| Year |
Citation |
Score |
| 2023 |
Jevit MJ, Castaneda C, Paria N, Das PJ, Miller D, Antczak DF, Kalbfleisch TS, Davis BW, Raudsepp T. Trio-binning of a hinny refines the comparative organization of the horse and donkey X chromosomes and reveals novel species-specific features. Scientific Reports. 13: 20180. PMID 37978222 DOI: 10.1038/s41598-023-47583-x |
0.51 |
|
| 2023 |
Meadows JRS, Kidd JM, Wang GD, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, ... ... Davis BW, et al. Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome Biology. 24: 255. PMID 37936157 DOI: 10.1186/s13059-023-03101-w |
0.417 |
|
| 2023 |
Bredemeyer KR, Hillier L, Harris AJ, Hughes GM, Foley NM, Lawless C, Carroll RA, Storer JM, Batzer MA, Rice ES, Davis BW, Raudsepp T, O'Brien SJ, Lyons LA, Warren WC, et al. Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution. Nature Genetics. 55: 1953-1963. PMID 37919451 DOI: 10.1038/s41588-023-01548-y |
0.724 |
|
| 2023 |
Hart SFM, Yonemitsu MA, Giersch RM, Garrett FES, Beal BF, Arriagada G, Davis BW, Ostrander EA, Goff SP, Metzger MJ. Centuries of genome instability and evolution in soft-shell clam, Mya arenaria, bivalve transmissible neoplasia. Nature Cancer. PMID 37783804 DOI: 10.1038/s43018-023-00643-7 |
0.356 |
|
| 2023 |
Momen M, Brauer K, Patterson MM, Sample SJ, Binversie EE, Davis BW, Cothran EG, Rosa GJM, Brounts SH, Muir P. Genetic architecture and polygenic risk score prediction of degenerative suspensory ligament desmitis (DSLD) in the Peruvian Horse. Frontiers in Genetics. 14: 1201628. PMID 37645058 DOI: 10.3389/fgene.2023.1201628 |
0.401 |
|
| 2023 |
Meadows JRS, Kidd JM, Wang GD, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, ... ... Davis BW, et al. Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture. Genome Biology. 24: 187. PMID 37582787 DOI: 10.1186/s13059-023-03023-7 |
0.431 |
|
| 2023 |
Stroupe S, Martone C, McCann B, Juras R, Kjöllerström HJ, Raudsepp T, Beard D, Davis BW, Derr JN. Chromosome-level reference genome for North American bison (Bison bison) and variant database aids in identifying albino mutation. G3 (Bethesda, Md.). PMID 37481261 DOI: 10.1093/g3journal/jkad156 |
0.503 |
|
| 2023 |
Ott JA, Mitchell C, Sheppard M, Deiss TC, Horton JMC, Haakenson JK, Huang R, Kelley AR, Davis BW, Derr JN, Smider VV, Criscitiello MF. Evolution of immunogenetic components encoding ultralong CDR H3. Immunogenetics. PMID 37084012 DOI: 10.1007/s00251-023-01305-9 |
0.38 |
|
| 2022 |
Binversie EE, Momen M, Rosa GJM, Davis BW, Muir P. Across-breed genetic investigation of canine hip dysplasia, elbow dysplasia, and anterior cruciate ligament rupture using whole-genome sequencing. Frontiers in Genetics. 13: 913354. PMID 36531249 DOI: 10.3389/fgene.2022.913354 |
0.353 |
|
| 2022 |
Castaneda C, Radovic L, Felkel S, Juras R, Davis BW, Cothran EG, Wallner B, Raudsepp T. Copy number variation (CNV) of horse Y chromosome genes in normal equine populations and in horses with abnormal sex development and subfertility; Relationship of CNVs with Y haplogroups. G3 (Bethesda, Md.). PMID 36227030 DOI: 10.1093/g3journal/jkac278 |
0.449 |
|
| 2022 |
Rubin CJ, Enbody ED, Dobreva MP, Abzhanov A, Davis BW, Lamichhaney S, Pettersson M, Sendell-Price AT, Sprehn CG, Valle CA, Vasco K, Wallerman O, Grant BR, Grant PR, Andersson L. Rapid adaptive radiation of Darwin's finches depends on ancestral genetic modules. Science Advances. 8: eabm5982. PMID 35857449 DOI: 10.1126/sciadv.abm5982 |
0.377 |
|
| 2022 |
Stroupe S, Forgacs D, Harris A, Derr JN, Davis BW. Genomic evaluation of hybridization in historic and modern North American Bison (Bison bison). Scientific Reports. 12: 6397. PMID 35430616 DOI: 10.1038/s41598-022-09828-z |
0.454 |
|
| 2022 |
Brackett NF, Davis BW, Adli M, Pomés A, Chapman MD. Evolutionary Biology and Gene Editing of Cat Allergen, Fel d 1. The Crispr Journal. 5: 213-223. PMID 35343817 DOI: 10.1089/crispr.2021.0101 |
0.322 |
|
| 2021 |
Li J, Lee MO, Chen J, Davis BW, Dorshorst BJ, Siegel PB, Inaba M, Jiang TX, Chuong CM, Andersson L. -acting mutation affecting transcription is underlying the within-feather pigmentation pattern in chickens. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34607956 DOI: 10.1073/pnas.2109363118 |
0.328 |
|
| 2021 |
Jenkins CA, Aguirre G, André C, Bannasch D, Becker D, Davis B, Drögemüller C, Ekenstedt K, Faller K, Forman O, Friedenberg S, Furrow E, Giger U, Hitte C, et al. Improving the resolution of canine genome-wide association studies using genotype imputation: A study of two breeds. Animal Genetics. PMID 34252218 DOI: 10.1111/age.13117 |
0.324 |
|
| 2021 |
Jagannathan V, Hitte C, Kidd JM, Masterson P, Murphy TD, Emery S, Davis B, Buckley RM, Liu YH, Zhang XQ, Leeb T, Zhang YP, Ostrander EA, Wang GD. Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome. Genes. 12. PMID 34070911 DOI: 10.3390/genes12060847 |
0.472 |
|
| 2021 |
Serres-Armero A, Davis BW, Povolotskaya IS, Morcillo-Suarez C, Plassais J, Juan D, Ostrander EA, Marques-Bonet T. Copy number variation underlies complex phenotypes in domestic dog breeds and other canids. Genome Research. PMID 33863806 DOI: 10.1101/gr.266049.120 |
0.455 |
|
| 2021 |
Therrien DA, Konganti K, Gill JJ, Davis BW, Hillhouse AE, Michalik J, Cross HR, Smith GC, Taylor TM, Riggs PK. Complete Whole Genome Sequences of Surrogate Strains and Comparison of Sequence Methods with Application to the Food Industry. Microorganisms. 9. PMID 33809423 DOI: 10.3390/microorganisms9030608 |
0.388 |
|
| 2021 |
Li J, Lee MO, Davis BW, Wu P, Hsieh Li SM, Chuong CM, Andersson L. The crest phenotype in domestic chicken is caused by a 197 bp duplication in the intron of HOXC10. G3 (Bethesda, Md.). 11. PMID 33704432 DOI: 10.1093/g3journal/jkaa048 |
0.365 |
|
| 2021 |
Jevit MJ, Davis BW, Castaneda C, Hillhouse A, Juras R, Trifonov VA, Tibary A, Pereira JC, Ferguson-Smith MA, Raudsepp T. An 8.22 Mb Assembly and Annotation of the Alpaca () Y Chromosome. Genes. 12. PMID 33467186 DOI: 10.3390/genes12010105 |
0.563 |
|
| 2020 |
Buckley RM, Davis BW, Brashear WA, Farias FHG, Kuroki K, Graves T, Hillier LW, Kremitzki M, Li G, Middleton RP, Minx P, Tomlinson C, Lyons LA, Murphy WJ, Warren WC. A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. Plos Genetics. 16: e1008926. PMID 33090996 DOI: 10.1371/journal.pgen.1008926 |
0.754 |
|
| 2020 |
Curry CJ, Davis BW, Bertola LD, White PA, Murphy WJ, Derr JN. Spatiotemporal Genetic Diversity of Lions Reveals the Influence of Habitat Fragmentation Across Africa. Molecular Biology and Evolution. PMID 32667997 DOI: 10.1093/Molbev/Msaa174 |
0.441 |
|
| 2020 |
Allen R, Ryan H, Davis BW, King C, Frantz L, Irving-Pease E, Barnett R, Linderholm A, Loog L, Haile J, Lebrasseur O, White M, Kitchener AC, Murphy WJ, Larson G. A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids. Proceedings. Biological Sciences. 287: 20200690. PMID 32486979 DOI: 10.1098/Rspb.2020.0690 |
0.44 |
|
| 2020 |
Li J, Lee M, Davis BW, Lamichhaney S, Dorshorst BJ, Siegel PB, Andersson L. Mutations upstream of the TBX5 and PITX1 transcription factor genes are associated with feathered legs in the domestic chicken. Molecular Biology and Evolution. PMID 32344431 DOI: 10.1093/Molbev/Msaa093 |
0.42 |
|
| 2020 |
Ghosh S, Davis BW, Rosengren M, Jevit MJ, Castaneda C, Arnold C, Jaxheimer J, Love CC, Varner DD, Lindgren G, Wade CM, Raudsepp T. Characterization of A Homozygous Deletion of Steroid Hormone Biosynthesis Genes in Horse Chromosome 29 as A Risk Factor for Disorders of Sex Development and Reproduction. Genes. 11. PMID 32120906 DOI: 10.3390/genes11030251 |
0.459 |
|
| 2019 |
Ostrander EA, Wang GD, Larson G, vonHoldt BM, Davis BW, Jagannathan V, Hitte C, Wayne RK, Zhang YP. Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health. National Science Review. 6: 810-824. PMID 31598383 DOI: 10.1093/Nsr/Nwz049 |
0.306 |
|
| 2019 |
Plassais J, Kim J, Davis BW, Karyadi DM, Hogan AN, Harris AC, Decker B, Parker HG, Ostrander EA. Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology. Nature Communications. 10: 1489. PMID 30940804 DOI: 10.1038/S41467-019-09373-W |
0.43 |
|
| 2018 |
Margres MJ, Ruiz-Aravena M, Hamede R, Jones ME, Lawrance MF, Hendricks SA, Patton A, Davis BW, Ostrander EA, McCallum H, Hohenlohe PA, Storfer A. The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii). Genome Biology and Evolution. PMID 30321343 DOI: 10.1093/Gbe/Evy229 |
0.329 |
|
| 2018 |
Janečka JE, Davis BW, Ghosh S, Paria N, Das PJ, Orlando L, Schubert M, Nielsen MK, Stout TAE, Brashear W, Li G, Johnson CD, Metz RP, Zadjali AMA, Love CC, et al. Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes. Nature Communications. 9: 2945. PMID 30054462 DOI: 10.1038/S41467-018-05290-6 |
0.774 |
|
| 2018 |
Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, et al. Applications and efficiencies of the first cat 63K DNA array. Scientific Reports. 8: 7024. PMID 29728693 DOI: 10.1038/S41598-018-25438-0 |
0.456 |
|
| 2018 |
Lee MO, Dobson L, Davis BW, Skow L, Derr J, Womack JE. Genomic Structure and Tissue Expression of the NK-lysin Gene Family in Bison. The Journal of Heredity. PMID 29718298 DOI: 10.1093/Jhered/Esy022 |
0.352 |
|
| 2017 |
Ostrander EA, Wayne RK, Freedman AH, Davis BW. Demographic history, selection and functional diversity of the canine genome. Nature Reviews. Genetics. PMID 28944780 DOI: 10.1038/Nrg.2017.67 |
0.409 |
|
| 2017 |
Parker HG, Dreger DL, Rimbault M, Davis BW, Mullen AB, Carpintero-Ramirez G, Ostrander EA. Genomic Analyses Reveal the Influence of Geographic Origin, Migration, and Hybridization on Modern Dog Breed Development. Cell Reports. 19: 697-708. PMID 28445722 DOI: 10.1016/J.Celrep.2017.03.079 |
0.319 |
|
| 2017 |
Plassais J, Rimbault M, Williams FJ, Davis BW, Schoenebeck JJ, Ostrander EA. Analysis of large versus small dogs reveals three genes on the canine X chromosome associated with body weight, muscling and back fat thickness. Plos Genetics. 13: e1006661. PMID 28257443 DOI: 10.1371/Journal.Pgen.1006661 |
0.384 |
|
| 2017 |
Kwon EM, Connelly JP, Hansen NF, Donovan FX, Winkler T, Davis BW, Alkadi H, Chandrasekharappa SC, Dunbar CE, Mullikin JC, Liu P. iPSCs and fibroblast subclones from the same fibroblast population contain comparable levels of sequence variations. Proceedings of the National Academy of Sciences of the United States of America. PMID 28167771 DOI: 10.1073/pnas.1616035114 |
0.372 |
|
| 2017 |
Parker HG, Harris A, Dreger DL, Davis BW, Ostrander EA. The bald and the beautiful: hairlessness in domestic dog breeds. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 27994129 DOI: 10.1098/Rstb.2015.0488 |
0.375 |
|
| 2016 |
Dreger DL, Rimbault M, Davis BW, Bhatnagar A, Parker HG, Ostrander EA. Whole genome sequence, SNP chips and pedigree structure: building demographic profiles in domestic dog breeds to optimize genetic trait mapping. Disease Models & Mechanisms. PMID 27874836 DOI: 10.1242/Dmm.027037 |
0.427 |
|
| 2016 |
Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, et al. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics. 12: e1005851. PMID 26943675 DOI: 10.1371/Journal.Pgen.1005851 |
0.34 |
|
| 2015 |
Li G, Davis B, Eizirik E, Murphy W. Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae). Genome Research. PMID 26518481 DOI: 10.1101/Gr.186668.114 |
0.668 |
|
| 2015 |
Decker B, Davis BW, Rimbault M, Long AH, Karlins E, Parker HG, Jagannathan V, Reiman R, Drögemüller C, Corneveaux JJ, Chapman ES, Trent JM, Leeb T, Huentelman MJ, Wayne RK, et al. Comparison against 186 canid whole genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor. Genome Research. PMID 26232412 DOI: 10.1101/Gr.190314.115 |
0.388 |
|
| 2015 |
Davis BW, Seabury CM, Brashear WA, Li G, Roelke-Parker M, Murphy WJ. Mechanisms Underlying Mammalian Hybrid Sterility in Two Feline Interspecies Models. Molecular Biology and Evolution. PMID 26006188 DOI: 10.1093/Molbev/Msv124 |
0.756 |
|
| 2014 |
Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111 |
0.693 |
|
| 2013 |
Li G, Davis BW, Raudsepp T, Pearks Wilkerson AJ, Mason VC, Ferguson-Smith M, O'Brien PC, Waters PD, Murphy WJ. Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution. Genome Research. 23: 1486-95. PMID 23788650 DOI: 10.1101/Gr.154286.112 |
0.74 |
|
| 2011 |
Jane?ka JE, Tewes ME, Laack LL, Caso A, Grassman LI, Haines AM, Shindle DB, Davis BW, Murphy WJ, Honeycutt RL. Reduced genetic diversity and isolation of remnant ocelot populations occupying a severely fragmented landscape in southern Texas Animal Conservation. 14: 608-619. DOI: 10.1111/J.1469-1795.2011.00475.X |
0.393 |
|
| 2010 |
Davis BW, Li G, Murphy WJ. Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae). Molecular Phylogenetics and Evolution. 56: 64-76. PMID 20138224 DOI: 10.1016/J.Ympev.2010.01.036 |
0.569 |
|
| 2009 |
Davis BW, Raudsepp T, Pearks Wilkerson AJ, Agarwala R, Schäffer AA, Houck M, Chowdhary BP, Murphy WJ. A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae. Genomics. 93: 299-304. PMID 18951970 DOI: 10.1016/J.Ygeno.2008.09.010 |
0.617 |
|
| 2007 |
Murphy WJ, Davis B, David VA, Agarwala R, Schäffer AA, Pearks Wilkerson AJ, Neelam B, O'Brien SJ, Menotti-Raymond M. A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes. Genomics. 89: 189-96. PMID 16997530 DOI: 10.1016/J.Ygeno.2006.08.007 |
0.662 |
|
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