fate mapping. Proceedings of the National Academy of Sciences of the United States of America. 103: 5448-53. PMID 16569691 DOI: 10.1073/pnas.0601265103 |
0.293 |
|
| 2018 |
Waalkes A, Smith N, Penewit K, Hempelmann J, Konnick EQ, Hause RJ, Pritchard CC, Salipante SJ. Accurate Pan-Cancer Molecular Diagnosis of Microsatellite Instability by Single-Molecule Molecular Inversion Probe Capture and High-Throughput Sequencing. Clinical Chemistry. PMID 29632127 DOI: 10.1373/Clinchem.2017.285981 |
0.293 |
|
| 2020 |
Lieberman J, Kurosawa K, SenGupta DJ, Cookson BT, Salipante SJ, Busch D. Identification of Leptotrichia goodfellowii Infective Endocarditis by Next-Generation Sequencing of 16S rDNA Amplicons. Cold Spring Harbor Molecular Case Studies. PMID 33288524 DOI: 10.1101/mcs.a005876 |
0.292 |
|
| 2021 |
Wu D, Kanaan SB, Penewit K, Waalkes A, Urselli F, Nelson JL, Radich J, Salipante SJ. Ultrasensitive quantitation of genomic chimerism by single-molecule molecular inversion probe capture and high throughput sequencing of copy number deletion polymorphisms. The Journal of Molecular Diagnostics : Jmd. PMID 34775030 DOI: 10.1016/j.jmoldx.2021.10.005 |
0.287 |
|
| 2015 |
Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT. Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology Journal of Clinical Microbiology. 53: 1072-1079. DOI: 10.1128/JCM.03385-14 |
0.287 |
|
| 2016 |
Mather CA, Mooney SD, Salipante SJ, Scroggins S, Wu D, Pritchard CC, Shirts BH. CADD score has limited clinical validity for the identification of pathogenic variants in noncoding regions in a hereditary cancer panel. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 27148939 DOI: 10.1038/Gim.2016.44 |
0.287 |
|
| 2016 |
Cummings LA, Kurosawa K, Hoogestraat DR, SenGupta DJ, Candra F, Doyle M, Thielges S, Land TA, Rosenthal CA, Hoffman NG, Salipante SJ, Cookson BT. Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples. Clinical Chemistry. PMID 27624135 DOI: 10.1373/Clinchem.2016.258806 |
0.286 |
|
| 2020 |
Barrett SR, Hoffman NG, Rosenthal C, Bryan A, Marshall DA, Lieberman J, Greninger AL, Peddu V, Cookson BT, Salipante SJ. Sensitive identification of bacterial DNA in clinical specimens by broad range 16S rRNA enrichment. Journal of Clinical Microbiology. PMID 33028602 DOI: 10.1128/JCM.01605-20 |
0.286 |
|
| 2018 |
Grasso CS, Giannakis M, Wells DK, Hamada T, Mu XJ, Quist M, Nowak JA, Nishihara R, Qian ZR, Inamura K, Morikawa T, Nosho K, Abril-Rodriguez G, Connolly C, Escuin-Ordinas H, ... ... Salipante SJ, et al. Genetic mechanisms of immune evasion in colorectal cancer. Cancer Discovery. PMID 29510987 DOI: 10.1158/2159-8290.Cd-17-1327 |
0.282 |
|
| 2018 |
Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ. Efficient and Scalable Precision Genome Editing inthrough Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection. Mbio. 9. PMID 29463653 DOI: 10.1128/mBio.00067-18 |
0.277 |
|
| 2014 |
Nord A, Salipante SJ, Pritchard C. Copy Number Variant Detection Using Next-Generation Sequencing Clinical Genomics. 165-187. DOI: 10.1016/B978-0-12-404748-8.00011-3 |
0.276 |
|
| 2019 |
McLean K, Rosenthal CA, Sengupta D, Owens J, Cookson B, Hoffman NG, Salipante SJ. Improved species level clinical identification of through broad range PCR and sequencing. Journal of Clinical Microbiology. PMID 31434720 DOI: 10.1128/Jcm.00986-19 |
0.275 |
|
| 2022 |
Penewit K, Salipante SJ. Recombineering in Staphylococcus aureus. Methods in Molecular Biology (Clifton, N.J.). 2479: 135-157. PMID 35583737 DOI: 10.1007/978-1-0716-2233-9_10 |
0.274 |
|
| 2017 |
Waalkes A, Penewit K, Wood BL, Wu D, Salipante SJ. Ultrasensitive detection of acute myeloid leukemia minimal residual disease using single molecule molecular inversion probes. Haematologica. PMID 28572161 DOI: 10.3324/haematol.2017.169136 |
0.271 |
|
| 2023 |
Uribe G, Salipante SJ, Curtis L, Lieberman JA, Kurosawa K, Cookson BT, Hoogestraat D, Stewart MK, Olmstead T, Bourassa L. Evaluation of Fourier transform-infrared spectroscopy (FT-IR) as a control measure for nosocomial outbreak investigations. Journal of Clinical Microbiology. 61: e0034723. PMID 37787542 DOI: 10.1128/jcm.00347-23 |
0.259 |
|
| 2014 |
Salipante SJ, Hoogestraat DR, Abbott AN, Sengupta DJ, Cummings LA, Butler-Wu SM, Stephens K, Cookson BT, Hoffman NG. Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing Journal of Clinical Microbiology. 52: 1789-1792. PMID 24574281 DOI: 10.1128/Jcm.03133-13 |
0.256 |
|
| 2020 |
Penewit K, Salipante SJ. Genome Editing in Staphylococcus aureus by Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection. Methods in Molecular Biology (Clifton, N.J.). 2050: 127-143. PMID 31468487 DOI: 10.1007/978-1-4939-9740-4_14 |
0.254 |
|
| 2014 |
Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG. Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling. Applied and Environmental Microbiology. 80: 7583-91. PMID 25261520 DOI: 10.1128/Aem.02206-14 |
0.253 |
|
| 2013 |
Salipante SJ, SenGupta DJ, Hoogestraat DR, Cummings LA, Bryant BH, Natividad C, Thielges S, Monsaas PW, Chau M, Barbee LA, Rosenthal C, Cookson BT, Hoffman NG. Molecular diagnosis of actinomadura madurae infection by 16S rRNA deep sequencing Journal of Clinical Microbiology. 51: 4262-4265. PMID 24108607 DOI: 10.1128/Jcm.02227-13 |
0.251 |
|
| 2024 |
Hsu JE, Matsen FA, Whitson AJ, Waalkes A, Almazan J, Bourassa LA, Salipante SJ, Long DR. 2023 Neer Award for Basic Science: Genetics of Cutibacterium acnes in Revision Shoulder Arthroplasty: A Large-Scale Bacterial Whole-Genome Sequencing Study. Journal of Shoulder and Elbow Surgery. PMID 38604398 DOI: 10.1016/j.jse.2024.02.039 |
0.25 |
|
| 2014 |
Tidwell T, Wechsler J, Nayak RC, Trump L, Salipante SJ, Cheng JC, Donadieu J, Glaubach T, Corey SJ, Grimes HL, Lutzko C, Cancelas JA, Horwitz MS. Neutropenia-associated ELANE mutations disrupting translation initiation produce novel neutrophil elastase isoforms. Blood. 123: 562-9. PMID 24184683 DOI: 10.1182/Blood-2013-07-513242 |
0.249 |
|
| 2017 |
Bryan A, Kirkpatrick LM, Manaloor JJ, Salipante SJ. 16S rRNA deep sequencing identifies Actinotignum schaalii as the major component of a polymicrobial intra-abdominal infection and implicates a urinary source. Jmm Case Reports. 4: e005091. PMID 29026619 DOI: 10.1099/jmmcr.0.005091 |
0.248 |
|
| 2017 |
Jorth P, McLean K, Ratjen A, Secor PR, Bautista GE, Ravishankar S, Rezayat A, Garudathri J, Harrison JJ, Harwood RA, Penewit K, Waalkes A, Singh PK, Salipante SJ. Evolved Aztreonam Resistance Is Multifactorial and Can Produce Hypervirulence in Pseudomonas aeruginosa. Mbio. 8. PMID 29089424 DOI: 10.1128/Mbio.00517-17 |
0.247 |
|
| 2023 |
Long DR, Penewit K, Lo HY, Almazan J, Holmes EA, Bryan AB, Wolter DJ, Lewis JD, Waalkes A, Salipante SJ. Selection Identifies Staphylococcus aureus Genes Influencing Biofilm Formation. Infection and Immunity. e0053822. PMID 36847490 DOI: 10.1128/iai.00538-22 |
0.245 |
|
| 2023 |
Gründling A, Ji Q, Salipante SJ. Using CRISPR-Cas9-Based Methods for Genome Editing in . Cold Spring Harbor Protocols. PMID 37117018 DOI: 10.1101/pdb.top107919 |
0.244 |
|
| 2022 |
Hernandez-Alonso E, Bourgeois-Nicolaos N, Lepainteur M, Derouin V, Barreault S, Waalkes A, Augusto LA, Gera S, Gleizes O, Tissieres P, Salipante SJ, de Luca D, Doucet-Populaire F. Contaminated Incubators: Source of a Multispecies Enterobacter Outbreak of Neonatal Sepsis. Microbiology Spectrum. e0096422. PMID 35703554 DOI: 10.1128/spectrum.00964-22 |
0.243 |
|
| 2019 |
McLean K, Lee D, Holmes EA, Penewit K, Waalkes A, Ren M, Lee SA, Gasper J, Manoil C, Salipante SJ. Genomic analysis identifies novel resistance genes under selection during inhaled aztreonam therapy . Antimicrobial Agents and Chemotherapy. PMID 31285231 DOI: 10.1128/Aac.00866-19 |
0.24 |
|
| 2016 |
Soge OO, Salipante SJ, No D, Duffy E, Roberts MC. In vitro activity of delafloxacin against clinical Neisseria gonorrhoeae isolates and selection of gonococcal delafloxacin resistance. Antimicrobial Agents and Chemotherapy. PMID 26976873 DOI: 10.1128/AAC.02798-15 |
0.24 |
|
| 2023 |
Tansarli GS, Long DR, Waalkes A, Bourassa LA, Libby SJ, Penewit K, Almazan J, Matsumoto J, Bryson-Cahn C, Rietberg K, Dell BM, Hatley NV, Salipante SJ, Fang FC. Genomic reconstruction and directed interventions in a multidrug-resistant Shigellosis outbreak in Seattle, WA, USA: a genomic surveillance study. The Lancet. Infectious Diseases. PMID 36731480 DOI: 10.1016/S1473-3099(22)00879-9 |
0.239 |
|
| 2018 |
Cheng HH, Salipante SJ, Nelson PS, Montgomery B, Pritchard CC. Polyclonal Reversion Mutations Detected in Circulating Tumor DNA After Platinum Chemotherapy in a Patient With Metastatic Prostate Cancer. Jco Precision Oncology. 2. PMID 32913984 DOI: 10.1200/PO.17.00169 |
0.238 |
|
| 2015 |
Liu GW, Livesay BR, Kacherovsky NA, Cieslewicz M, Lutz E, Waalkes A, Jensen MC, Salipante SJ, Pun SH. Efficient Identification of Murine M2 Macrophage Peptide Targeting Ligands by Phage Display and Next-Generation Sequencing. Bioconjugate Chemistry. 26: 1811-7. PMID 26161996 DOI: 10.1021/Acs.Bioconjchem.5B00344 |
0.235 |
|
| 2023 |
Lo HY, Long DR, Holmes EA, Penewit K, Hodgson T, Lewis JD, Waalkes A, Salipante SJ. Transposon sequencing identifies genes impacting invasion in a human macrophage model. Infection and Immunity. e0022823. PMID 37676013 DOI: 10.1128/iai.00228-23 |
0.234 |
|
| 2020 |
Roach D, Waalkes A, Abanto J, Zunt J, Cucho C, Soria J, Salipante SJ. Whole Genome Sequencing of Peruvian Identifies Novel Plasmid Vectors Bearing Carbapenem Resistance Gene . Open Forum Infectious Diseases. 7: ofaa266. PMID 32760750 DOI: 10.1093/ofid/ofaa266 |
0.231 |
|
| 2016 |
Konnick EQ, Chow SK, Reder NP, Sengupta DJ, Hoogestraat DR, Pottinger PS, Abbott AN, Monsaas PW, Kurosawa K, Stephens K, Salipante SJ, Yeung CC. Incidental identification of Strongyloides stercoralis infection by broad-range 28S rDNA gene sequencing in a patient with a hematolymphoid malignancy. Diagnostic Microbiology and Infectious Disease. PMID 27645607 DOI: 10.1016/J.Diagmicrobio.2016.08.029 |
0.231 |
|
| 2012 |
Salipante SJ, Hoogestraat DR, SenGupta DJ, Murphey D, Panayides K, Hamilton E, Castañeda-Sánchez I, Kennedy J, Monsaas PW, Mendoza L, Stephens K, Dunn JJ, Cookson BT. Molecular diagnosis of subcutaneous Pythium insidiosum infection by use of PCR screening and DNA sequencing Journal of Clinical Microbiology. 50: 1480-1483. PMID 22205808 DOI: 10.1128/Jcm.06126-11 |
0.231 |
|
| 2007 |
Horwitz MS, Duan Z, Korkmaz B, Lee HH, Mealiffe ME, Salipante SJ. Neutrophil elastase in cyclic and severe congenital neutropenia Blood. 109: 1817-1824. PMID 17053055 DOI: 10.1182/blood-2006-08-019166 |
0.23 |
|
| 2015 |
Salipante SJ, Kalapila A, Pottinger PS, Hoogestraat DR, Cummings L, Duchin JS, Sengupta DJ, Pergam SA, Cookson BT, Butler-Wu SM. Characterization of a multidrug-resistant, novel Bacteroides genomospecies. Emerging Infectious Diseases. 21: 95-8. PMID 25529016 DOI: 10.3201/Eid2101.140662 |
0.228 |
|
| 2010 |
Krem MM, Salipante SJ, Horwitz MS. Mutations in a gene encoding a midbody protein in binucleated Reed-Sternberg cells of Hodgkin lymphoma Cell Cycle. 9: 670-675. PMID 20107318 |
0.224 |
|
| 2013 |
Zhou W, Tan Y, Anderson DJ, Crist EM, Ruohola-Baker H, Salipante SJ, Horwitz MS. Use of somatic mutations to quantify random contributions to mouse development. Bmc Genomics. 14: 39. PMID 23327737 DOI: 10.1186/1471-2164-14-39 |
0.22 |
|
| 2010 |
Salipante SJ, Kas A, McMonagle E, Horwitz MS. Phylogenetic analysis of developmental and postnatal mouse cell lineages Evolution and Development. 12: 84-94. PMID 20156285 DOI: 10.1111/j.1525-142X.2009.00393.x |
0.219 |
|
| 2006 |
Salipante SJ, Benson KF, Person RE, Badolato R, Horwitz MS. Neutropenia-Associated Mutations of PFAAP5, a Novel Protein Mediating Transcriptional Repressor Interaction between Gfi1 and Neutrophil Elastase. Blood. 108: 501-501. DOI: 10.1182/blood.v108.11.501.501 |
0.207 |
|
| 2020 |
Peddu V, Bradley BT, Casto AM, Shree R, Colbert BG, Xie H, Santo TK, Huang ML, Cheng EY, Konnick E, Salipante SJ, Jerome KR, Lockwood CM, Greninger AL. High-resolution profiling of human cytomegalovirus cell-free DNA in human plasma highlights its exceptionally fragmented nature. Scientific Reports. 10: 3734. PMID 32111931 DOI: 10.1038/S41598-020-60655-6 |
0.207 |
|
| 2020 |
Long DR, Waalkes A, Panicker VP, Hause RJ, Salipante SJ. Identifying Optimal Loci for the Molecular Diagnosis of Microsatellite Instability. Clinical Chemistry. 66: 1310-1318. PMID 33001187 DOI: 10.1093/clinchem/hvaa177 |
0.206 |
|
| 2008 |
Salipante SJ, Thompson JM, Horwitz MS. Phylogenetic fate mapping: Theoretical and experimental studies applied to the development of mouse fibroblasts Genetics. 178: 967-977. PMID 18245843 DOI: 10.1534/genetics.107.081018 |
0.205 |
|
| 2017 |
Hines KM, Waalkes A, Penewit K, Holmes EA, Salipante SJ, Werth BJ, Xu L. Characterization of the Mechanisms of Daptomycin Resistance among Gram-Positive Bacterial Pathogens by Multidimensional Lipidomics. Msphere. 2. PMID 29242835 DOI: 10.1128/mSphere.00492-17 |
0.204 |
|
| 2022 |
Gallagher LA, Velazquez E, Peterson SB, Charity JC, Radey MC, Gebhardt MJ, Hsu F, Shull LM, Cutler KJ, Macareno K, de Moraes MH, Penewit KM, Kim J, Andrade PA, LaFramboise T, ... Salipante SJ, et al. Genome-wide protein-DNA interaction site mapping in bacteria using a double-stranded DNA-specific cytosine deaminase. Nature Microbiology. 7: 844-855. PMID 35650286 DOI: 10.1038/s41564-022-01133-9 |
0.204 |
|
| 2021 |
Morgan SJ, Durfey SL, Ravishankar S, Jorth P, Ni W, Skerrett DT, Aitken ML, McKone EF, Salipante SJ, Radey MC, Singh PK. A population-level strain genotyping method to study pathogen strain dynamics in human infections. Jci Insight. 6. PMID 34935640 DOI: 10.1172/jci.insight.152472 |
0.203 |
|
| 2018 |
Hempelmann JA, Lockwood CM, Konnick EQ, Schweizer MT, Antonarakis ES, Lotan TL, Montgomery B, Nelson PS, Klemfuss N, Salipante SJ, Pritchard CC. Microsatellite instability in prostate cancer by PCR or next-generation sequencing. Journal For Immunotherapy of Cancer. 6: 29. PMID 29665853 DOI: 10.1186/s40425-018-0341-y |
0.201 |
|
| 2018 |
Zhou Y, Moon A, Hoyle E, Fromm JR, Chen X, Soma L, Salipante SJ, Wood BL, Wu D. Pattern associated leukemia immunophenotypes and measurable disease detection in acute myeloid leukemia or myelodysplastic syndrome with mutated NPM1. Cytometry. Part B, Clinical Cytometry. PMID 30417521 DOI: 10.1002/cyto.b.21744 |
0.195 |
|
| 2022 |
Bosch DE, Yeh MM, Salipante SJ, Jacobson A, Cohen SA, Konnick EQ, Paulson VA. Isolated MLH1 Loss by Immunohistochemistry Because of Benign Germline Polymorphisms. Jco Precision Oncology. 6: e2200227. PMID 36044719 DOI: 10.1200/PO.22.00227 |
0.194 |
|
| 2023 |
McCormick DW, Rassoulian-Barrett SL, Hoogestraat DR, Salipante SJ, SenGupta D, Dietrich EA, Cookson BT, Marx GE, Lieberman JA. Bartonella spp. Infections Identified by Molecular Methods, United States. Emerging Infectious Diseases. 29: 467-476. PMID 36823096 DOI: 10.3201/eid2903.221223 |
0.192 |
|
| 2007 |
Salipante SJ, Horwitz MS. A Phylogenetic Approach to Mapping Cell Fate Current Topics in Developmental Biology. 79: 157-184. PMID 17498550 DOI: 10.1016/S0070-2153(06)79006-8 |
0.192 |
|
| 2007 |
Salipante SJ, Benson KF, Luty J, Hadavi V, Kariminejad R, Kariminejad MH, Rezaei N, Horwitz MS. Double de novo mutations of ELA2 in cyclic and severe congenital neutropenia Human Mutation. 28: 874-881. PMID 17436313 DOI: 10.1002/humu.20529 |
0.191 |
|
| 2020 |
Barrett SLR, Holmes EA, Long DR, Shean RC, Bautista GE, Ravishankar S, Peddu V, Cookson BT, Singh PK, Greninger AL, Salipante SJ. Cell free DNA from respiratory pathogens is detectable in the blood plasma of Cystic Fibrosis patients. Scientific Reports. 10: 6903. PMID 32327704 DOI: 10.1038/S41598-020-63970-0 |
0.188 |
|
| 2009 |
Salipante SJ, Rojas MEB, Korkmaz B, Duan Z, Wechsler J, Benson KF, Person RE, Grimes HL, Horwitz MS. Contributions to neutropenia from PFAAP5 (N4BP2L2), a novel protein mediating transcriptional repressor cooperation between Gfi1 and neutrophil elastase Molecular and Cellular Biology. 29: 4394-4405. PMID 19506020 DOI: 10.1128/MCB.00596-09 |
0.187 |
|
| 2018 |
Harrell M, Salipante S, Jacobson A, Bernards S, Walsh T, Lee M, Konnick E, Pritchard C, Swisher E. Development and implementation of a targeted next generation sequencing methylation panel for the assessment of methylation in ovarian and endometrial cancers Gynecologic Oncology. 149: 174. DOI: 10.1016/j.ygyno.2018.04.396 |
0.185 |
|
| 2022 |
Zhang R, Polenakovik H, Barreras Beltran IA, Waalkes A, Salipante SJ, Xu L, Werth BJ. Emergence of dalbavancin, vancomycin, and daptomycin non-susceptible Staphylococcus aureus in a patient treated with dalbavancin: Case report and isolate characterization. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 35510938 DOI: 10.1093/cid/ciac341 |
0.184 |
|
| 2020 |
Wolter DJ, Scott A, Armbruster CR, Whittington D, Edgar JS, Qin X, Buccat AM, McNamara S, Blackledge M, Waalkes A, Salipante SJ, Ernst RK, Hoffman LR. Repeated isolation of an antibiotic-dependent and temperature-sensitive mutant of Pseudomonas aeruginosa from a cystic fibrosis patient. The Journal of Antimicrobial Chemotherapy. PMID 33259594 DOI: 10.1093/jac/dkaa482 |
0.181 |
|
| 2021 |
Lieberman JA, Bryan A, Mays JA, Stephens K, Kurosawa K, Mathias PC, SenGupta D, Bourassa L, Salipante SJ, Cookson BT. High Clinical Impact of Broad-Range Fungal PCR in Suspected Fungal Sinusitis. Journal of Clinical Microbiology. JCM0095521. PMID 34406798 DOI: 10.1128/JCM.00955-21 |
0.179 |
|
| 2003 |
Salipante SJ, Barlow M, Hall BG. GeneHunter, a Transposon Tool for Identification and Isolation of Cryptic Antibiotic Resistance Genes Antimicrobial Agents and Chemotherapy. 47: 3840-3845. PMID 14638492 DOI: 10.1128/Aac.47.12.3840-3845.2003 |
0.177 |
|
| 2023 |
Krumm N, Khasnavis NS, Radke M, Banda K, Davies HR, Pennil C, McLean K, Paulson VA, Konnick EQ, Johnson WC, Huff G, Nik-Zainal S, Swisher EM, Lockwood CM, Salipante SJ. Diagnosis of Ovarian Carcinoma Homologous Recombination DNA Repair Deficiency From Targeted Gene Capture Oncology Assays. Jco Precision Oncology. 7: e2200720. PMID 37196218 DOI: 10.1200/PO.22.00720 |
0.175 |
|
| 2024 |
Long DR, Bryson-Cahn C, Waalkes A, Holmes EA, Penewit K, Tavolaro C, Bellabarba C, Zhang F, Chan JD, Fang FC, Lynch JB, Salipante SJ. Contribution of the patient microbiome to surgical site infection and antibiotic prophylaxis failure in spine surgery. Science Translational Medicine. 16: eadk8222. PMID 38598612 DOI: 10.1126/scitranslmed.adk8222 |
0.174 |
|
| 2017 |
Werth BJ, Jain R, Hahn A, Cummings L, Weaver T, Waalkes A, Sengupta D, Salipante SJ, Rakita RM, Butler-Wu SM. Emergence of dalbavancin non-susceptible, vancomycin-intermediate Staphylococcus aureus (VISA) after treatment of MRSA central line-associated bloodstream infection with a dalbavancin- and vancomycin-containing regimen. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. PMID 28782651 DOI: 10.1016/j.cmi.2017.07.028 |
0.173 |
|
| 2019 |
Salipante SJ, Jerome KR. Digital PCR-An Emerging Technology with Broad Applications in Microbiology. Clinical Chemistry. PMID 31704712 DOI: 10.1373/clinchem.2019.304048 |
0.172 |
|
| 2023 |
Platt AP, Bradley BT, Nasir N, Stein SR, Ramelli SC, Ramos-Benitez MJ, Dickey JM, Purcell M, Singireddy S, Hays N, Wu J, Raja K, Curto R, Salipante SJ, Chisholm C, et al. Pulmonary Co-Infections Detected Premortem Underestimate Postmortem Findings in a COVID-19 Autopsy Case Series. Pathogens (Basel, Switzerland). 12. PMID 37513779 DOI: 10.3390/pathogens12070932 |
0.171 |
|
| 2009 |
Thompson JM, Salipante SJ. PeakSeeker: a program for interpreting genotypes of mononucleotide repeats. Bmc Research Notes. 2: 17. PMID 19192296 DOI: 10.1186/1756-0500-2-17 |
0.17 |
|
| 2022 |
Ting SY, LaCourse KD, Ledvina HE, Zhang R, Radey MC, Kulasekara HD, Somavanshi R, Bertolli SK, Gallagher LA, Kim J, Penewit KM, Salipante SJ, Xu L, Peterson SB, Mougous JD. Discovery of coordinately regulated pathways that provide innate protection against interbacterial antagonism. Elife. 11. PMID 35175195 DOI: 10.7554/eLife.74658 |
0.169 |
|
| 2020 |
Shen T, Penewit K, Waalkes A, Xu L, Salipante SJ, Nath A, Werth BJ. Identification of a novel tedizolid resistance mutation in rpoB of MRSA after in vitro serial passage. The Journal of Antimicrobial Chemotherapy. PMID 33057715 DOI: 10.1093/jac/dkaa422 |
0.168 |
|
| 2022 |
Cheng EL, Cardle II, Kacherovsky N, Bansia H, Wang T, Zhou Y, Raman J, Yen A, Gutierrez D, Salipante SJ, des Georges A, Jensen MC, Pun SH. Discovery of a Transferrin Receptor 1-Binding Aptamer and Its Application in Cancer Cell Depletion for Adoptive T-Cell Therapy Manufacturing. Journal of the American Chemical Society. 144: 13851-13864. PMID 35875870 DOI: 10.1021/jacs.2c05349 |
0.167 |
|
| 2021 |
Oreskovic A, Waalkes A, Holmes EA, Rosenthal CA, Wilson DPK, Shapiro AE, Drain PK, Lutz BR, Salipante SJ. Characterizing the molecular composition and diagnostic potential of Mycobacterium tuberculosis urinary cell-free DNA using next-generation sequencing: Sequencing TB urine cell-free DNA. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 34562627 DOI: 10.1016/j.ijid.2021.09.042 |
0.165 |
|
| 2020 |
Cummings LA, Hoogestraat DR, Rassoulian-Barrett SL, Rosenthal CA, Salipante SJ, Cookson BT, Hoffman NG. Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture. Scientific Reports. 10: 5446. PMID 32214207 DOI: 10.1038/S41598-020-62424-X |
0.165 |
|
| 2015 |
Zhang MY, Keel SB, Walsh T, Lee MK, Gulsuner S, Watts AC, Pritchard CC, Salipante SJ, Jeng MR, Hofmann I, Williams DA, Fleming MD, Abkowitz JL, King MC, Shimamura A. Genomic analysis of bone marrow failure and myelodysplastic syndromes reveals phenotypic and diagnostic complexity. Haematologica. 100: 42-8. PMID 25239263 DOI: 10.3324/Haematol.2014.113456 |
0.162 |
|
| 2021 |
Durfey SL, Pipavath S, Li A, Vo AT, Ratjen A, Carter S, Morgan SJ, Radey MC, Grogan B, Salipante SJ, Welsh MJ, Stoltz DA, Goss CH, McKone EF, Singh PK. Combining Ivacaftor and Intensive Antibiotics Achieves Limited Clearance of Cystic Fibrosis Infections. Mbio. 12: e0314821. PMID 34903059 DOI: 10.1128/mbio.03148-21 |
0.157 |
|
| 2023 |
Nourmohammadi Abadchi S, Sena LA, Antonarakis ES, Pritchard CC, Eshleman JR, Konnick EQ, Salipante SJ, Shenderov E, Lotan TL. MLH1 Loss in Primary Prostate Cancer. Jco Precision Oncology. 7: e2200611. PMID 37196219 DOI: 10.1200/PO.22.00611 |
0.157 |
|
| 2018 |
Rodrigues DN, Rescigno P, Liu D, Yuan W, Carreira S, Lambros MB, Seed G, Mateo J, Riisnaes R, Mullane S, Margolis C, Miao D, Miranda S, Dolling D, Clarke M, ... ... Salipante S, et al. Immunogenomic analyses associate immunological alterations with mismatch repair defects in prostate cancer. The Journal of Clinical Investigation. 128: 5185. PMID 30382943 DOI: 10.1172/JCI125184 |
0.156 |
|
| 2010 |
Hall BG, Salipante SJ. Molecular epidemiology of Mycobacterium leprae as determined by structure-neighbor clustering Journal of Clinical Microbiology. 48: 1997-2008. PMID 20351204 DOI: 10.1128/Jcm.00149-10 |
0.154 |
|
| 2023 |
Gründling A, Salipante SJ. Introduction of a Recombineering Oligonucleotide and a CRISPR-Cas9 Gene-Targeting Plasmid into for Generating a Gene-Deletion Strain. Cold Spring Harbor Protocols. PMID 37117031 DOI: 10.1101/pdb.prot107921 |
0.154 |
|
| 2019 |
Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ. Erratum for Penewit et al., "Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection". Mbio. 10. PMID 30647160 DOI: 10.1128/mBio.02698-18 |
0.153 |
|
| 2018 |
Penewit K, Holmes EA, McLean K, Ren M, Waalkes A, Salipante SJ. Erratum for Penewit et al., "Efficient and Scalable Precision Genome Editing in Staphylococcus aureus through Conditional Recombineering and CRISPR/Cas9-Mediated Counterselection". Mbio. 9. PMID 30279289 DOI: 10.1128/mBio.01839-18 |
0.153 |
|
| 2023 |
Gründling A, Salipante SJ. Oligonucleotide Design and Construction of a Gene-Targeting CRISPR-Cas9 Plasmid in for Generating a Gene-Deletion Strain in . Cold Spring Harbor Protocols. PMID 37117032 DOI: 10.1101/pdb.prot107920 |
0.153 |
|
| 2011 |
Salipante SJ, Hall BG. Towards the molecular epidemiology of Mycobacterium leprae: Strategies, successes, and shortcomings Infection, Genetics and Evolution. 11: 1505-1513. PMID 21708290 DOI: 10.1016/J.Meegid.2011.06.003 |
0.15 |
|
| 2018 |
Goss CH, Kaneko Y, Khuu L, Anderson GD, Ravishankar S, Aitken ML, Lechtzin N, Zhou G, Czyz DM, McLean K, Olakanmi O, Shuman HA, Teresi M, Wilhelm E, Caldwell E, ... Salipante SJ, et al. Gallium disrupts bacterial iron metabolism and has therapeutic effects in mice and humans with lung infections. Science Translational Medicine. 10. PMID 30257953 DOI: 10.1126/Scitranslmed.Aat7520 |
0.148 |
|
| 2003 |
Salipante SJ, Hall BG. Determining the limits of the evolutionary potential of an antibiotic resistance gene Molecular Biology and Evolution. 20: 653-659. PMID 12679553 DOI: 10.1093/Molbev/Msg074 |
0.147 |
|
| 2009 |
Salipante SJ, Mealiffe ME, Wechsler J, Krem MM, Liu Y, Namkoong S, Bhagat G, Kirchhoff T, Offit K, Lynch H, Wiernik PH, Roshal M, McMaster ML, Tucker M, Fromm JR, et al. Mutations in a gene encoding a midbody kelch protein in familial and sporadic classical Hodgkin lymphoma lead to binucleated cells Proceedings of the National Academy of Sciences of the United States of America. 106: 14920-14925. PMID 19706467 DOI: 10.1073/pnas.0904231106 |
0.146 |
|
| 2023 |
Wang Y, Ledvina HE, Tower CA, Kambarev S, Liu E, Charity JC, Kreuk LSM, Tang Q, Chen Q, Gallagher LA, Radey MC, Rerolle GF, Li Y, Penewit KM, Turkarslan S, ... ... Salipante SJ, et al. Discovery of a glutathione utilization pathway in Francisella that shows functional divergence between environmental and pathogenic species. Cell Host & Microbe. PMID 37453420 DOI: 10.1016/j.chom.2023.06.010 |
0.139 |
|
| 2011 |
Salipante SJ, Hall BG. Inadequacies of minimum spanning trees in molecular epidemiology Journal of Clinical Microbiology. 49: 3568-3575. PMID 21849692 DOI: 10.1128/Jcm.00919-11 |
0.136 |
|
| 2024 |
Lewis JD, Salipante SJ. Development of advanced control material for reverse transcription-mediated bacterial nucleic acid amplification tests. Journal of Clinical Microbiology. e0024324. PMID 38629844 DOI: 10.1128/jcm.00243-24 |
0.132 |
|
| 2020 |
Long DR, Wolter DJ, Lee M, Precit M, McLean K, Holmes E, Penewit K, Waalkes A, Hoffman LR, Salipante SJ. Polyclonality, Shared Strains, and Convergent Evolution in Chronic CF Airway Infection. American Journal of Respiratory and Critical Care Medicine. PMID 33296290 DOI: 10.1164/rccm.202003-0735OC |
0.132 |
|
| 2019 |
Greninger AL, Addetia A, Starr K, Cybulski RJ, Stewart MK, Salipante SJ, Bryan AB, Cookson B, Gaudreau C, Bekal S, Fang FC. International Spread of Multidrug-Resistant Campylobacter coli in Men who have Sex with Men in Washington State and Quebec, 2015-2018. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31665255 DOI: 10.1093/Cid/Ciz1060 |
0.131 |
|
| 2016 |
Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG. Erratum for Salipante et al., Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling. Applied and Environmental Microbiology. 82: 4453. PMID 27364849 DOI: 10.1128/Aem.01390-16 |
0.129 |
|
| 2024 |
Reasoner SA, Bernard R, Waalkes A, Penewit K, Lewis J, Sokolow AG, Brown RF, Edwards KM, Salipante SJ, Hadjifrangiskou M, Nicholson MR. Longitudinal profiling of the intestinal microbiome in children with cystic fibrosis treated with elexacaftor-tezacaftor-ivacaftor. Mbio. e0193523. PMID 38275294 DOI: 10.1128/mbio.01935-23 |
0.126 |
|
| 2023 |
Reasoner SA, Bernard R, Waalkes A, Penewit K, Lewis J, Sokolow AG, Brown RF, Edwards KM, Salipante SJ, Hadjifrangiskou M, Nicholson MR. Longitudinal Profiling of the Intestinal Microbiome in Children with Cystic Fibrosis Treated with Elexacaftor-Tezacaftor-Ivacaftor. Medrxiv : the Preprint Server For Health Sciences. PMID 37645804 DOI: 10.1101/2023.08.11.23293949 |
0.123 |
|
| 2023 |
Long DR, Holmes EA, Goss CH, Singh PK, Waalkes A, Salipante SJ. Cell-free DNA Detects Lung Infection in Modulator-treated People with Cystic Fibrosis. American Journal of Respiratory and Critical Care Medicine. PMID 37540570 DOI: 10.1164/rccm.202305-0844LE |
0.123 |
|
| 2022 |
Yang LF, Kacherovsky N, Liang J, Salipante SJ, Pun SH. SCORe: SARS-CoV-2 Omicron Variant RBD-Binding DNA Aptamer for Multiplexed Rapid Detection and Pseudovirus Neutralization. Analytical Chemistry. PMID 35972202 DOI: 10.1021/acs.analchem.2c01993 |
0.114 |
|
| 2022 |
Werth BJ, Ashford NK, Penewit K, Waalkes A, Holmes EA, Bryan A, Salipante SJ. Evolution of cefiderocol resistance in using serial passage techniques. Jac-Antimicrobial Resistance. 4: dlac011. PMID 35156034 DOI: 10.1093/jacamr/dlac011 |
0.11 |
|
| 2022 |
Yang LF, Kacherovsky N, Panpradist N, Wan R, Liang J, Zhang B, Salipante SJ, Lutz BR, Pun SH. Aptamer Sandwich Lateral Flow Assay (AptaFlow) for Antibody-Free SARS-CoV-2 Detection. Analytical Chemistry. PMID 35532905 DOI: 10.1021/acs.analchem.2c00554 |
0.106 |
|
| 2015 |
Salipante SJ, Kalapila A, Pottinger PS, Hoogestraat DR, Cummings L, Duchin JS, Sengupta DJ, Pergam SA, Cookson BT, Butler-Wu SM. Characterization of a multidrug-resistant, novel bacteroides genomospecies Emerging Infectious Diseases. 21: 95-98. DOI: 10.3201/eid2101.140662 |
0.106 |
|
| 2003 |
Hall BG, Salipante SJ, Barlow M. The metallo-β-lactamases fall into two distinct phylogenetic groups Journal of Molecular Evolution. 57: 249-254. PMID 14629034 DOI: 10.1007/S00239-003-2471-0 |
0.103 |
|
| 2020 |
Werth BJ, Ashford N, Penewit K, Waalkes A, Holmes EA, Ross DH, Shen T, Hines KM, Salipante SJ, Xu L. Dalbavancin exposure in vitro selects for dalbavancin-nonsusceptible and vancomycin-intermediate strains of methicillin-resistant Staphylococcus aureus. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. PMID 32866650 DOI: 10.1016/J.Cmi.2020.08.025 |
0.1 |
|
| 2021 |
Zhang R, Barreras Beltran IA, Ashford NK, Penewit K, Waalkes A, Holmes EA, Hines KM, Salipante SJ, Xu L, Werth BJ. Synergy Between Beta-Lactams and Lipo-, Glyco-, and Lipoglycopeptides, Is Independent of the Seesaw Effect in Methicillin-Resistant . Frontiers in Molecular Biosciences. 8: 688357. PMID 34646861 DOI: 10.3389/fmolb.2021.688357 |
0.099 |
|
| 2019 |
Kacherovsky N, Cardle II, Cheng EL, Yu JL, Baldwin ML, Salipante SJ, Jensen MC, Pun SH. Traceless aptamer-mediated isolation of CD8 T cells for chimeric antigen receptor T-cell therapy. Nature Biomedical Engineering. PMID 31209354 DOI: 10.1038/S41551-019-0411-6 |
0.097 |
|
| 2007 |
Hall BG, Salipante SJ. Retraction: Measures of clade confidence do not correlate with accuracy of phylogenetic trees. Plos Computational Biology. 3: e158. PMID 17658946 DOI: 10.1371/Journal.Pcbi.0030158 |
0.096 |
|
| 2021 |
Kacherovsky N, Yang LF, Dang HV, Cheng EL, Cardle II, Walls AC, McCallum M, Sellers DL, DiMaio F, Salipante SJ, Corti D, Veesler D, Pun S. Discovery and characterization of spike N-terminal domain-binding aptamers for rapid SARS-CoV-2 detection. Angewandte Chemie (International Ed. in English). PMID 34328683 DOI: 10.1002/anie.202107730 |
0.095 |
|
| 2021 |
Bosch DE, Salipante SJ, Schmidt RA, Swanson PE, Bryan A, SenGupta DJ, Truong CD, Yeh MM. Neutrophilic inflammation in gallbladder carcinoma correlates with patient survival: A case-control study. Annals of Diagnostic Pathology. 56: 151845. PMID 34763224 DOI: 10.1016/j.anndiagpath.2021.151845 |
0.095 |
|
| 2007 |
Hall BG, Salipante SJ. Measures of clade confidence do not correlate with accuracy of phylogenetic trees Plos Computational Biology. 3: 0473-0481. PMID 17367204 DOI: 10.1371/Journal.Pcbi.0030051 |
0.091 |
|
| 2024 |
Qi M, Naranjo AR, Duque AJ, Lorey TS, Schapiro JM, Suh-Burgmann BJ, Rummel M, Salipante SJ, Wentzensen N, Greene DN. Evaluation of Pre-Analytical variables for HPV Primary Screening from Self-Collected Vaginal Swabs. The Journal of Molecular Diagnostics : Jmd. PMID 38494078 DOI: 10.1016/j.jmoldx.2024.02.006 |
0.088 |
|
| 2020 |
Hines KM, Shen T, Ashford NK, Waalkes A, Penewit K, Holmes EA, McLean K, Salipante SJ, Werth BJ, Xu L. Occurrence of cross-resistance and β-lactam seesaw effect in glycopeptide-, lipopeptide- and lipoglycopeptide-resistant MRSA correlates with membrane phosphatidylglycerol levels. The Journal of Antimicrobial Chemotherapy. PMID 32016379 DOI: 10.1093/Jac/Dkz562 |
0.086 |
|
| 2020 |
Sylvestre M, Saxby C, Kacherovsky N, Gustafson H, Salipante SJ, Pun SH. Identification of a DNA aptamer that binds to human monocytes and macrophages. Bioconjugate Chemistry. PMID 32589412 DOI: 10.1021/Acs.Bioconjchem.0C00247 |
0.082 |
|
| 2024 |
Duong JT, Pope CE, Hayden HS, Miller C, Salipante SJ, Rowe SM, Solomon GM, Nichols D, Hoffman LR, Narkewicz MR, Green N. Alterations in the fecal microbiota in patients with advanced cystic fibrosis liver disease after 6 months of elexacaftor/tezacaftor/ivacaftor. Journal of Cystic Fibrosis : Official Journal of the European Cystic Fibrosis Society. PMID 38448281 DOI: 10.1016/j.jcf.2024.02.015 |
0.076 |
|
| 2019 |
Winston McPherson G, Long T, Salipante SJ, Rongitsch JA, Hoffman NG, Stephens K, Penewit K, Greene DN. The Vaginal Microbiome of Transgender Men. Clinical Chemistry. 65: 199-207. PMID 30602481 DOI: 10.1373/Clinchem.2018.293654 |
0.068 |
|
| 2005 |
Salipante SJ, Horwitz MS. Mechanisms of dominant congenital neutropenias Drug Discovery Today: Disease Mechanisms. 2: 471-475. DOI: 10.1016/j.ddmec.2005.10.001 |
0.049 |
|
| 2019 |
Sellers DL, Tan JY, Pineda JMB, Peeler DJ, Porubsky VL, Olden BR, Salipante SJ, Pun SH. Targeting Ligands Deliver Model Drug Cargo into the Central Nervous System along Autonomic Neurons. Acs Nano. PMID 31589023 DOI: 10.1021/Acsnano.9B01515 |
0.049 |
|
| 2009 |
Thompson JM, Salipante SJ. PeakSeeker: A program for interpreting genotypes of mononucleotide repeats Bmc Research Notes. 2. DOI: 10.1186/1756-0500-2-17 |
0.04 |
|
| 2004 |
Hall BG, Salipante SJ, Barlow M. Independent origins of subgroup B1 + B2 and subgroup B3 metallo-β-lactamases Journal of Molecular Evolution. 59: 133-141. PMID 15383916 DOI: 10.1007/S00239-003-2572-9 |
0.035 |
|
| 2010 |
Krem MM, Salipante SJ, Wechsler JD, Horwitz MS. The role of KLHDC8B deficiency in Hodgkin lymphoma pathogenesis. Journal of Clinical Oncology. 28: e18528-e18528. DOI: 10.1200/jco.2010.28.15_suppl.e18528 |
0.031 |
|
| 2019 |
Long DR, Hsu JE, Salipante SJ, Bumgarner RE. Letter to the Editor regarding Qui et al: "Cutibacterium acnes and the shoulder microbiome". Journal of Shoulder and Elbow Surgery. 28: e275-e276. PMID 31327397 DOI: 10.1016/J.Jse.2019.04.046 |
0.01 |
|
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