63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kryštůfek R, Šácha P, Starková J, Brynda J, Hradilek M, Tloušt'ová E, Grzymska J, Rut W, Boucher MJ, Drąg M, Majer P, Hájek M, Řezáčová P, Madhani HD, Craik CS, ... Konvalinka J, et al. Re-emerging Aspartic Protease Targets: Examining Major Aspartyl Peptidase 1 as a Target for Antifungal Drug Discovery. Journal of Medicinal Chemistry. 64: 6706-6719. PMID 34006103 DOI: 10.1021/acs.jmedchem.0c02177  0.305
2019 Majerová T, Novotný P, Krýsová E, Konvalinka J. Exploiting the unique features of Zika and Dengue proteases for inhibitor design. Biochimie. 166: 132-141. PMID 31077760 DOI: 10.1016/j.biochi.2019.05.004  0.343
2019 Vorlova B, Knedlik T, Tykvart J, Konvalinka J. GCPII and its close homolog GCPIII: from a neuropeptidase to a cancer marker and beyond. Frontiers in Bioscience (Landmark Edition). 24: 648-687. PMID 30844704  0.303
2018 Humpolíčková J, Weber J, Starková J, Mašínová E, Günterová J, Flaisigová I, Konvalinka J, Majerová T. Inhibition of the precursor and mature forms of HIV-1 protease as a tool for drug evaluation. Scientific Reports. 8: 10438. PMID 29992979 DOI: 10.1038/s41598-018-28638-w  0.34
2017 Tretyachenko V, Vymětal J, Bednárová L, Kopecký V, Hofbauerová K, Jindrová H, Hubálek M, Souček R, Konvalinka J, Vondrášek J, Hlouchová K. Random protein sequences can form defined secondary structures and are well-tolerated in vivo. Scientific Reports. 7: 15449. PMID 29133927 DOI: 10.1038/s41598-017-15635-8  0.682
2017 Knedlík T, Vorlová B, Navrátil V, Tykvart J, Sedlák F, Vaculín Š, Franěk M, Šácha P, Konvalinka J. Mouse glutamate carboxypeptidase II (GCPII) has a similar enzyme activity and inhibition profile but a different tissue distribution to human GCPII. Febs Open Bio. 7: 1362-1378. PMID 28904865 DOI: 10.1002/2211-5463.12276  0.312
2016 Hanne J, Göttfert F, Schimer J, Anders-Össwein M, Konvalinka J, Engelhardt J, Müller B, Hell SW, Kräusslich HG. Stimulated Emission Depletion Nanoscopy Reveals Time-Course of Human Immunodeficiency Virus Proteolytic Maturation. Acs Nano. PMID 27517329 DOI: 10.1021/Acsnano.6B03850  0.566
2016 Albiñana CB, Machara A, Řezáčová P, Pachl P, Konvalinka J, Kožíšek M. Kinetic, thermodynamic and structural analysis of tamiphosphor binding to neuraminidase of H1N1 (2009) pandemic influenza. European Journal of Medicinal Chemistry. 121: 100-109. PMID 27236066 DOI: 10.1016/J.Ejmech.2016.05.016  0.3
2016 Navrátil M, Tykvart J, Schimer J, Pachl P, Navrátil V, Rokob TA, Hlouchová K, Rulíšek L, Konvalinka J. Comparison of human glutamate carboxypeptidases II and III reveals their divergent substrate specificities. The Febs Journal. PMID 27208881 DOI: 10.1111/Febs.13761  0.745
2015 Tykvart J, Schimer J, Jančařík A, Bařinková J, Navrátil V, Starková J, Šrámková K, Konvalinka J, Majer P, Šácha P. Design of highly potent urea-based, exosite-binding inhibitors selective for glutamate carboxypeptidase II. Journal of Medicinal Chemistry. 58: 4357-63. PMID 25923815 DOI: 10.1021/acs.jmedchem.5b00278  0.357
2015 Konvalinka J, Kräusslich HG, Müller B. Retroviral proteases and their roles in virion maturation. Virology. 479: 403-17. PMID 25816761 DOI: 10.1016/j.virol.2015.03.021  0.611
2015 Tykvart J, Bařinka C, Svoboda M, Navrátil V, Souček R, Hubálek M, Hradilek M, Šácha P, Lubkowski J, Konvalinka J. Structural and biochemical characterization of a novel aminopeptidase from human intestine. The Journal of Biological Chemistry. 290: 11321-36. PMID 25752612 DOI: 10.1074/jbc.M114.628149  0.323
2015 Schimer J, Pávová M, Anders M, Pachl P, Šácha P, Cígler P, Weber J, Majer P, ?ezá?ová P, Kräusslich HG, Müller B, Konvalinka J. Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor. Nature Communications. 6: 6461. PMID 25751579 DOI: 10.1038/ncomms7461  0.58
2015 Vorlová B, Nachtigallová D, Jirásková-Vaníčková J, Ajani H, Jansa P, Rezáč J, Fanfrlík J, Otyepka M, Hobza P, Konvalinka J, Lepšík M. Malonate-based inhibitors of mammalian serine racemase: kinetic characterization and structure-based computational study. European Journal of Medicinal Chemistry. 89: 189-97. PMID 25462239 DOI: 10.1016/J.Ejmech.2014.10.043  0.33
2014 Mattei S, Anders M, Konvalinka J, Kräusslich HG, Briggs JA, Müller B. Induced maturation of human immunodeficiency virus. Journal of Virology. 88: 13722-31. PMID 25231305 DOI: 10.1128/JVI.02271-14  0.568
2014 Tykvart J, Schimer J, Bařinková J, Pachl P, Poštová-Slavětínská L, Majer P, Konvalinka J, Šácha P. Rational design of urea-based glutamate carboxypeptidase II (GCPII) inhibitors as versatile tools for specific drug targeting and delivery. Bioorganic & Medicinal Chemistry. 22: 4099-108. PMID 24954515 DOI: 10.1016/j.bmc.2014.05.061  0.305
2014 Navrátil M, Ptáček J, Šácha P, Starková J, Lubkowski J, Bařinka C, Konvalinka J. Structural and biochemical characterization of the folyl-poly-γ-l-glutamate hydrolyzing activity of human glutamate carboxypeptidase II. The Febs Journal. 281: 3228-42. PMID 24863754 DOI: 10.1111/febs.12857  0.357
2014 Grantz Šašková K, Kozíšek M, Stray K, de Jong D, Rezáová P, Brynda J, van Maarseveen NM, Nijhuis M, Cihlár T, Konvalinka J. GS-8374, a prototype phosphonate-containing inhibitor of HIV-1 protease, effectively inhibits protease mutants with amino acid insertions. Journal of Virology. 88: 3586-90. PMID 24371077 DOI: 10.1128/JVI.02688-13  0.328
2013 Pokorná J, Heyda J, Konvalinka J. Ion specific effects of alkali cations on the catalytic activity of HIV-1 protease. Faraday Discussions. 160: 359-70; discussion 3. PMID 23795510 DOI: 10.1039/C2Fd20094E  0.323
2012 Schimer J, Cígler P, Veselý J, Grantz Šašková K, Lepšík M, Brynda J, Rezáčová P, Kožíšek M, Císařová I, Oberwinkler H, Kraeusslich HG, Konvalinka J. Structure-aided design of novel inhibitors of HIV protease based on a benzodiazepine scaffold. Journal of Medicinal Chemistry. 55: 10130-5. PMID 23050738 DOI: 10.1021/jm301249q  0.3
2012 Kozísek M, Henke S, Sasková KG, Jacobs GB, Schuch A, Buchholz B, Müller V, Kräusslich HG, Rezácová P, Konvalinka J, Bodem J. Mutations in HIV-1 gag and pol compensate for the loss of viral fitness caused by a highly mutated protease. Antimicrobial Agents and Chemotherapy. 56: 4320-30. PMID 22644035 DOI: 10.1128/AAC.00465-12  0.581
2011 Plechanovová A, Byun Y, Alquicer G, Skultétyová L, Mlčochová P, Němcová A, Kim HJ, Navrátil M, Mease R, Lubkowski J, Pomper M, Konvalinka J, Rulíšek L, Bařinka C. Novel substrate-based inhibitors of human glutamate carboxypeptidase II with enhanced lipophilicity. Journal of Medicinal Chemistry. 54: 7535-46. PMID 21923190 DOI: 10.1021/Jm200807M  0.358
2011 Fun A, van Maarseveen NM, Pokorná J, Maas RE, Schipper PJ, Konvalinka J, Nijhuis M. HIV-1 protease inhibitor mutations affect the development of HIV-1 resistance to the maturation inhibitor bevirimat. Retrovirology. 8: 70. PMID 21864346 DOI: 10.1186/1742-4690-8-70  0.314
2011 Jirásková-Vaníčková J, Ettrich R, Vorlová B, Hoffman HE, Lepšík M, Jansa P, Konvalinka J. Inhibition of human serine racemase, an emerging target for medicinal chemistry. Current Drug Targets. 12: 1037-55. PMID 21291385  0.305
2010 Hoffman HE, Jirásková J, Zvelebil M, Konvalinka J. Random mutagenesis of human serine racemase reveals residues important for the enzymatic activity Collection of Czechoslovak Chemical Communications. 75: 59-79. DOI: 10.1135/CCCC2010003  0.345
2009 Rezácová P, Pokorná J, Brynda J, Kozísek M, Cígler P, Lepsík M, Fanfrlík J, Rezác J, Grantz Sasková K, Sieglová I, Plesek J, Sícha V, Grüner B, Oberwinkler H, Sedlácek' J, ... ... Konvalinka J, et al. Design of HIV protease inhibitors based on inorganic polyhedral metallacarboranes. Journal of Medicinal Chemistry. 52: 7132-41. PMID 19874035 DOI: 10.1021/Jm9011388  0.557
2009 Hoffman HE, Jirásková J, Cígler P, Sanda M, Schraml J, Konvalinka J. Hydroxamic acids as a novel family of serine racemase inhibitors: mechanistic analysis reveals different modes of interaction with the pyridoxal-5'-phosphate cofactor. Journal of Medicinal Chemistry. 52: 6032-41. PMID 19791805 DOI: 10.1021/jm900775q  0.34
2009 Hlouchova K, Barinka C, Konvalinka J, Lubkowski J. Structural insight into the evolutionary and pharmacologic homology of glutamate carboxypeptidases II and III. The Febs Journal. 276: 4448-62. PMID 19678840 DOI: 10.1111/j.1742-4658.2009.07152.x  0.754
2009 Sasková KG, Kozísek M, Rezácová P, Brynda J, Yashina T, Kagan RM, Konvalinka J. Molecular characterization of clinical isolates of human immunodeficiency virus resistant to the protease inhibitor darunavir. Journal of Virology. 83: 8810-8. PMID 19535439 DOI: 10.1128/JVI.00451-09  0.335
2009 Klusak V, Barinka C, Plechanovova A, Mlcochova P, Konvalinka J, Rulisek L, Lubkowski J. Reaction mechanism of glutamate carboxypeptidase II revealed by mutagenesis, X-ray crystallography, and computational methods. Biochemistry. 48: 4126-4138. PMID 19301871 DOI: 10.1021/Bi900220S  0.334
2008 Kozísek M, Sasková KG, Rezácová P, Brynda J, van Maarseveen NM, De Jong D, Boucher CA, Kagan RM, Nijhuis M, Konvalinka J. Ninety-nine is not enough: molecular characterization of inhibitor-resistant human immunodeficiency virus type 1 protease mutants with insertions in the flap region. Journal of Virology. 82: 5869-78. PMID 18400858 DOI: 10.1128/Jvi.02325-07  0.344
2008 Barinka C, Hlouchova K, Rovenska M, Majer P, Dauter M, Hin N, Ko YS, Tsukamoto T, Slusher BS, Konvalinka J, Lubkowski J. Structural basis of interactions between human glutamate carboxypeptidase II and its substrate analogs. Journal of Molecular Biology. 376: 1438-50. PMID 18234225 DOI: 10.1016/j.jmb.2007.12.066  0.751
2008 Rovenská M, Hlouchová K, Sácha P, Mlcochová P, Horák V, Zámecník J, Barinka C, Konvalinka J. Tissue expression and enzymologic characterization of human prostate specific membrane antigen and its rat and pig orthologs. The Prostate. 68: 171-82. PMID 18076021 DOI: 10.1002/pros.20676  0.695
2007 Kozísek M, Bray J, Rezácová P, Sasková K, Brynda J, Pokorná J, Mammano F, Rulísek L, Konvalinka J. Molecular analysis of the HIV-1 resistance development: enzymatic activities, crystal structures, and thermodynamics of nelfinavir-resistant HIV protease mutants. Journal of Molecular Biology. 374: 1005-16. PMID 17977555 DOI: 10.1016/j.jmb.2007.09.083  0.325
2007 Mlcochová P, Plechanovová A, Barinka C, Mahadevan D, Saldanha JW, Rulísek L, Konvalinka J. Mapping of the active site of glutamate carboxypeptidase II by site-directed mutagenesis. The Febs Journal. 274: 4731-41. PMID 17714508 DOI: 10.1111/J.1742-4658.2007.06021.X  0.413
2007 Barinka C, Rovenská M, Mlcochová P, Hlouchová K, Plechanovová A, Majer P, Tsukamoto T, Slusher BS, Konvalinka J, Lubkowski J. Structural insight into the pharmacophore pocket of human glutamate carboxypeptidase II. Journal of Medicinal Chemistry. 50: 3267-73. PMID 17567119 DOI: 10.1021/jm070133w  0.749
2007 Nijhuis M, van Maarseveen NM, Lastere S, Schipper P, Coakley E, Glass B, Rovenska M, de Jong D, Chappey C, Goedegebuure IW, Heilek-Snyder G, Dulude D, Cammack N, Brakier-Gingras L, Konvalinka J, et al. A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism. Plos Medicine. 4: e36. PMID 17227139 DOI: 10.1371/Journal.Pmed.0040036  0.55
2006 Hlouchová K, Bařinka C, Klusák V, Šácha P, Mlčochová P, Majer P, Rulíšek L, Konvalinka J. Biochemical characterization of human glutamate carboxypeptidase III. Journal of Neurochemistry. 101: 682-696. PMID 17241121 DOI: 10.1111/J.1471-4159.2006.04341.X  0.753
2006 Skalova T, Dohnalek J, Duskova J, Petrokova H, Hradílek M, Soucek M, Konvalinka J, Hasek J. HIV-1 protease mutations and inhibitor modifications monitored on a series of complexes. Structural basis for the effect of the A71V mutation on the active site. Journal of Medicinal Chemistry. 49: 5777-84. PMID 16970402 DOI: 10.1021/jm0605583  0.337
2006 Koval D, Jirásková J, Strísovský K, Konvalinka J, Kasicka V. Capillary electrophoresis method for determination of D-serine and its application for monitoring of serine racemase activity. Electrophoresis. 27: 2558-66. PMID 16721908 DOI: 10.1002/elps.200500946  0.671
2006 Dusková J, Dohnálek J, Skálová T, Petroková H, Vondrácková E, Hradílek M, Konvalinka J, Soucek M, Brynda J, Fábry M, Sedlácek J, Hasek J. On the role of the R configuration of the reaction-intermediate isostere in HIV-1 protease-inhibitor binding: X-ray structure at 2.0 A resolution. Acta Crystallographica. Section D, Biological Crystallography. 62: 489-97. PMID 16627941 DOI: 10.1107/S0907444906006718  0.339
2006 Mesters JR, Barinka C, Li W, Tsukamoto T, Majer P, Slusher BS, Konvalinka J, Hilgenfeld R. Structure of glutamate carboxypeptidase II, a drug target in neuronal damage and prostate cancer. The Embo Journal. 25: 1375-84. PMID 16467855 DOI: 10.1038/sj.emboj.7600969  0.38
2005 Cígler P, Kozísek M, Rezácová P, Brynda J, Otwinowski Z, Pokorná J, Plesek J, Grüner B, Dolecková-Maresová L, Mása M, Sedlácek J, Bodem J, Kräusslich HG, Král V, Konvalinka J. From nonpeptide toward noncarbon protease inhibitors: metallacarboranes as specific and potent inhibitors of HIV protease. Proceedings of the National Academy of Sciences of the United States of America. 102: 15394-9. PMID 16227435 DOI: 10.1073/pnas.0507577102  0.606
2005 Strísovský K, Jirásková J, Mikulová A, Rulísek L, Konvalinka J. Dual substrate and reaction specificity in mouse serine racemase: identification of high-affinity dicarboxylate substrate and inhibitors and analysis of the beta-eliminase activity. Biochemistry. 44: 13091-100. PMID 16185077 DOI: 10.1021/bi051201o  0.681
2005 Caffrey CR, Placha L, Barinka C, Hradilek M, Dostál J, Sajid M, McKerrow JH, Majer P, Konvalinka J, Vondráŝek J. Homology modeling and SAR analysis of Schistosoma japonicum cathepsin D (SjCD) with statin inhibitors identify a unique active site steric barrier with potential for the design of specific inhibitors Biological Chemistry. 386: 339-349. PMID 15899696 DOI: 10.1515/Bc.2005.041  0.307
2004 Petroková H, Dusková J, Dohnálek J, Skálová T, Vondrácková-Buchtelová E, Soucek M, Konvalinka J, Brynda J, Fábry M, Sedlácek J, Hasek J. Role of hydroxyl group and R/S configuration of isostere in binding properties of HIV-1 protease inhibitors. European Journal of Biochemistry. 271: 4451-61. PMID 15560786 DOI: 10.1111/j.1432-1033.2004.04384.x  0.326
2004 Svec M, Bauerová H, Pichová I, Konvalinka J, Strísovský K. Proteinases of betaretroviruses bind single-stranded nucleic acids through a novel interaction module, the G-patch. Febs Letters. 576: 271-6. PMID 15474050 DOI: 10.1016/j.febslet.2004.09.010  0.663
2004 Barinka C, Mlcochová P, Sácha P, Hilgert I, Majer P, Slusher BS, Horejsí V, Konvalinka J. Amino acids at the N- and C-termini of human glutamate carboxypeptidase II are required for enzymatic activity and proper folding. European Journal of Biochemistry. 271: 2782-90. PMID 15206943 DOI: 10.1111/j.1432-1033.2004.04209.x  0.321
2004 Barinka C, Sácha P, Sklenár J, Man P, Bezouska K, Slusher BS, Konvalinka J. Identification of the N-glycosylation sites on glutamate carboxypeptidase II necessary for proteolytic activity. Protein Science : a Publication of the Protein Society. 13: 1627-35. PMID 15152093 DOI: 10.1110/ps.04622104  0.316
2004 Brynda J, Rezacova P, Fabry M, Horejsi M, Stouracova R, Sedlacek J, Soucek M, Hradilek M, Lepsik M, Konvalinka J. A phenylnorstatine inhibitor binding to HIV-1 protease: geometry, protonation, and subsite-pocket interactions analyzed at atomic resolution. Journal of Medicinal Chemistry. 47: 2030-6. PMID 15056001 DOI: 10.1021/jm031105q  0.313
2004 Kožíšek M, Prejdová J, Souček M, Machala L, Staňková M, Linka M, Brůčková M, Konvalinka J. Characterisation of Mutated Proteinases Derived from HIV-Positive Patients: Enzyme Activity, Vitality and Inhibition Collection of Czechoslovak Chemical Communications. 69: 703-714. DOI: 10.1135/CCCC20040703  0.316
2003 Ingr M, Uhlíková T, Strísovský K, Majerová E, Konvalinka J. Kinetics of the dimerization of retroviral proteases: the "fireman's grip" and dimerization. Protein Science : a Publication of the Protein Society. 12: 2173-82. PMID 14500875 DOI: 10.1110/ps.03171903  0.705
2003 Strísovský K, Jirásková J, Barinka C, Majer P, Rojas C, Slusher BS, Konvalinka J. Mouse brain serine racemase catalyzes specific elimination of L-serine to pyruvate. Febs Letters. 535: 44-8. PMID 12560076 DOI: 10.1016/s0014-5793(02)03855-3  0.691
2002 Weber J, Mesters JR, Lepsík M, Prejdová J, Svec M, Sponarová J, Mlcochová P, Skalická K, Strísovský K, Uhlíková T, Soucek M, Machala L, Stanková M, Vondrásek J, Klimkait T, ... ... Konvalinka J, et al. Unusual binding mode of an HIV-1 protease inhibitor explains its potency against multi-drug-resistant virus strains. Journal of Molecular Biology. 324: 739-54. PMID 12460574  0.681
2002 Dohnálek J, Hasek J, Dusková J, Petroková H, Hradilek M, Soucek M, Konvalinka J, Brynda J, Sedlácek J, Fábry M. Hydroxyethylamine isostere of an HIV-1 protease inhibitor prefers its amine to the hydroxy group in binding to catalytic aspartates. A synchrotron study of HIV-1 protease in complex with a peptidomimetic inhibitor. Journal of Medicinal Chemistry. 45: 1432-8. PMID 11906284 DOI: 10.1021/jm010979e  0.329
2002 Barinka C, Rinnová M, Sácha P, Rojas C, Majer P, Slusher BS, Konvalinka J. Substrate specificity, inhibition and enzymological analysis of recombinant human glutamate carboxypeptidase II. Journal of Neurochemistry. 80: 477-87. PMID 11905994 DOI: 10.1046/j.0022-3042.2001.00715.x  0.37
2002 Strísovský K, Smrz D, Fehrmann F, Kräusslich HG, Konvalinka J. The murine endogenous retrovirus MIA14 encodes an active aspartic proteinase that is functionally similar to proteinases from D-type retroviruses. Archives of Biochemistry and Biophysics. 398: 261-8. PMID 11831858 DOI: 10.1006/abbi.2001.2728  0.73
2001 Strisovsky K, Tessmer U, Langner J, Konvalinka J, Kräusslich HG. Systematic mutational analysis of the active-site threonine of HIV-1 proteinase: rethinking the "fireman's grip" hypothesis. Protein Science : a Publication of the Protein Society. 9: 1631-41. PMID 11045610 DOI: 10.1110/PS.9.9.1631  0.314
1998 Konvalinka J, Litera J, Weber J, Vondrásek J, Hradílek M, Soucek M, Pichová I, Majer P, Strop P, Sedlácek J, Heuser AM, Kottler H, Kräusslich HG. Configurations of diastereomeric hydroxyethylene isosteres strongly affect biological activities of a series of specific inhibitors of human-immunodeficiency-virus proteinase. European Journal of Biochemistry. 250: 559-66. PMID 9428710 DOI: 10.1111/J.1432-1033.1997.0559A.X  0.368
1996 Uhlíková T, Konvalinka J, Pichová I, Soucek M, Kräusslich HG, Vondrásek J. A modular approach to HIV-1 proteinase inhibitor design. Biochemical and Biophysical Research Communications. 222: 38-43. PMID 8630071 DOI: 10.1006/BBRC.1996.0694  0.318
1995 Konvalinka J, Litterst MA, Welker R, Kottler H, Rippmann F, Heuser AM, Kräusslich HG. An active-site mutation in the human immunodeficiency virus type 1 proteinase (PR) causes reduced PR activity and loss of PR-mediated cytotoxicity without apparent effect on virus maturation and infectivity. Journal of Virology. 69: 7180-6. PMID 7474139 DOI: 10.1128/jvi.69.11.7180-7186.1995  0.314
1992 Jupp RA, Richards AD, Phylip LH, Kay J, Konvalinka J, Strop P, Kostka V, Scarborough PE, Farmerie WG, Dunn BM. Substrate cleavage by HIV-1 proteinase. Advances in Experimental Medicine and Biology. 306: 461-7. PMID 1812743 DOI: 10.1007/978-1-4684-6012-4_59  0.388
1992 Griffiths JT, Phylip LH, Konvalinka J, Strop P, Gustchina A, Wlodawer A, Davenport RJ, Briggs R, Dunn BM, Kay J. Different requirements for productive interaction between the active site of HIV-1 proteinase and substrates containing -hydrophobic*hydrophobic- or -aromatic*pro- cleavage sites Biochemistry. 31: 5193-5200. PMID 1606143 DOI: 10.1021/Bi00137A015  0.314
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