Shalini Oberdoerffer - Publications

Affiliations: 
RNA Processing in Cellular Development NIH (NCI) 

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Arango D, Sturgill D, Yang R, Kanai T, Bauer P, Roy J, Wang Z, Hosogane M, Schiffers S, Oberdoerffer S. Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine. Molecular Cell. PMID 35679869 DOI: 10.1016/j.molcel.2022.05.016  0.435
2020 Oberdoerffer S, Arango D, Hosogane M, Sturgill D, Yankova E, Kouzarides T, Tzelepis K. Acetylation of Cytidine in Messenger RNA Regulates Translation The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.00189  0.428
2019 Arango D, Sturgill D, Oberdoerffer S. Immunoprecipitation and Sequencing of Acetylated RNA. Bio-Protocol. 9: e3278. PMID 33654795 DOI: 10.21769/BioProtoc.3278  0.446
2019 Tomassoni-Ardori F, Fulgenzi G, Becker J, Barrick C, Palko ME, Kuhn S, Koparde V, Cam M, Yanpallewar S, Oberdoerffer S, Tessarollo L. RbFox1 up-regulation impairs BDNF-dependent hippocampal LTP by dysregulating TrkB isoform expression levels. Elife. 8. PMID 31429825 DOI: 10.7554/Elife.49673  0.341
2019 Nanan KK, Sturgill DM, Prigge MF, Thenoz M, Dillman AA, Mandler MD, Oberdoerffer S. TET-Catalyzed 5-Carboxylcytosine Promotes CTCF Binding to Suboptimal Sequences Genome-wide. Iscience. 19: 326-339. PMID 31404833 DOI: 10.1016/J.Isci.2019.07.041  0.627
2018 Arango D, Sturgill D, Alhusaini N, Dillman AA, Sweet TJ, Hanson G, Hosogane M, Sinclair WR, Nanan KK, Mandler MD, Fox SD, Zengeya TT, Andresson T, Meier JL, Coller J, ... Oberdoerffer S, et al. Acetylation of Cytidine in mRNA Promotes Translation Efficiency. Cell. PMID 30449621 DOI: 10.1016/J.Cell.2018.10.030  0.628
2018 Thomas JM, Briney CA, Nance KD, Lopez JE, Thorpe AL, Fox SD, Bortolin-Cavaille ML, Sas-Chen A, Arango D, Oberdoerffer S, Cavaille J, Andresson T, Meier JL. A Chemical Signature for Cytidine Acetylation in RNA. Journal of the American Chemical Society. PMID 30252461 DOI: 10.1021/Jacs.8B06636  0.381
2017 Nanan KK, Ocheltree C, Sturgill D, Mandler MD, Prigge M, Varma G, Oberdoerffer S. Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource. Nucleic Acids Research. 45: 12780-12797. PMID 29244186 DOI: 10.1093/Nar/Gkx900  0.658
2017 Sinclair WR, Arango D, Shrimp JH, Zengeya TT, Thomas JM, Montgomery DC, Fox SD, Andresson T, Oberdoerffer S, Meier JL. Profiling Cytidine Acetylation with Specific Affinity and Reactivity. Acs Chemical Biology. PMID 29039931 DOI: 10.1021/Acschembio.7B00734  0.372
2016 Marina RJ, Oberdoerffer S. Epigenomics meets splicing through the TETs and CTCF. Cell Cycle (Georgetown, Tex.). 15: 1397-9. PMID 27104639 DOI: 10.1080/15384101.2016.1171650  0.457
2016 Marina RJ, Sturgill D, Bailly MA, Thenoz M, Varma G, Prigge MF, Nanan KK, Shukla S, Haque N, Oberdoerffer S. TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing. The Embo Journal. 35: 335-55. PMID 26711177 DOI: 10.15252/Embj.201593235  0.612
2014 Haque N, Oberdoerffer S. Chromatin and splicing. Methods in Molecular Biology (Clifton, N.J.). 1126: 97-113. PMID 24549658 DOI: 10.1007/978-1-62703-980-2_7  0.561
2012 Benson MJ, Aijö T, Chang X, Gagnon J, Pape UJ, Anantharaman V, Aravind L, Pursiheimo JP, Oberdoerffer S, Liu XS, Lahesmaa R, Lähdesmäki H, Rao A. Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells. Proceedings of the National Academy of Sciences of the United States of America. 109: 16252-7. PMID 22991471 DOI: 10.1073/Pnas.1214414109  0.313
2012 Oberdoerffer S. A conserved role for intragenic DNA methylation in alternative pre-mRNA splicing. Transcription. 3: 106-9. PMID 22771943 DOI: 10.4161/trns.19816  0.524
2012 Shukla S, Oberdoerffer S. Co-transcriptional regulation of alternative pre-mRNA splicing. Biochimica Et Biophysica Acta. 1819: 673-83. PMID 22326677 DOI: 10.1016/J.Bbagrm.2012.01.014  0.524
2011 Shukla S, Kavak E, Gregory M, Imashimizu M, Shutinoski B, Kashlev M, Oberdoerffer P, Sandberg R, Oberdoerffer S. CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Nature. 479: 74-9. PMID 21964334 DOI: 10.1038/Nature10442  0.716
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