| Year |
Citation |
Score |
| 2024 |
Shibata M, Lin X, Onuchic JN, Yura K, Cheng RR. Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies. Biophysical Journal. PMID 38291753 DOI: 10.1016/j.bpj.2024.01.028 |
0.692 |
|
| 2022 |
Ng Chau K, George JT, Onuchic JN, Lin X, Levine H. Contact map dependence of a T-cell receptor binding repertoire. Physical Review. E. 106: 014406. PMID 35974642 DOI: 10.1103/PhysRevE.106.014406 |
0.432 |
|
| 2021 |
Lin X, George JT, Schafer NP, Chau KN, Birnbaum ME, Clementi C, Onuchic JN, Levine H. Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire. Nature Computational Science. 1: 362-373. PMID 36090450 DOI: 10.1038/s43588-021-00076-1 |
0.408 |
|
| 2021 |
Oliveira Junior AB, Lin X, Kulkarni P, Onuchic JN, Roy S, Leite VBP. Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms. Journal of Chemical Theory and Computation. PMID 33871257 DOI: 10.1021/acs.jctc.1c00027 |
0.498 |
|
| 2020 |
Chen M, Chen X, Jin S, Lu W, Lin X, Wolynes PG. Protein Structure Refinement Guided by Atomic Packing Frustration Analysis. The Journal of Physical Chemistry. B. PMID 32931278 DOI: 10.1021/Acs.Jpcb.0C06719 |
0.43 |
|
| 2020 |
Guo WH, Qi X, Yu X, Liu Y, Chung CI, Bai F, Lin X, Lu D, Wang L, Chen J, Su LH, Nomie KJ, Li F, Wang MC, Shu X, et al. Enhancing intracellular accumulation and target engagement of PROTACs with reversible covalent chemistry. Nature Communications. 11: 4268. PMID 32848159 DOI: 10.1038/S41467-020-17997-6 |
0.593 |
|
| 2020 |
Jin S, Chen M, Chen X, Bueno C, Lu W, Schafer NP, Lin X, Onuchic JN, Wolynes PG. Protein Structure Prediction in CASP13 using AWSEM-Suite. Journal of Chemical Theory and Computation. PMID 32396727 DOI: 10.1021/Acs.Jctc.0C00188 |
0.562 |
|
| 2020 |
Shibata M, Lin X, Cheng RR, Yura K, Onuchic JN. Comparative Analysis of the Residue Co-Evolution of the DNA-Binding Response Regulator Subfamilies Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1439 |
0.472 |
|
| 2019 |
Lin X, Schafer NP, Lu W, Jin S, Chen X, Chen M, Onuchic JN, Wolynes PG. Forging tools for refining predicted protein structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 31000596 DOI: 10.1073/Pnas.1900778116 |
0.568 |
|
| 2019 |
Bhattacharya S, Lin X. Recent Advances in Computational Protocols Addressing Intrinsically Disordered Proteins. Biomolecules. 9. PMID 30979035 DOI: 10.3390/biom9040146 |
0.305 |
|
| 2019 |
Lin X, Kulkarni P, Bocci F, Schafer NP, Roy S, Tsai MY, He Y, Chen Y, Rajagopalan K, Mooney SM, Zeng Y, Weninger K, Grishaev A, Onuchic JN, Levine H, et al. Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. Biomolecules. 9. PMID 30813315 DOI: 10.3390/biom9020077 |
0.538 |
|
| 2018 |
Chen M, Lin X, Lu W, Schafer NP, Onuchic JN, Wolynes PG. Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force Fields. Journal of Chemical Theory and Computation. PMID 30240202 DOI: 10.1021/Acs.Jctc.8B00683 |
0.587 |
|
| 2018 |
Lin X, Noel JK, Wang Q, Ma J, Onuchic JN. Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill. Proceedings of the National Academy of Sciences of the United States of America. PMID 30012616 DOI: 10.1073/Pnas.1805442115 |
0.716 |
|
| 2018 |
Lin X, Roy S, Jolly MK, Bocci F, Schafer NP, Tsai MY, Chen Y, He Y, Grishaev A, Weninger K, Orban J, Kulkarni P, Rangarajan G, Levine H, Onuchic JN. PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer. Journal of Molecular Biology. PMID 29758263 DOI: 10.1016/J.Jmb.2018.05.011 |
0.566 |
|
| 2018 |
Lin X, Noel JK, Wang Q, Ma J, Onuchic JN. Atomistic Simulations Reveal a Hindered Transition of the B-Loop Domain of Influenza Hemagglutinin Biophysical Journal. 114: 232a. DOI: 10.1016/J.Bpj.2017.11.1292 |
0.691 |
|
| 2016 |
Chen M, Lin X, Lu W, Onuchic JN, Wolynes PG. Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins. The Journal of Physical Chemistry. B. PMID 27797194 DOI: 10.1021/Acs.Jpcb.6B09347 |
0.569 |
|
| 2016 |
Lin X, Noel JK, Wang Q, Ma J, Onuchic JN. Lowered pH Leads to Fusion Peptide Release and a Highly-Dynamic Intermediate of Influenza Hemagglutinin. The Journal of Physical Chemistry. B. PMID 27541202 DOI: 10.1021/Acs.Jpcb.6B06775 |
0.717 |
|
| 2016 |
Chen M, Lin X, Zheng W, Onuchic JN, Wolynes PG. Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model (AAWSEM). The Journal of Physical Chemistry. B. PMID 27148634 DOI: 10.1021/Acs.Jpcb.6B02451 |
0.536 |
|
| 2016 |
Lin X, Noel JK, Eddy NR, Ma J, Onuchic JN. Investigation of the pH Induced Conformational Rearrangement of Influenza Hemagglutinin Biophysical Journal. 110: 13a. DOI: 10.1016/J.Bpj.2015.11.126 |
0.721 |
|
| 2014 |
Lin X, Eddy NR, Noel JK, Whitford PC, Wang Q, Ma J, Onuchic JN. Order and disorder control the functional rearrangement of influenza hemagglutinin. Proceedings of the National Academy of Sciences of the United States of America. 111: 12049-54. PMID 25082896 DOI: 10.1073/Pnas.1412849111 |
0.728 |
|
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