| Year |
Citation |
Score |
| 2020 |
Zhai X, Lei D, Zhang M, Liu J, Wu H, Yu Y, Zhang L, Ren G. LoTToR: An Algorithm for Missing-Wedge Correction of the Low-Tilt Tomographic 3D Reconstruction of a Single-Molecule Structure. Scientific Reports. 10: 10489. PMID 32591588 DOI: 10.1038/S41598-020-66793-1 |
0.759 |
|
| 2020 |
Ren A, Lu D, Wong E, Hauwiller MR, Alivisatos AP, Ren G. Real-time observation of dynamic structure of liquid-vapor interface at nanometer resolution in electron irradiated sodium chloride crystals. Scientific Reports. 10: 8596. PMID 32451405 DOI: 10.1038/S41598-020-65274-9 |
0.328 |
|
| 2019 |
Lei D, Liu J, Liu H, Cleveland TE, Marino JP, Lei M, Ren G. Single-Molecule 3D Images of "Hole-Hole" IgG1 Homodimers by Individual-Particle Electron Tomography. Scientific Reports. 9: 8864. PMID 31221961 DOI: 10.1038/S41598-019-44978-7 |
0.754 |
|
| 2019 |
Liu J, Wu H, Huang C, Lei D, Zhang M, Xie W, Li J, Ren G. Optimized Negative-Staining Protocol for Lipid-Protein Interactions Investigated by Electron Microscopy. Methods in Molecular Biology (Clifton, N.J.). 2003: 163-173. PMID 31218618 DOI: 10.1007/978-1-4939-9512-7_8 |
0.765 |
|
| 2019 |
Masciotti V, Piantanida L, Naumenko D, Amenitsch H, Fanetti M, Valant M, Lei D, Ren G, Lazzarino M. A DNA origami plasmonic sensor with environment-independent read-out Nano Research. 12: 2900-2907. DOI: 10.1007/S12274-019-2535-0 |
0.706 |
|
| 2018 |
Jay JW, Bray B, Qi Y, Igbinigie E, Wu H, Li J, Ren G. IgG Antibody 3D Structures and Dynamics. Antibodies (Basel, Switzerland). 7. PMID 31544870 DOI: 10.3390/Antib7020018 |
0.415 |
|
| 2018 |
Lei D, Yu Y, Kuang YL, Liu J, Krauss RM, Ren G. Single-molecule 3D imaging of human plasma intermediate-density lipoproteins reveals a polyhedral structure. Biochimica Et Biophysica Acta. Molecular and Cell Biology of Lipids. PMID 30557627 DOI: 10.1016/J.Bbalip.2018.12.004 |
0.774 |
|
| 2018 |
Wu H, Zhai X, Lei D, Liu J, Yu Y, Bie R, Ren G. An Algorithm for Enhancing the Image Contrast of Electron Tomography. Scientific Reports. 8: 16711. PMID 30420636 DOI: 10.1038/S41598-018-34652-9 |
0.756 |
|
| 2018 |
Liu J, Misra A, Reddy S, White MA, Ren G, Rudenko G. Structural Plasticity of Neurexin 1α: Implications for its Role as Synaptic Organizer. Journal of Molecular Biology. PMID 30193986 DOI: 10.1016/J.Jmb.2018.08.026 |
0.331 |
|
| 2018 |
Zhang M, Zhai X, Li J, Albers JJ, Vuletic S, Ren G. Structural basis of the lipid transfer mechanism of phospholipid transfer protein (PLTP). Biochimica Et Biophysica Acta. PMID 29883800 DOI: 10.1016/J.Bbalip.2018.06.001 |
0.412 |
|
| 2018 |
Lei D, Marras AE, Liu J, Huang CM, Zhou L, Castro CE, Su HJ, Ren G. Three-dimensional structural dynamics of DNA origami Bennett linkages using individual-particle electron tomography. Nature Communications. 9: 592. PMID 29426880 DOI: 10.1038/S41467-018-03018-0 |
0.746 |
|
| 2017 |
Ren G, Duan YS. Extended Theory of Harmonic Maps Connects General Relativity to Chaos and Quantum Mechanism. Chaos, Solitons, and Fractals. 103: 567-570. PMID 31097882 DOI: 10.1016/J.Chaos.2017.07.004 |
0.684 |
|
| 2017 |
Zhang HM, Li C, Lei M, Lundin V, Lee HY, Ninonuevo M, Lin K, Han G, Sandoval W, Lei D, Ren G, Zhang J, Liu H. Structural and Functional Characterization of a Hole-Hole Homodimer Variant in a "Knob-Into-Hole" Bispecific Antibody. Analytical Chemistry. PMID 29129068 DOI: 10.1021/Acs.Analchem.7B03830 |
0.726 |
|
| 2017 |
Zhang M, Lei D, Peng B, Yang M, Zhang L, Art Charles M, Rye KA, Krauss RM, Johns DG, Ren G. Assessing the mechanisms of cholesteryl ester transfer protein inhibitors. Biochimica Et Biophysica Acta. PMID 28911944 DOI: 10.1016/J.Bbalip.2017.09.004 |
0.754 |
|
| 2017 |
Ikon N, Shearer J, Liu J, Tran JJ, Feng S, Kamei A, Beckstead JA, Kiss RS, Weers PM, Ren G, Ryan RO. A facile method for isolation of recombinant human apolipoprotein A-I from E. coli. Protein Expression and Purification. PMID 28336201 DOI: 10.1016/J.Pep.2017.03.015 |
0.348 |
|
| 2016 |
Lu Z, Reddy MV, Liu J, Kalichava A, Liu J, Zhang L, Chen F, Wang Y, Holthauzen LM, White MA, Seshadrinathan S, Zhong X, Ren G, Rudenko G. Molecular Architecture of Contactin-associated Protein-like 2 (CNTNAP2) and its Interaction with Contactin 2 (CNTN2). The Journal of Biological Chemistry. PMID 27621318 DOI: 10.1074/Jbc.M116.748236 |
0.302 |
|
| 2016 |
Yu Y, Kuang YL, Lei D, Zhai X, Zhang M, Krauss RM, Ren G. Polyhedral 3D Structure of Human Plasma Very-Low-Density Lipoproteins by Individual Particle Cryo-Electron Tomography. Journal of Lipid Research. PMID 27538822 DOI: 10.1194/Jlr.M070375 |
0.777 |
|
| 2016 |
Liu J, Li H, Zhang L, Rames M, Zhang M, Yu Y, Peng B, Celis CD, Xu A, Zou Q, Yang X, Chen X, Ren G. Fully Mechanically Controlled Automated Electron Microscopic Tomography. Scientific Reports. 6: 29231. PMID 27403922 DOI: 10.1038/Srep29231 |
0.47 |
|
| 2016 |
Lei D, Rames M, Zhang X, Zhang L, Zhang S, Ren G. Insights into the tunnel mechanism of cholesteryl ester transfer protein using all-atom molecular dynamics simulations. The Journal of Biological Chemistry. PMID 27143480 DOI: 10.1074/Jbc.M116.715565 |
0.748 |
|
| 2016 |
Zhang L, Lei D, Smith JM, Zhang M, Tong H, Zhang X, Lu Z, Liu J, Alivisatos AP, Ren G. Three-dimensional structural dynamics and fluctuations of DNA-nanogold conjugates by individual-particle electron tomography. Nature Communications. 7: 11083. PMID 27025159 DOI: 10.1038/Ncomms11083 |
0.757 |
|
| 2016 |
Deng X, Qin X, Chen L, Jia Q, Zhang Y, Zhang Z, Lei D, Ren G, Zhou Z, Wang Z, Li Q, Xie W. Large Conformational Changes of Insertion 3 in Human Glycyl-tRNA synthetase (hGlyRS) during Catalysis. The Journal of Biological Chemistry. PMID 26797133 DOI: 10.1074/Jbc.M115.679126 |
0.723 |
|
| 2016 |
Zhang X, Zhang L, Tong H, Peng B, Rames MJ, Zhang S, Ren G. Corrigendum: 3D Structural Fluctuation of IgG1 Antibody Revealed by Individual Particle Electron Tomography. Scientific Reports. 6: 17919. PMID 26732174 DOI: 10.1038/Srep17919 |
0.491 |
|
| 2016 |
Zhang L, Lei D, Smith JM, Tong H, Zhang X, Alivisatos P, Ren G. Three Dimensional Dynamics and Fluctuations of DNA-Nanogold Dimers by Individual-Particle Electron Tomography Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1024 |
0.753 |
|
| 2015 |
Segrest JP, Jones MK, Catte A, Manchekar M, Datta G, Zhang L, Zhang R, Li L, Patterson JC, Palgunachari MN, Oram JF, Ren G. Surface Density-Induced Pleating of a Lipid Monolayer Drives Nascent High-Density Lipoprotein Assembly. Structure (London, England : 1993). PMID 26095027 DOI: 10.1016/J.Str.2015.05.010 |
0.36 |
|
| 2015 |
Ercius P, Alaidi O, Rames MJ, Ren G. Electron Tomography: A Three-Dimensional Analytic Tool for Hard and Soft Materials Research. Advanced Materials (Deerfield Beach, Fla.). 27: 5638-63. PMID 26087941 DOI: 10.1002/Adma.201501015 |
0.375 |
|
| 2015 |
Zhang X, Zhang L, Tong H, Peng B, Rames MJ, Zhang S, Ren G. 3D Structural Fluctuation of IgG1 Antibody Revealed by Individual Particle Electron Tomography. Scientific Reports. 5: 9803. PMID 25940394 DOI: 10.1038/Srep09803 |
0.535 |
|
| 2015 |
Zhang M, Charles R, Tong H, Zhang L, Patel M, Wang F, Rames MJ, Ren A, Rye KA, Qiu X, Johns DG, Charles MA, Ren G. HDL surface lipids mediate CETP binding as revealed by electron microscopy and molecular dynamics simulation. Scientific Reports. 5: 8741. PMID 25737239 DOI: 10.1038/Srep08741 |
0.424 |
|
| 2014 |
Rames M, Yu Y, Ren G. Optimized negative staining: a high-throughput protocol for examining small and asymmetric protein structure by electron microscopy. Journal of Visualized Experiments : Jove. e51087. PMID 25145703 DOI: 10.3791/51087 |
0.391 |
|
| 2014 |
Ghosh M, Ren G, Simonsen JB, Ryan RO. Cationic lipid nanodisks as an siRNA delivery vehicle. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 92: 200-5. PMID 24840721 DOI: 10.1139/Bcb-2014-0027 |
0.382 |
|
| 2014 |
Ren G, Zhang L, Lu Z, Peng B, Wong E, Lei D, Zhang M, Rames Mj. Visualizing Biological Samples in Liquid Solution by Electron Microscopy Biophysical Journal. 106: 598a. DOI: 10.1016/J.Bpj.2013.11.3311 |
0.753 |
|
| 2014 |
Zhang X, Zhang L, Rames MJ, Ren G. Determination of the Dynamic Structures of Igg Antibody by Individual-Particle Electron Tomography Biophysical Journal. 106: 251a. DOI: 10.1016/J.Bpj.2013.11.1479 |
0.356 |
|
| 2013 |
Garewal M, Zhang L, Ren G. Optimized negative-staining protocol for examining lipid-protein interactions by electron microscopy. Methods in Molecular Biology (Clifton, N.J.). 974: 111-8. PMID 23404274 DOI: 10.1007/978-1-62703-275-9_6 |
0.435 |
|
| 2013 |
Tong H, Zhang L, Kaspar A, Rames MJ, Huang L, Woodnutt G, Ren G. Peptide-conjugation induced conformational changes in human IgG1 observed by optimized negative-staining and individual-particle electron tomography. Scientific Reports. 3: 1089. PMID 23346347 DOI: 10.1038/Srep01089 |
0.359 |
|
| 2013 |
Lei D, Zhang X, Jiang S, Cai Z, Rames MJ, Zhang L, Ren G, Zhang S. Structural features of cholesteryl ester transfer protein: a molecular dynamics simulation study. Proteins. 81: 415-25. PMID 23042613 DOI: 10.1002/Prot.24200 |
0.753 |
|
| 2013 |
Zhang L, Tong H, Garewal M, Ren G. Optimized negative-staining electron microscopy for lipoprotein studies. Biochimica Et Biophysica Acta. 1830: 2150-9. PMID 23032862 DOI: 10.1016/J.Bbagen.2012.09.016 |
0.427 |
|
| 2013 |
Ren G, Zhang L. A 3-D Image of an Individual Protein Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.992 |
0.423 |
|
| 2013 |
Zhang L, Tong H, Ren G. Structure and Function of Cholesteryl Ester Transfer Protein in Cholesterol Transferring Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.936 |
0.44 |
|
| 2012 |
Zhang L, Yan F, Zhang S, Lei D, Charles MA, Cavigiolio G, Oda M, Krauss RM, Weisgraber KH, Rye KA, Pownall HJ, Qiu X, Ren G. Structural basis of transfer between lipoproteins by cholesteryl ester transfer protein. Nature Chemical Biology. 8: 342-9. PMID 22344176 DOI: 10.1038/Nchembio.796 |
0.759 |
|
| 2012 |
Zhang L, Ren G. IPET and FETR: experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure. Plos One. 7: e30249. PMID 22291925 DOI: 10.1371/Journal.Pone.0030249 |
0.411 |
|
| 2012 |
Zhang L, Ren G. High-Resolution Single-Molecule Structure Revealed by Electron Microscopy and Individual Particle Electron Tomography Journal of Physical Chemistry & Biophysics. 2: 1-4. DOI: 10.4172/2161-0398.1000E103 |
0.461 |
|
| 2012 |
Ren G, Zhang L. Asymmetric Small Protein Structure Determination by Individual Particle Electron Tomography Biophysical Journal. 102: 394a. DOI: 10.1016/J.Bpj.2011.11.2153 |
0.438 |
|
| 2011 |
Zhang L, Song J, Cavigiolio G, Ishida BY, Zhang S, Kane JP, Weisgraber KH, Oda MN, Rye KA, Pownall HJ, Ren G. Morphology and structure of lipoproteins revealed by an optimized negative-staining protocol of electron microscopy. Journal of Lipid Research. 52: 175-84. PMID 20978167 DOI: 10.1194/Jlr.D010959 |
0.435 |
|
| 2010 |
Jones MK, Zhang L, Catte A, Li L, Oda MN, Ren G, Segrest JP. Assessment of the validity of the double superhelix model for reconstituted high density lipoproteins: a combined computational-experimental approach. The Journal of Biological Chemistry. 285: 41161-71. PMID 20974855 DOI: 10.1074/Jbc.M110.187799 |
0.387 |
|
| 2010 |
Ren G, Rudenko G, Ludtke SJ, Deisenhofer J, Chiu W, Pownall HJ. Model of human low-density lipoprotein and bound receptor based on cryoEM. Proceedings of the National Academy of Sciences of the United States of America. 107: 1059-64. PMID 20080547 DOI: 10.1073/Pnas.0908004107 |
0.532 |
|
| 2010 |
Zhang L, Song J, Newhouse Y, Zhang S, Weisgraber KH, Ren G. An optimized negative-staining protocol of electron microscopy for apoE4 POPC lipoprotein. Journal of Lipid Research. 51: 1228-36. PMID 19965615 DOI: 10.1194/Jlr.D002493 |
0.423 |
|
| 2010 |
Zhang L, Ren G. Determining the Dynamic Protein Structure by Individual-Particle Electron Tomography: An Individual Antibody Structure at a Nanometer Resolution Biophysical Journal. 98: 441a. DOI: 10.1016/J.Bpj.2009.12.2393 |
0.42 |
|
| 2010 |
Zhang L, Kaspar A, Woodnutt G, Ren G. Monitoring the Structural Changes of Conjugated Antibodies by High-Resolution Electron Microscopy and Individual-Particle Electron Tomography Biophysical Journal. 98: 440. DOI: 10.1016/J.Bpj.2009.12.2392 |
0.367 |
|
| 2010 |
Zhang L, Cavigiolio G, Wang J, Rye K, Oda M, Ren G. Structure of 9.6nm Discoidal High-Density Lipoprotein Revealed by Individual-Particle Electron Tomography Biophysical Journal. 98: 440a. DOI: 10.1016/J.Bpj.2009.12.2391 |
0.459 |
|
| 2010 |
Zhang L, Cavigiolio G, Oda M, Rye K, Ren G. A Method to Study the Time-Dependent Remodeling of High Density Lipoproteins by Individual-Particle Electron Cryo-Tomography Biophysical Journal. 98: 440a. DOI: 10.1016/J.Bpj.2009.12.2390 |
0.376 |
|
| 2010 |
Ren G, Zhang S, Cavigiolio G, Lei D, Oda M, Weisgraber KH, Rye K, Pownall HJ, Qiu X. Cholesteryl Ester Transfer Protein Penetrates Lipoproteins For Cholesteryl Ester Transfer Biophysical Journal. 98: 36a. DOI: 10.1016/J.Bpj.2009.12.212 |
0.747 |
|
| 2010 |
Ren G, Rudenko G, Ludtke SJ, Deisenhofer J, Pownall HJ, Chiu W. The Molecular Architecture of Human Low Density Lipoprotein and Bound Receptor Revealed by Electron Cryo-Microscopy Biophysical Journal. 98: 384a-385a. DOI: 10.1016/J.Bpj.2009.12.2070 |
0.569 |
|
| 2009 |
Chen B, Ren X, Neville T, Jerome WG, Hoyt DW, Sparks D, Ren G, Wang J. Apolipoprotein AI tertiary structures determine stability and phospholipid-binding activity of discoidal high-density lipoprotein particles of different sizes Protein Science. 18: 921-935. PMID 19384992 DOI: 10.1002/Pro.101 |
0.427 |
|
| 2009 |
Cho WJ, Ren G, Lee JS, Jeftinija K, Jeftinija S, Jena BP. Nanoscale 3D contour map of protein assembly within the astrocyte porosome complex. Cell Biology International. 33: 224-9. PMID 19084606 DOI: 10.1016/J.Cellbi.2008.11.008 |
0.395 |
|
| 2009 |
Tufteland M, Ren G, Ryan RO. Nanodisks derived from amphotericin B lipid complex. Journal of Pharmaceutical Sciences. 97: 4425-32. PMID 18271034 DOI: 10.1002/Jps.21325 |
0.313 |
|
| 2008 |
Cho WJ, Ren G, Jena BP. EM 3D contour maps provide protein assembly at the nanoscale within the neuronal porosome complex Journal of Microscopy. 232: 106-111. PMID 19017207 DOI: 10.1111/J.1365-2818.2008.02088.X |
0.393 |
|
| 2008 |
Silva RA, Huang R, Morris J, Fang J, Gracheva EO, Ren G, Kontush A, Jerome WG, Rye KA, Davidson WS. Structure of apolipoprotein A-I in spherical high density lipoproteins of different sizes. Proceedings of the National Academy of Sciences of the United States of America. 105: 12176-81. PMID 18719128 DOI: 10.1073/Pnas.0803626105 |
0.418 |
|
| 2008 |
Cavigiolio G, Shao B, Geier EG, Ren G, Heinecke JW, Oda MN. The interplay between size, morphology, stability, and functionality of high-density lipoprotein subclasses. Biochemistry. 47: 4770-9. PMID 18366184 DOI: 10.1021/Bi7023354 |
0.381 |
|
| 2008 |
Nguyen TS, Weers PMM, Raussens V, Wang Z, Ren G, Sulchek T, Hoeprich PD, Ryan RO. Amphotericin B induces interdigitation of apolipoprotein stabilized nanodisk bilayers Biochimica Et Biophysica Acta - Biomembranes. 1778: 303-312. PMID 17980702 DOI: 10.1016/J.Bbamem.2007.10.005 |
0.344 |
|
| 2007 |
Ren G, Gao K, Bushman FD, Yeager M. Single-particle Image Reconstruction of a Tetramer of HIV Integrase Bound to DNA Journal of Molecular Biology. 366: 286-294. PMID 17157316 DOI: 10.1016/J.Jmb.2006.11.029 |
0.586 |
|
| 2006 |
Tama F, Ren G, Brooks CL, Mitra AK. Model of the toxic complex of anthrax: responsive conformational changes in both the lethal factor and the protective antigen heptamer. Protein Science : a Publication of the Protein Society. 15: 2190-200. PMID 16943448 DOI: 10.1110/Ps.062293906 |
0.6 |
|
| 2006 |
Colliex C, Cowley JM, Dudarev SL, Fink M, Gjønnes J, Hilderbrandt R, Howie A, Lynch DF, Peng LM, Ren G, Ross AW, Smith VH, Spence JCH, Steeds JW, Wang J, et al. Chapter 4.3 Electron diffraction International Tables For Crystallography. DOI: 10.1107/97809553602060000593 |
0.534 |
|
| 2005 |
Ren G, Quispe J, Leppla SH, Mitra AK. Large-scale structural changes accompany binding of lethal factor to anthrax protective antigen: a cryo-electron microscopic study. Structure (London, England : 1993). 12: 2059-66. PMID 15530370 DOI: 10.1016/J.Str.2004.09.010 |
0.614 |
|
| 2004 |
Becker CF, Strop P, Bass RB, Hansen KC, Locher KP, Ren G, Yeager M, Rees DC, Kochendoerfer GG. Conversion of a mechanosensitive channel protein from a membrane-embedded to a water-soluble form by covalent modification with amphiphiles. Journal of Molecular Biology. 343: 747-58. PMID 15465059 DOI: 10.1016/J.Jmb.2004.08.062 |
0.579 |
|
| 2004 |
Mitra AK, Célia H, Ren G, Luz JG, Wilson IA, Teyton L. Supine orientation of a murine MHC class I molecule on the membrane bilayer. Current Biology : Cb. 14: 718-24. PMID 15084288 DOI: 10.1016/J.Cub.2004.04.004 |
0.58 |
|
| 2002 |
Mitra AK, Ren G, Reddy VS, Cheng A, Froger A. The architecture of a water-selective pore in the lipid bilayer visualized by electron crystallography in vitreous ice. Novartis Foundation Symposium. 245: 33-50. DOI: 10.1002/0470868759.Ch4 |
0.606 |
|
| 2000 |
Ren G, Cheng A, Reddy V, Melnyk P, Mitra AK. Three-dimensional fold of the human AQP1 water channel determined at 4 A resolution by electron crystallography of two-dimensional crystals embedded in ice. Journal of Molecular Biology. 301: 369-87. PMID 10926515 DOI: 10.1006/Jmbi.2000.3949 |
0.624 |
|
| 2000 |
Ren G, Cheng A, Melnyk P, Mitra AK. Polymorphism in the packing of aquaporin-1 tetramers in 2-D crystals. Journal of Structural Biology. 130: 45-53. PMID 10806090 DOI: 10.1006/Jsbi.2000.4211 |
0.583 |
|
| 1997 |
Sheng HW, Ren G, Peng LM, Hu ZQ, Lu K. Epitaxial dependence of the melting behavior of In nanoparticles embedded in Al matrices Journal of Materials Research. 12: 119-123. DOI: 10.1557/Jmr.1997.0019 |
0.471 |
|
| 1996 |
Peng L-, Ren G, Dudarev SL, Whelan MJ. Debye–Waller Factors and Absorptive Scattering Factors of Elemental Crystals Acta Crystallographica Section A. 52: 456-470. DOI: 10.1107/S010876739600089X |
0.459 |
|
| 1996 |
Peng L-, Ren G, Dudarev SL, Whelan MJ. Robust Parameterization of Elastic and Absorptive Electron Atomic Scattering Factors Acta Crystallographica Section A. 52: 257-276. DOI: 10.1107/S0108767395014371 |
0.463 |
|
| 1996 |
Sheng HW, Ren G, Peng LM, Hu ZQ, Lu K. Superheating and melting-point depression of Pb nanoparticles embedded in Al matrices Philosophical Magazine Letters. 73: 179-186. DOI: 10.1080/095008396180812 |
0.481 |
|
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