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Yuhua Song, PhD - Publications

Affiliations: 
Biomedical Engineering University of Alabama, Birmingham, Birmingham, AL, United States 
Area:
Molecular Modeling, Death-inducing signaling complex
Website:
https://labs.uab.edu/yhsong/
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kober DL, Stuchell-Brereton MD, Kluender CE, Dean HB, Strickland MR, Steinberg DF, Nelson SS, Baban B, Holtzman DM, Frieden C, Alexander-Brett J, Roberson ED, Song Y, Brett TJ. Functional insights from biophysical study of TREM2 interactions with apoE and Aβ. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 33090700 DOI: 10.1002/alz.12194  0.449
2020 Yang H, Ahmad ZA, Song Y. Molecular insight for the role of key residues of calreticulin in its binding activities: A computational study. Computational Biology and Chemistry. 85: 107228. PMID 32062378 DOI: 10.1016/J.Compbiolchem.2020.107228  0.416
2019 Dean HB, Roberson ED, Song Y. Neurodegenerative Disease-Associated Variants in TREM2 Destabilize the Apical Ligand-Binding Region of the Immunoglobulin Domain. Frontiers in Neurology. 10: 1252. PMID 32021611 DOI: 10.3389/Fneur.2019.01252  0.488
2019 Wang L, Song Y. Molecular insights into the effect of an apoptotic raft-like bilayer on the conformation and dynamics of calreticulin. Biochimica Et Biophysica Acta. Biomembranes. 183146. PMID 31816323 DOI: 10.1016/J.Bbamem.2019.183146  0.438
2018 Fancy RM, Kim H, Napier T, Buchsbaum DJ, Zinn KR, Song Y. Calmodulin antagonist enhances DR5-mediated apoptotic signaling in TRA-8 resistant triple negative breast cancer cells. Journal of Cellular Biochemistry. PMID 29663486 DOI: 10.1002/Jcb.26848  0.335
2018 Wang L, Murphy-Ullrich JE, Song Y. Multiscale Simulation of the Interaction of Calreticulin-Thrombospondin-1 Complex with a Model Membrane Microdomain. Journal of Biomolecular Structure & Dynamics. 1-33. PMID 29380675 DOI: 10.1080/07391102.2018.1433065  0.376
2018 Fancy RM, Li J, Hong H, Mountz JD, Murphy-Ullrich JE, Katiyar SK, Zhang J, Song Y. Cell Surface Calreticulin-LRP1 Binding and its Role in Apoptotic Cell Engulfment Biophysical Journal. 114: 464a-465a. DOI: 10.1016/J.Bpj.2017.11.2562  0.345
2017 Wang L, Pan D, Yan Q, Song Y. Activation Mechanisms of αVβ3 Integrin by Binding to Fibronectin: A Computational Study. Protein Science : a Publication of the Protein Society. PMID 28340512 DOI: 10.1002/Pro.3163  0.403
2017 Fancy RM, Kim H, Zhou T, Zinn KR, Buchsbaum DJ, Song Y. Calmodulin Binding to Death Receptor 5-mediated Death-inducing Signaling Complex in Breast Cancer Cells. Journal of Cellular Biochemistry. PMID 28092099 DOI: 10.1002/Jcb.25882  0.388
2016 Fancy RM, Wang L, Zeng Q, Wang H, Zhou T, Buchsbaum DJ, Song Y. Characterization of the Interactions between Calmodulin and Death Receptor 5 in Triple-Negative and Estrogen Receptor Positive Breast Cancer Cells: An Integrated Experimental and Computational Study. The Journal of Biological Chemistry. PMID 27129269 DOI: 10.1074/Jbc.M116.727727  0.435
2016 Yang H, Song Y. Structural Insight for Roles of DR5 Death Domain Mutations on Oligomerization of DR5 Death Domain-FADD Complex in the Death-Inducing Signaling Complex Formation: A Computational Study. Journal of Molecular Modeling. 22: 89. PMID 26995783 DOI: 10.1007/S00894-016-2941-0  0.451
2016 Yang H, Murphy-Ullrich JE, Song Y. Molecular Insights for the Role of Key Residues of Calreticulin in its Binding Activities Biophysical Journal. 110: 53a. DOI: 10.1016/J.Bpj.2015.11.349  0.409
2015 Fancy RM, Buchsbaum DJ, Zhou T, Song Y. Abstract 2931: Calmodulin-DR5 binding in breast cancer: Independent of TRA-8 sensitivity Cancer Research. 75: 2931-2931. DOI: 10.1158/1538-7445.Am2015-2931  0.301
2015 Wang L, Murphy-Ullrich JE, Song Y. Effect of an Apoptotic Membrane raft on the Conformational and Dynamical Changes of Calreticulin Biophysical Journal. 108: 90a. DOI: 10.1016/J.Bpj.2014.11.525  0.353
2014 Wang L, Murphy-Ullrich JE, Song Y. Molecular insight into the effect of lipid bilayer environments on thrombospondin-1 and calreticulin interactions. Biochemistry. 53: 6309-22. PMID 25260145 DOI: 10.1021/Bi500662V  0.376
2014 Fancy RM, Wang L, Napier T, Lin J, Jing G, Lucius AL, McDonald JM, Zhou T, Song Y. Characterization of calmodulin-Fas death domain interaction: an integrated experimental and computational study. Biochemistry. 53: 2680-8. PMID 24702583 DOI: 10.1021/Bi500228H  0.435
2014 Fancy RM, Wang H, Zhou T, Song Y. Abstract 2282: Calmodulin binding to DR-5 and the role of CaM-DR-5 binding in DR-5-mediated DISC formation in breast cancer Cancer Research. 74: 2282-2282. DOI: 10.1158/1538-7445.Am2014-2282  0.366
2014 Wang L, Murphy-Ullrich J, Song Y. Molecular Insight for the Effect of Lipid Raft on Thrombospondin-1 and Calreticulin Interactions Biophysical Journal. 106: 712a. DOI: 10.1016/J.Bpj.2013.11.3939  0.387
2013 Yan Q, McDonald JM, Zhou T, Song Y. Structural insight for the roles of fas death domain binding to FADD and oligomerization degree of the Fas-FADD complex in the death-inducing signaling complex formation: a computational study. Proteins. 81: 377-85. PMID 23042204 DOI: 10.1002/Prot.24193  0.43
2013 Napier T, Fancy R, Zhou T, Mountz J, Song Y. Abstract 2955: Effect of the combined treatment of TRA-8, an agonistic DR5 antibody, and tamoxifen on breast cancer cells. Cancer Research. 73: 2955-2955. DOI: 10.1158/1538-7445.Am2013-2955  0.31
2012 Fancy R, Napier T, Jing G, McDonald JM, Zhou T, Song Y. Abstract 4754: Quantitative characterization of calmodulin and Fas death domain interactions Cancer Research. 72: 4754-4754. DOI: 10.1158/1538-7445.Am2012-4754  0.436
2011 Pan D, Yan Q, Chen Y, McDonald JM, Song Y. Trifluoperazine regulation of calmodulin binding to Fas: a computational study. Proteins. 79: 2543-56. PMID 21656570 DOI: 10.1002/Prot.23081  0.464
2011 Yan Q, Murphy-Ullrich JE, Song Y. Molecular and structural insight into the role of key residues of thrombospondin-1 and calreticulin in thrombospondin-1-calreticulin binding. Biochemistry. 50: 566-73. PMID 21142150 DOI: 10.1016/J.Bpj.2010.12.3123  0.436
2011 Yan Q, McDonald JM, Song Y. Abstract 19: Structural insight for the role of Fas binding to FADD and oligomerization degree of Fas/FADD complex in death inducing signaling complex formation Cancer Research. 71: 19-19. DOI: 10.1158/1538-7445.Am2011-19  0.452
2010 Pan D, Song Y. Role of altered sialylation of the I-like domain of beta1 integrin in the binding of fibronectin to beta1 integrin: thermodynamics and conformational analyses. Biophysical Journal. 99: 208-17. PMID 20655849 DOI: 10.1016/J.Bpj.2010.03.063  0.367
2010 Yan Q, Murphy-Ullrich JE, Song Y. Structural insight into the role of thrombospondin-1 binding to calreticulin in calreticulin-induced focal adhesion disassembly. Biochemistry. 49: 3685-94. PMID 20337411 DOI: 10.1021/Bi902067F  0.456
2010 Pan D, Yan Q, Chen Y, McDonald JM, Song Y. Abstract 96: Conformational and thermodynamics analyses of the regulation of trifluoperazine on camodulin binding to Fas: Implications for cancer chemotherapy Cancer Research. 70: 96-96. DOI: 10.1158/1538-7445.Am10-96  0.461
2010 Pan D, Wilson JT, Chaikof EL, Song Y. Effect of the Conjugation of Peg to the PLL on the Micro- and Mesoscopic Properties of a POPC Bilayer Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.513  0.325
2009 Pan D, Yan Q, Song Y. Effect of Trifluoperazine on Ca2+ -Bound Calmodulin binding to Fas Death Domain for DISC Formation Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3064  0.455
2008 Suever JD, Chen Y, McDonald JM, Song Y. Conformation and free energy analyses of the complex of calcium-bound calmodulin and the Fas death domain. Biophysical Journal. 95: 5913-21. PMID 18820240 DOI: 10.1529/Biophysj.108.130542  0.442
2008 Liu Y, Pan D, Bellis SL, Song Y. Effect of altered glycosylation on the structure of the I-like domain of beta1 integrin: a molecular dynamics study. Proteins. 73: 989-1000. PMID 18536010 DOI: 10.1002/Prot.22126  0.359
2008 Lee SJ, Song Y, Baker NA. Molecular dynamics simulations of asymmetric NaCl and KCl solutions separated by phosphatidylcholine bilayers: potential drops and structural changes induced by strong Na+-lipid interactions and finite size effects. Biophysical Journal. 94: 3565-76. PMID 18222999 DOI: 10.1529/Biophysj.107.116335  0.336
2005 Song Y, Guallar V, Baker NA. Molecular dynamics simulations of salicylate effects on the micro- and mesoscopic properties of a dipalmitoylphosphatidylcholine bilayer. Biochemistry. 44: 13425-38. PMID 16216066 DOI: 10.1021/Bi0506829  0.34
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