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Carles Pons - Publications

Affiliations: 
2005-2011 Barcelona Supercomputing Center, Barcelona, Catalunya, Spain 
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Coté AG, Daley M, Deimling S, Desbuleux A, ... ... Pons C, et al. A reference map of the human binary protein interactome. Nature. 580: 402-408. PMID 32296183 DOI: 10.1038/S41586-020-2188-X  0.33
2017 Rizzolo K, Huen J, Kumar A, Phanse S, Vlasblom J, Kakihara Y, Zeineddine HA, Minic Z, Snider J, Wang W, Pons C, Seraphim TV, Boczek EE, Alberti S, Costanzo M, et al. Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping. Cell Reports. 20: 2735-2748. PMID 28903051 DOI: 10.1016/J.Celrep.2017.08.074  0.301
2015 Jiménez-García B, Pons C, Svergun DI, Bernadó P, Fernández-Recio J. pyDockSAXS: protein-protein complex structure by SAXS and computational docking. Nucleic Acids Research. 43: W356-61. PMID 25897115 DOI: 10.1093/Nar/Gkv368  0.544
2013 Emperador A, Solernou A, Sfriso P, Pons C, Gelpi JL, Fernandez-Recio J, Orozco M. Efficient Relaxation of Protein-Protein Interfaces by Discrete Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 9: 1222-9. PMID 26588765 DOI: 10.1021/ct301039e  0.826
2013 Pons C, Fenwick RB, Esteban-Martín S, Salvatella X, Fernandez-Recio J. Validated Conformational Ensembles Are Key for the Successful Prediction of Protein Complexes. Journal of Chemical Theory and Computation. 9: 1830-7. PMID 26587639 DOI: 10.1021/ct300990h  0.728
2013 Pallara C, Jiménez-García B, Pérez-Cano L, Romero-Durana M, Solernou A, Grosdidier S, Pons C, Moal IH, Fernandez-Recio J. Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges. Proteins. 81: 2192-200. PMID 23934865 DOI: 10.1002/prot.24387  0.657
2013 Jiménez-García B, Pons C, Fernández-Recio J. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring. Bioinformatics (Oxford, England). 29: 1698-9. PMID 23661696 DOI: 10.1093/bioinformatics/btt262  0.723
2013 Pérez-Cano L, Solernou A, Pons C, Fernández-Recio J. Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 293-301. PMID 19908381 DOI: 10.1142/9789814295291_0031  0.767
2012 Pons C, Jiménez-González D, González-Álvarez C, Servat H, Cabrera-Benítez D, Aguilar X, Fernández-Recio J. Cell-Dock: high-performance protein-protein docking. Bioinformatics (Oxford, England). 28: 2394-6. PMID 22815362 DOI: 10.1093/bioinformatics/bts454  0.628
2012 Masone D, Vaca IC, Pons C, Recio JF, Guallar V. H-bond network optimization in protein-protein complexes: are all-atom force field scores enough? Proteins. 80: 818-24. PMID 22113891 DOI: 10.1002/Prot.23239  0.33
2011 Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, ... ... Pons C, et al. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of Molecular Biology. 414: 289-302. PMID 22001016 DOI: 10.1016/J.Jmb.2011.09.031  0.779
2011 Pons C, Glaser F, Fernandez-Recio J. Prediction of protein-binding areas by small-world residue networks and application to docking. Bmc Bioinformatics. 12: 378. PMID 21943333 DOI: 10.1186/1471-2105-12-378  0.732
2011 Wass MN, Fuentes G, Pons C, Pazos F, Valencia A. Towards the prediction of protein interaction partners using physical docking. Molecular Systems Biology. 7: 469. PMID 21326236 DOI: 10.1038/Msb.2011.3  0.515
2011 Pons C, Talavera D, de la Cruz X, Orozco M, Fernandez-Recio J. Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking. Journal of Chemical Information and Modeling. 51: 370-7. PMID 21214199 DOI: 10.1021/Ci100353E  0.733
2011 Pons C, Solernou A, Perez-Cano L, Grosdidier S, Fernandez-Recio J. Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding. Proteins. 78: 3182-8. PMID 20602351 DOI: 10.1002/prot.22773  0.725
2010 Pons C, D'Abramo M, Svergun DI, Orozco M, Bernadó P, Fernández-Recio J. Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data. Journal of Molecular Biology. 403: 217-30. PMID 20804770 DOI: 10.1016/J.Jmb.2010.08.029  0.702
2010 Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J. Present and future challenges and limitations in protein-protein docking. Proteins. 78: 95-108. PMID 19731373 DOI: 10.1002/prot.22564  0.767
2009 D'Abramo M, Meyer T, Bernadó P, Pons C, Recio JF, Orozco M. On the Use of low-resolution Data to Improve Structure Prediction of Proteins and Protein Complexes. Journal of Chemical Theory and Computation. 5: 3129-37. PMID 26609992 DOI: 10.1021/Ct900305M  0.371
2009 Mosca R, Pons C, Fernández-Recio J, Aloy P. Pushing structural information into the yeast interactome by high-throughput protein docking experiments. Plos Computational Biology. 5: e1000490. PMID 19714207 DOI: 10.1371/Journal.Pcbi.1000490  0.714
2009 Garzon JI, Lopéz-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P. FRODOCK: a new approach for fast rotational protein-protein docking. Bioinformatics (Oxford, England). 25: 2544-51. PMID 19620099 DOI: 10.1093/Bioinformatics/Btp447  0.775
2008 Izarzugaza JM, Juan D, Pons C, Pazos F, Valencia A. Enhancing the prediction of protein pairings between interacting families using orthology information. Bmc Bioinformatics. 9: 35. PMID 18215279 DOI: 10.1186/1471-2105-9-35  0.348
2008 Grosdidier S, Pons C, Solernou A, Fernández-Recio J. Prediction and scoring of docking poses with pyDock. Proteins. 69: 852-8. PMID 17876821 DOI: 10.1002/prot.21796  0.754
2006 Izarzugaza JM, Juan D, Pons C, Ranea JA, Valencia A, Pazos F. TSEMA: interactive prediction of protein pairings between interacting families. Nucleic Acids Research. 34: W315-9. PMID 16845017 DOI: 10.1093/Nar/Gkl112  0.329
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