Savithramma Dinesh-Kumar - Publications

Affiliations: 
University of California, Davis, Davis, CA 
Area:
Plant-microbe interactions; autophagy; NLRs; PRRs; immune signaling; N gene; PCD; programmed cell death; proteomics; viral vectors; VIGS

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nagalakshmi U, Meier N, Dinesh-Kumar SP. Virus-Induced Heritable Gene Editing in Plants. Methods in Molecular Biology (Clifton, N.J.). 2724: 273-288. PMID 37987913 DOI: 10.1007/978-1-0716-3485-1_20  0.347
2023 Li Y, Zhang Y, Dinesh-Kumar SP. TurboID-Based Proximity Labeling: A Method to Decipher Protein-Protein Interactions in Plants. Methods in Molecular Biology (Clifton, N.J.). 2724: 257-272. PMID 37987912 DOI: 10.1007/978-1-0716-3485-1_19  0.312
2023 Spiegelman Z, Dinesh-Kumar SP. Breaking Boundaries: The Perpetual Interplay Between Tobamoviruses and Plant Immunity. Annual Review of Virology. PMID 37254097 DOI: 10.1146/annurev-virology-111821-122847  0.331
2022 Sertsuvalkul N, DeMell A, Dinesh-Kumar SP. The Complex Roles of Autophagy in Plant Immunity. Febs Letters. PMID 35460270 DOI: 10.1002/1873-3468.14356  0.346
2022 Gao Z, Zhang D, Wang X, Zhang X, Wen Z, Zhang Q, Li D, Dinesh-Kumar SP, Zhang Y. Coat proteins of necroviruses target 14-3-3a to subvert MAPKKKα-mediated antiviral immunity in plants. Nature Communications. 13: 716. PMID 35132090 DOI: 10.1038/s41467-022-28395-5  0.339
2021 Li Y, Meier N, Dinesh-Kumar SP. Parasite effectors target helper NLRs in plants to suppress immunity-related cell death. Plos Biology. 19: e3001395. PMID 34534206 DOI: 10.1371/journal.pbio.3001395  0.302
2020 Ellison EE, Nagalakshmi U, Gamo ME, Huang PJ, Dinesh-Kumar S, Voytas DF. Multiplexed heritable gene editing using RNA viruses and mobile single guide RNAs. Nature Plants. PMID 32483329 DOI: 10.1038/S41477-020-0670-Y  0.33
2019 Meier N, Hatch C, Nagalakshmi U, Dinesh-Kumar SP. Perspectives on intracellular perception of plant viruses. Molecular Plant Pathology. PMID 31282091 DOI: 10.1111/mpp.12839  0.378
2018 Park E, Caplan JL, Dinesh-Kumar SP. Dynamic coordination of plastid morphological change by cytoskeleton for chloroplast-nucleus communication during plant immune responses. Plant Signaling & Behavior. 1-3. PMID 30067472 DOI: 10.1080/15592324.2018.1500064  0.311
2017 Park E, Nedo A, Caplan JL, Dinesh-Kumar SP. Plant-microbe interactions: organelles and the cytoskeleton in action. The New Phytologist. PMID 29250789 DOI: 10.1111/Nph.14959  0.325
2017 Park E, Lee HY, Woo J, Choi D, Dinesh-Kumar SP. Spatiotemporal monitoring of Pseudomonas effectors via type III secretion using split fluorescent protein fragments. The Plant Cell. PMID 28619883 DOI: 10.1105/Tpc.17.00047  0.323
2017 Michelmore RW, Coaker G, Bart R, Beattie GA, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-van den Akker S, Gassmann W, Greenberg J, Harrison R, He P, et al. Foundational and translational research opportunities to improve plant health. Molecular Plant-Microbe Interactions : Mpmi. PMID 28398839 DOI: 10.1094/Mpmi-01-17-0010-Cr  0.375
2016 Feng B, Ma S, Chen S, Zhu N, Zhang S, Yu B, Yu Y, Le B, Chen X, Dinesh-Kumar SP, Shan L, He P. PARylation of the forkhead-associated domain protein DAWDLE regulates plant immunity. Embo Reports. PMID 27797852 DOI: 10.15252/Embr.201642486  0.391
2016 Seo E, Woo J, Park E, Bertolani SJ, Siegel JB, Choi D, Dinesh-Kumar SP. Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4. Autophagy. 0. PMID 27540766 DOI: 10.1080/15548627.2016.1217373  0.377
2016 Fondong V, Nagalakshmi U, Dinesh-Kumar S. Novel Functional Genomics Approaches: A Promising Future in the Combat Against Plant Viruses. Phytopathology. PMID 27392181 DOI: 10.1094/Phyto-03-16-0145-Fi  0.317
2016 Lemos M, Xiao Y, Bjornson M, Wang JZ, Hicks D, Souza A, Wang CQ, Yang P, Ma S, Dinesh-Kumar S, Dehesh K. The plastidial retrograde signal methyl erythritol cyclopyrophosphate is a regulator of salicylic acid and jasmonic acid crosstalk. Journal of Experimental Botany. PMID 26733689 DOI: 10.1093/Jxb/Erv550  0.39
2015 Ma S, Dinesh-Kumar SP. Plant protein kinase substrates identification using protein microarrays. Methods in Molecular Biology (Clifton, N.J.). 1306: 159-65. PMID 25930701 DOI: 10.1007/978-1-4939-2648-0_12  0.311
2015 Ali Z, Abul-Faraj A, Li L, Ghosh N, Piatek M, Mahjoub A, Aouida M, Piatek A, Baltes NJ, Voytas DF, Dinesh-Kumar S, Mahfouz MM. Efficient Virus-Mediated Genome Editing in Plants Using the CRISPR/Cas9 System. Molecular Plant. 8: 1288-91. PMID 25749112 DOI: 10.1016/J.Molp.2015.02.011  0.323
2014 Padmanabhan MS, Dinesh-Kumar SP. The conformational and subcellular compartmental dance of plant NLRs during viral recognition and defense signaling. Current Opinion in Microbiology. 20: 55-61. PMID 24906192 DOI: 10.1016/J.Mib.2014.05.003  0.372
2014 Park E, Woo J, Dinesh-Kumar SP. Arabidopsis ATG4 cysteine proteases specificity toward ATG8 substrates. Autophagy. 10: 926-7. PMID 24658121 DOI: 10.4161/Auto.28280  0.391
2014 Woo J, Park E, Dinesh-Kumar SP. Differential processing of Arabidopsis ubiquitin-like Atg8 autophagy proteins by Atg4 cysteine proteases. Proceedings of the National Academy of Sciences of the United States of America. 111: 863-8. PMID 24379391 DOI: 10.1073/Pnas.1318207111  0.344
2013 Padmanabhan MS, Ma S, Burch-Smith TM, Czymmek K, Huijser P, Dinesh-Kumar SP. Novel positive regulatory role for the SPL6 transcription factor in the N TIR-NB-LRR receptor-mediated plant innate immunity. Plos Pathogens. 9: e1003235. PMID 23516366 DOI: 10.1371/Journal.Ppat.1003235  0.303
2012 Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, ... ... Dinesh-Kumar SP, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 8: 445-544. PMID 22966490 DOI: 10.4161/Auto.19496  0.33
2012 Bachan S, Dinesh-Kumar SP. Tobacco rattle virus (TRV)-based virus-induced gene silencing. Methods in Molecular Biology (Clifton, N.J.). 894: 83-92. PMID 22678574 DOI: 10.1007/978-1-61779-882-5_6  0.308
2011 Lee HY, Bowen CH, Popescu GV, Kang HG, Kato N, Ma S, Dinesh-Kumar S, Snyder M, Popescu SC. Arabidopsis RTNLB1 and RTNLB2 Reticulon-like proteins regulate intracellular trafficking and activity of the FLS2 immune receptor. The Plant Cell. 23: 3374-91. PMID 21949153 DOI: 10.1105/Tpc.111.089656  0.307
2011 Hayward AP, Dinesh-Kumar SP. What can plant autophagy do for an innate immune response? Annual Review of Phytopathology. 49: 557-76. PMID 21370973 DOI: 10.1146/Annurev-Phyto-072910-095333  0.38
2011 Hayward A, Padmanabhan M, Dinesh-Kumar SP. Virus-induced gene silencing in nicotiana benthamiana and other plant species. Methods in Molecular Biology (Clifton, N.J.). 678: 55-63. PMID 20931372 DOI: 10.1007/978-1-60761-682-5_5  0.316
2010 Wang K, Uppalapati SR, Zhu X, Dinesh-Kumar SP, Mysore KS. SGT1 positively regulates the process of plant cell death during both compatible and incompatible plant-pathogen interactions. Molecular Plant Pathology. 11: 597-611. PMID 20695999 DOI: 10.1111/J.1364-3703.2010.00631.X  0.335
2009 Padmanabhan M, Dinesh-Kumar SP. Virus-induced gene silencing as a tool for delivery of dsRNA into plants. Cold Spring Harbor Protocols. 2009: pdb.prot5139. PMID 20147069 DOI: 10.1101/Pdb.Prot5139  0.333
2009 Caplan JL, Zhu X, Mamillapalli P, Marathe R, Anandalakshmi R, Dinesh-Kumar SP. Induced ER chaperones regulate a receptor-like kinase to mediate antiviral innate immune response in plants. Cell Host & Microbe. 6: 457-69. PMID 19917500 DOI: 10.1016/J.Chom.2009.10.005  0.336
2009 Seay M, Hayward AP, Tsao J, Dinesh-Kumar SP. Something old, something new: plant innate immunity and autophagy. Current Topics in Microbiology and Immunology. 335: 287-306. PMID 19802571 DOI: 10.1007/978-3-642-00302-8_14  0.361
2009 Hayward AP, Tsao J, Dinesh-Kumar SP. Autophagy and plant innate immunity: Defense through degradation. Seminars in Cell & Developmental Biology. 20: 1041-7. PMID 19406248 DOI: 10.1016/J.Semcdb.2009.04.012  0.375
2009 Padmanabhan M, Dinesh-Kumar SP. Virus-induced gene silencing as a tool for delivery of dsRNA into plants Cold Spring Harbor Protocols. 4. DOI: 10.1101/pdb.prot5139  0.307
2008 Caplan J, Dinesh-Kumar SP. Using viral vectors to silence endogenous genes. Current Protocols in Microbiology. 16I.6.1-16I.6.13. PMID 18770586 DOI: 10.1002/9780471729259.Mc16I06S01  0.349
2008 Caplan J, Padmanabhan M, Dinesh-Kumar SP. Plant NB-LRR Immune Receptors: From Recognition to Transcriptional Reprogramming Cell Host and Microbe. 3: 126-135. PMID 18329612 DOI: 10.1016/J.Chom.2008.02.010  0.333
2008 Klionsky DJ, Abeliovich H, Agostinis P, Agrawal DK, Aliev G, Askew DS, Baba M, Baehrecke EH, Bahr BA, Ballabio A, Bamber BA, Bassham DC, Bergamini E, Bi X, Biard-Piechaczyk M, ... Dinesh-Kumar S, et al. Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy. 4: 151-75. PMID 18188003 DOI: 10.4161/Auto.5338  0.338
2008 Patel S, Dinesh-Kumar SP. Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Autophagy. 4: 20-7. PMID 17932459 DOI: 10.4161/Auto.5056  0.376
2007 Burch-Smith TM, Dinesh-Kumar SP. The functions of plant TIR domains. Science's Stke : Signal Transduction Knowledge Environment. 2007: pe46. PMID 17726177 DOI: 10.1126/Stke.4012007Pe46  0.328
2006 Patel S, Caplan J, Dinesh-Kumar SP. Autophagy in the control of programmed cell death. Current Opinion in Plant Biology. 9: 391-6. PMID 16713731 DOI: 10.1016/J.Pbi.2006.05.007  0.385
2006 Seay M, Patel S, Dinesh-Kumar SP. Autophagy and plant innate immunity. Cellular Microbiology. 8: 899-906. PMID 16681833 DOI: 10.1111/J.1462-5822.2006.00715.X  0.336
2005 Seay MD, Dinesh-Kumar SP. Life after death: are autophagy genes involved in cell death and survival during plant innate immune responses? Autophagy. 1: 185-6. PMID 16874062 DOI: 10.4161/Auto.1.3.2080  0.321
2005 Soosaar JL, Burch-Smith TM, Dinesh-Kumar SP. Mechanisms of plant resistance to viruses. Nature Reviews. Microbiology. 3: 789-98. PMID 16132037 DOI: 10.1038/Nrmicro1239  0.38
2005 Liu Y, Schiff M, Czymmek K, Tallóczy Z, Levine B, Dinesh-Kumar SP. Autophagy regulates programmed cell death during the plant innate immune response. Cell. 121: 567-577. PMID 15907470 DOI: 10.1016/J.Cell.2005.03.007  0.364
2004 Liu Y, Nakayama N, Schiff M, Litt A, Irish VF, Dinesh-Kumar SP. Virus induced gene silencing of a DEFICIENS ortholog in Nicotiana benthamiana. Plant Molecular Biology. 54: 701-11. PMID 15356389 DOI: 10.1023/B:Plan.0000040899.53378.83  0.331
2004 Burch-Smith TM, Anderson JC, Martin GB, Dinesh-Kumar SP. Applications and advantages of virus-induced gene silencing for gene function studies in plants. The Plant Journal : For Cell and Molecular Biology. 39: 734-46. PMID 15315635 DOI: 10.1111/J.1365-313X.2004.02158.X  0.368
2004 Liu Y, Burch-Smith T, Schiff M, Feng S, Dinesh-Kumar SP. Molecular chaperone Hsp90 associates with resistance protein N and its signaling proteins SGT1 and Rar1 to modulate an innate immune response in plants. The Journal of Biological Chemistry. 279: 2101-8. PMID 14583611 DOI: 10.1074/Jbc.M310029200  0.312
2002 Liu Y, Schiff M, Serino G, Deng XW, Dinesh-Kumar SP. Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. The Plant Cell. 14: 1483-96. PMID 12119369 DOI: 10.1105/Tpc.002493  0.311
1997 Baker B, Zambryski P, Staskawicz B, Dinesh-Kumar SP. Signaling in plant-microbe interactions. Science (New York, N.Y.). 276: 726-33. PMID 9115193 DOI: 10.1126/Science.276.5313.726  0.376
1993 Dinesh-Kumar SP, Miller WA. Control of start codon choice on a plant viral RNA encoding overlapping genes Plant Cell. 5: 679-692. PMID 8329899 DOI: 10.1105/Tpc.5.6.679  0.301
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