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Zalman Vaksman, Ph.D. - Publications

Affiliations: 
Department of Genomics, Bioinformatics and Computational Biology Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kim J, Naqvi AS, Corbett RJ, Kaufman RS, Vaksman Z, Brown MA, Miller DP, Phul S, Geng Z, Storm PB, Resnick AC, Stewart DR, Rokita JL, Diskin SJ. AutoGVP: a dockerized workflow integrating ClinVar and InterVar germline sequence variant classification. Biorxiv : the Preprint Server For Biology. PMID 38076939 DOI: 10.1101/2023.11.29.569103  0.703
2023 Kim J, Vaksman Z, Egolf LE, Kaufman R, Evans JP, Conkrite KL, Danesh A, Lopez G, Randall MP, Dent MH, Farra LM, Menghani NL, Dymek M, Desai H, Hausler R, et al. Germline pathogenic variants in neuroblastoma patients are enriched in BARD1 and predict worse survival. Journal of the National Cancer Institute. PMID 37688579 DOI: 10.1093/jnci/djad183  0.582
2023 Randall MP, Egolf LE, Vaksman Z, Samanta M, Tsang M, Groff D, Evans JP, Rokita JL, Layeghifard M, Shlien A, Maris JM, Diskin SJ, Bosse KR. BARD1 germline variants induce haploinsufficiency and DNA repair defects in neuroblastoma. Journal of the National Cancer Institute. PMID 37688570 DOI: 10.1093/jnci/djad182  0.635
2023 Shapiro JA, Gaonkar KS, Spielman SJ, Savonen CL, Bethell CJ, Jin R, Rathi KS, Zhu Y, Egolf LE, Farrow BK, Miller DP, Yang Y, Koganti T, Noureen N, Koptyra MP, ... ... Vaksman Z, et al. OpenPBTA: The Open Pediatric Brain Tumor Atlas. Cell Genomics. 3: 100340. PMID 37492101 DOI: 10.1016/j.xgen.2023.100340  0.594
2023 Randall MP, Egolf LE, Vaksman Z, Samanta M, Tsang M, Groff D, Evans JP, Rokita JL, Layeghifard M, Shlien A, Maris JM, Diskin SJ, Bosse KR. germline variants induce haploinsufficiency and DNA repair defects in neuroblastoma. Biorxiv : the Preprint Server For Biology. PMID 36778420 DOI: 10.1101/2023.01.31.525066  0.629
2023 Kim J, Vaksman Z, Egolf LE, Kaufman R, Evans JP, Conkrite KL, Danesh A, Lopez G, Randall MP, Dent MH, Farra LM, Menghani N, Dymek M, Desai H, Hausler R, et al. Germline pathogenic variants in 786 neuroblastoma patients. Medrxiv : the Preprint Server For Health Sciences. PMID 36747619 DOI: 10.1101/2023.01.23.23284864  0.575
2022 Stundon JL, Ijaz H, Gaonkar KS, Kaufman RS, Jin R, Karras A, Vaksman Z, Kim J, Corbett RJ, Lueder MR, Miller DP, Guo Y, Santi M, Li M, Lopez G, et al. ALT in Pediatric High-Grade Gliomas Can Occur without ATRX Mutation and is Enriched in Patients with Pathogenic Germline MMR Variants. Neuro-Oncology. PMID 36541551 DOI: 10.1093/neuonc/noac278  0.589
2022 Testori A, Vaksman Z, Diskin SJ, Hakonarson H, Capasso M, Iolascon A, Maris JM, Devoto M. Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 35131881 DOI: 10.1158/1055-9965.EPI-21-0782  0.554
2021 Gamble LD, Purgato S, Henderson MJ, Di Giacomo S, Russell AJ, Pigini P, Murray J, Valli E, Milazzo G, Giorgi FM, Cowley M, Ashton LJ, Bhalshankar J, Schleiermacher G, Rihani A, ... ... Vaksman Z, et al. A G316A Polymorphism in the Ornithine Decarboxylase Gene Promoter Modulates MYCN-Driven Childhood Neuroblastoma. Cancers. 13. PMID 33918978 DOI: 10.3390/cancers13081807  0.563
2020 Zhang C, Ostrom QT, Semmes EC, Ramaswamy V, Hansen HM, Morimoto L, de Smith AJ, Pekmezci M, Vaksman Z, Hakonarson H, Diskin SJ, Metayer C, Taylor MD, Wiemels JL, et al. Genetic predisposition to longer telomere length and risk of childhood, adolescent and adult-onset ependymoma. Acta Neuropathologica Communications. 8: 173. PMID 33115534 DOI: 10.1186/s40478-020-01038-w  0.6
2020 Lopez G, Conkrite KL, Doepner M, Rathi KS, Modi A, Vaksman Z, Farra L, Hyson E, Noureddine M, Wei JS, Smith MA, Asgharzadeh S, Seeger R, Khan JS, Guidry Auvil JM, et al. Somatic structural variation targets neurodevelopmental genes and identifies as a tumor suppressor in neuroblastoma. Genome Research. PMID 32796005 DOI: 10.1101/Gr.252106.119  0.678
2020 Zhang C, Ostrom QT, Hansen HM, Gonzalez-Maya J, Hu D, Ziv E, Morimoto L, de Smith AJ, Muskens IS, Kline CN, Vaksman Z, Hakonarson H, Diskin SJ, Kruchko C, Barnholtz-Sloan JS, et al. European genetic ancestry associated with risk of childhood ependymoma. Neuro-Oncology. PMID 32607579 DOI: 10.1093/Neuonc/Noaa130  0.638
2020 Chang X, Bakay M, Liu Y, Glessner J, Rathi KS, Hou C, Qu H, Vaksman Z, Nguyen K, Sleiman PMA, Diskin SJ, Maris JM, Hakonarson H. Mitochondrial DNA haplogroups and susceptibility to neuroblastoma. Journal of the National Cancer Institute. PMID 32096864 DOI: 10.1093/Jnci/Djaa024  0.542
2019 Rokita JL, Rathi KS, Cardenas MF, Upton KA, Jayaseelan J, Cross KL, Pfeil J, Egolf LE, Way GP, Farrel A, Kendsersky NM, Patel K, Gaonkar KS, Modi A, Berko ER, ... ... Vaksman Z, et al. Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design. Cell Reports. 29: 1675-1689.e9. PMID 31693904 DOI: 10.1016/J.Celrep.2019.09.071  0.635
2019 Ijaz H, Koptyra M, Gaonkar KS, Rokita JL, Baubet VP, Tauhid L, Zhu Y, Brown M, Lopez G, Zhang B, Diskin SJ, Vaksman Z, Mason JL, Appert E, Lilly J, et al. Pediatric High Grade Glioma Resources from the Children's Brain Tumor Tissue Consortium (Cbttc). Neuro-Oncology. PMID 31613963 DOI: 10.1093/Neuonc/Noz192  0.592
2019 Avitabile M, Succoio M, Testori A, Cardinale A, Vaksman Z, Lasorsa VA, Cantalupo S, Esposito M, Cimmino F, Montella A, Formicola D, Koster J, Andreotti V, Ghiorzo P, Romano MF, et al. Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene. Carcinogenesis. PMID 31605138 DOI: 10.1093/Carcin/Bgz153  0.678
2019 Egolf LE, Vaksman Z, Lopez G, Rokita JL, Modi A, Basta PV, Hakonarson H, Olshan AF, Diskin SJ. Germline 16p11.2 Microdeletion Predisposes to Neuroblastoma. American Journal of Human Genetics. PMID 31474320 DOI: 10.1016/J.Ajhg.2019.07.020  0.674
2019 Mazul AL, Weinberg CR, Engel SM, Siega-Riz AM, Zou F, Carrier KS, Basta PV, Vaksman Z, Maris JM, Diskin SJ, Maxen C, Naranjo A, Olshan AF. Neuroblastoma in relation to joint effects of vitamin A and maternal and offspring variants in vitamin A-related genes: A report of the Children's Oncology Group. Cancer Epidemiology. 61: 165-171. PMID 31279991 DOI: 10.1016/J.Canep.2019.06.009  0.592
2019 Oldridge DA, Truong B, Russ D, DuBois SG, Vaksman Z, Mosse YP, Diskin SJ, Maris JM, Matthay KK. Differences in Genomic Profiles and Outcomes between Thoracic and Adrenal Neuroblastoma. Journal of the National Cancer Institute. PMID 30793172 DOI: 10.1093/Jnci/Djz027  0.617
2019 Weiner AK, Radaoui AB, Kendsersky NM, Harenza-Rokita JL, Sidoli S, Conkrite KL, Vaksman Z, Rathi K, Raman P, Martinez D, Bhatti T, Tsang M, Pawel B, Garcia BA, Maris JM, et al. Abstract 3650: Integrative mass spectrometry and RNA-sequencing identifies DLK1 as a candidate immunotherapeutic target in neuroblastoma Cancer Research. 79: 3650-3650. DOI: 10.1158/1538-7445.Am2019-3650  0.614
2019 Weiner AK, Radaoui AB, Tsang M, Martinez D, Sidoli S, Conkrite KL, Delaidelli A, Rokita JL, Lane MV, Vaksman Z, Rathi KS, Raman P, Pogoriler J, Bhatti T, Pawel B, et al. Abstract LB-B04: A multi-omic surfaceome study identifies DLK1 as an epigenetically regulated protein and immunotherapeutic target in neuroblastoma Molecular Cancer Therapeutics. 18. DOI: 10.1158/1535-7163.Targ-19-Lb-B04  0.613
2019 Zhang C, Ostrom Q, Hansen H, de Smith A, Kline C, Kruchko C, Vaksman Z, Diskin S, Barnholtz-Sloan J, Ramaswamy V, Taylor M, Bondy M, Metayer C, Wiemels J, Walsh K. PDTM-33. EUROPEAN GENETIC ANCESTRY ASSOCIATED WITH RISK OF CHILDHOOD EPENDYMOMA Neuro-Oncology. 21: vi194-vi194. DOI: 10.1093/Neuonc/Noz175.809  0.651
2019 Ijaz H, Koptyra M, Gaonkar K, Rokita JL, Baubet V, Tauhid L, Zhu Y, Brown M, Lopez G, Zhang B, Diskin S, Vaksman Z, Mason J, Appert E, Lilly J, et al. Pdtm-16. Pediatric High Grade Glioma Resources From The Children’S Brain Tumor Tissue Consortium (Cbttc) And Pediatric Brain Tumor Atlas (Pbta) Neuro-Oncology. 21. DOI: 10.1093/Neuonc/Noz175.792  0.583
2018 Cimmino F, Avitabile M, Diskin SJ, Vaksman Z, Pignataro P, Formicola D, Cardinale A, Testori A, Koster J, de Torres C, Devoto M, Maris JM, Iolascon A, Capasso M. Fine mapping of 2q35 high-risk neuroblastoma locus reveals independent functional risk variants and suggests full-length BARD1 as tumor-suppressor. International Journal of Cancer. PMID 30132831 DOI: 10.1002/Ijc.31822  0.677
2017 Hungate EA, Applebaum MA, Skol AD, Vaksman Z, Diamond M, McDaniel L, Volchenboum SL, Stranger BE, Maris JM, Diskin SJ, Onel K, Cohn SL. Evaluation of Genetic Predisposition for MYCN-Amplified Neuroblastoma. Journal of the National Cancer Institute. 109. PMID 29117357 DOI: 10.1093/Jnci/Djx093  0.669
2017 Chang X, Zhao Y, Hou C, Glessner J, McDaniel L, Diamond MA, Thomas K, Li J, Wei Z, Liu Y, Guo Y, Mentch FD, Qiu H, Kim C, Evans P, ... Vaksman Z, et al. Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk. Nature Communications. 8: 569. PMID 28924153 DOI: 10.1038/S41467-017-00408-8  0.613
2017 McDaniel LD, Conkrite KL, Chang X, Capasso M, Vaksman Z, Oldridge DA, Zachariou A, Horn M, Diamond M, Huo C, Iolascon A, Hakonarson H, Rahman N, Devoto M, Diskin SJ. Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma. Plos Genetics. 13: e1006787. PMID 28545128 DOI: 10.1371/Journal.Pgen.1006787  0.638
2017 Vaksman Z, McDaniel LD, Diamond M, Maris JM, Diskin SJ. Abstract 690: Identifying the genetic basis of stage 4S neuroblastoma Cancer Research. 77: 690-690. DOI: 10.1158/1538-7445.Am2017-690  0.639
2017 Evans JP, Patidar R, Vaksman Z, Sindiri S, Stewart DR, Khan J, Wei JS, Diskin SJ. Abstract 2591: A guide to filtering TARGET Complete Genomics germline variants Cancer Research. 77: 2591-2591. DOI: 10.1158/1538-7445.Am2017-2591  0.579
2016 Applebaum MA, Vaksman Z, Lee SM, Hungate EA, Henderson TO, London WB, Pinto N, Volchenboum SL, Park JR, Naranjo A, Hero B, Pearson AD, Stranger BE, Cohn SL, Diskin SJ. Neuroblastoma survivors are at increased risk for second malignancies: A report from the International Neuroblastoma Risk Group Project. European Journal of Cancer (Oxford, England : 1990). 72: 177-185. PMID 28033528 DOI: 10.1016/J.Ejca.2016.11.022  0.621
2016 Mazul AL, Siega-Riz AM, Weinberg CR, Engel SM, Zou F, Carrier KS, Basta PV, Vaksman Z, Maris JM, Diskin SJ, Maxen C, Naranjo A, Olshan AF. A family-based study of gene variants and maternal folate and choline in neuroblastoma: a report from the Children's Oncology Group. Cancer Causes & Control : Ccc. PMID 27541142 DOI: 10.1007/S10552-016-0799-1  0.607
2016 Fonville NC, Velmurugan KR, Tae H, Vaksman Z, McIver LJ, Garner HR. Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome. Scientific Reports. 6: 27722. PMID 27278669 DOI: 10.1038/srep27722  0.505
2016 Applebaum MA, Vaksman Z, Hungate E, Henderson TO, London WB, Pinto NR, Volchenboum SL, Park JR, Naranjo A, Pearson AD, Hero B, Cohn SL, Diskin S. Second malignancies in patients with neuroblastoma: A report from the International Neuroblastoma Risk Group Project. Journal of Clinical Oncology. 34: 10547-10547. DOI: 10.1200/Jco.2016.34.15_Suppl.10547  0.586
2015 Fonville NC, Vaksman Z, McIver LJ, Garner HR. Population analysis of microsatellite genotypes reveals a signature associated with ovarian cancer. Oncotarget. 6: 11407-20. PMID 25779658 DOI: 10.18632/Oncotarget.2933  0.607
2015 Vaksman Z, Garner HR. Somatic microsatellite variability as a predictive marker for colorectal cancer and liver cancer progression. Oncotarget. 6: 5760-71. PMID 25691061 DOI: 10.18632/Oncotarget.3306  0.527
2014 Vaksman Z, Fonville NC, Tae H, Garner HR. Exome-wide somatic microsatellite variation is altered in cells with DNA repair deficiencies. Plos One. 9: e110263. PMID 25402475 DOI: 10.1371/Journal.Pone.0110263  0.515
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