| Year |
Citation |
Score |
| 2013 |
Itoh Y, Bröcker MJ, Sekine S, Hammond G, Suetsugu S, Söll D, Yokoyama S. Decameric SelA•tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation. Science (New York, N.Y.). 340: 75-8. PMID 23559248 DOI: 10.1126/Science.1229521 |
0.313 |
|
| 2012 |
Kawahara-Kobayashi A, Masuda A, Araiso Y, Sakai Y, Kohda A, Uchiyama M, Asami S, Matsuda T, Ishitani R, Dohmae N, Yokoyama S, Kigawa T, Nureki O, Kiga D. Simplification of the genetic code: restricted diversity of genetically encoded amino acids. Nucleic Acids Research. 40: 10576-84. PMID 22909996 DOI: 10.1093/nar/gks786 |
0.413 |
|
| 2008 |
Ishitani R, Yokoyama S, Nureki O. Structure, dynamics, and function of RNA modification enzymes. Current Opinion in Structural Biology. 18: 330-9. PMID 18539024 DOI: 10.1016/j.sbi.2008.05.003 |
0.426 |
|
| 2007 |
Fukunaga R, Yokoyama S. Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus. Journal of Molecular Biology. 370: 128-41. PMID 17512006 DOI: 10.1016/J.Jmb.2007.04.050 |
0.305 |
|
| 2006 |
Yanagisawa T, Ishii R, Fukunaga R, Nureki O, Yokoyama S. Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 1031-3. PMID 17012805 DOI: 10.1107/S1744309106036700 |
0.486 |
|
| 2006 |
Sasaki HM, Sekine S, Sengoku T, Fukunaga R, Hattori M, Utsunomiya Y, Kuroishi C, Kuramitsu S, Shirouzu M, Yokoyama S. Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 103: 14744-9. PMID 17003130 DOI: 10.1073/Pnas.0603182103 |
0.652 |
|
| 2006 |
Hattori M, Mizohata E, Tatsuguchi A, Shibata R, Kishishita S, Murayama K, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S. Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8. Proteins. 64: 284-7. PMID 16680676 DOI: 10.1002/prot.20937 |
0.603 |
|
| 2006 |
Sengoku T, Nureki O, Nakamura A, Kobayashi S, Yokoyama S. Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell. 125: 287-300. PMID 16630817 DOI: 10.1016/j.cell.2006.01.054 |
0.485 |
|
| 2006 |
Hattori M, Mizohata E, Manzoku M, Bessho Y, Murayama K, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S. Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8. Proteins. 61: 1117-20. PMID 16250002 DOI: 10.1002/prot.20692 |
0.603 |
|
| 2005 |
Fukunaga R, Ishitani R, Nureki O, Yokoyama S. Crystallization of leucyl-tRNA synthetase complexed with tRNALeu from the archaeon Pyrococcus horikoshii. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 30-2. PMID 16508082 DOI: 10.1107/S1744309104021827 |
0.461 |
|
| 2005 |
Watanabe K, Nureki O, Fukai S, Ishii R, Okamoto H, Yokoyama S, Endo Y, Hori H. Roles of conserved amino acid sequence motifs in the SpoU (TrmH) RNA methyltransferase family. The Journal of Biological Chemistry. 280: 10368-77. PMID 15637073 DOI: 10.1074/jbc.M411209200 |
0.501 |
|
| 2004 |
Katsura Y, Shirouzu M, Yamaguchi H, Ishitani R, Nureki O, Kuramitsu S, Hayashi H, Yokoyama S. Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV. Proteins. 55: 487-92. PMID 15103612 DOI: 10.1002/prot.20020 |
0.426 |
|
| 2004 |
Nureki O, Watanabe K, Fukai S, Ishii R, Endo Y, Hori H, Yokoyama S. Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme. Structure (London, England : 1993). 12: 593-602. PMID 15062082 DOI: 10.1016/j.str.2004.03.003 |
0.519 |
|
| 2004 |
Ito N, Nureki O, Shirouzu M, Yokoyama S, Hanaoka F. Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 8: 913-23. PMID 14750947 DOI: 10.1111/j.1365-2443.2003.00693.x |
0.426 |
|
| 2004 |
Sengoku T, Nureki O, Dohmae N, Nakamura A, Yokoyama S. Crystallization and preliminary X-ray analysis of the helicase domains of Vasa complexed with RNA and an ATP analogue. Acta Crystallographica. Section D, Biological Crystallography. 60: 320-2. PMID 14747711 DOI: 10.1107/S0907444903025897 |
0.485 |
|
| 2004 |
Kise Y, Lee SW, Park SG, Fukai S, Sengoku T, Ishii R, Yokoyama S, Kim S, Nureki O. A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase. Nature Structural & Molecular Biology. 11: 149-56. PMID 14730354 DOI: 10.1038/nsmb722 |
0.473 |
|
| 2004 |
Fujikawa N, Kurumizaka H, Nureki O, Tanaka Y, Yamazoe M, Hiraga S, Yokoyama S. Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein. Nucleic Acids Research. 32: 82-92. PMID 14704346 DOI: 10.1093/nar/gkh173 |
0.45 |
|
| 2004 |
Fukunaga R, Fukai S, Ishitani R, Nureki O, Yokoyama S. Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine. The Journal of Biological Chemistry. 279: 8396-402. PMID 14672940 DOI: 10.1074/Jbc.M312830200 |
0.486 |
|
| 2003 |
Okabe M, Tomita K, Ishitani R, Ishii R, Takeuchi N, Arisaka F, Nureki O, Yokoyama S. Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. The Embo Journal. 22: 5918-27. PMID 14592988 DOI: 10.1093/Emboj/Cdg563 |
0.476 |
|
| 2003 |
Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Söll D. Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases. Molecular Cell. 12: 287-94. PMID 14536069 DOI: 10.1016/S1097-2765(03)00280-6 |
0.47 |
|
| 2003 |
Tawaramoto MS, Park SY, Tanaka Y, Nureki O, Kurumizaka H, Yokoyama S. Crystal structure of the human centromere protein B (CENP-B) dimerization domain at 1.65-A resolution. The Journal of Biological Chemistry. 278: 51454-61. PMID 14522975 DOI: 10.1074/jbc.M310388200 |
0.426 |
|
| 2003 |
Kigawa T, Yamaguchi-Nunokawa E, Kodama K, Matsuda T, Yabuki T, Matsuda N, Ishitani R, Nureki O, Yokoyama S. Selenomethionine incorporation into a protein by cell-free synthesis. Journal of Structural and Functional Genomics. 2: 29-35. PMID 12836672 DOI: 10.1023/a:1013203532303 |
0.426 |
|
| 2003 |
Kobayashi T, Nureki O, Ishitani R, Yaremchuk A, Tukalo M, Cusack S, Sakamoto K, Yokoyama S. Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion. Nature Structural Biology. 10: 425-32. PMID 12754495 DOI: 10.2142/Biophys.43.S94_1 |
0.496 |
|
| 2003 |
Ishii R, Nureki O, Yokoyama S. Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus. The Journal of Biological Chemistry. 278: 32397-404. PMID 12746447 DOI: 10.1074/jbc.M300639200 |
0.426 |
|
| 2003 |
Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S, Yokoyama S. Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme. Cell. 113: 383-94. PMID 12732145 DOI: 10.1016/s0092-8674(03)00280-0 |
0.49 |
|
| 2003 |
Fujikawa N, Kurumizaka H, Nureki O, Terada T, Shirouzu M, Katayama T, Yokoyama S. Structural basis of replication origin recognition by the DnaA protein. Nucleic Acids Research. 31: 2077-86. PMID 12682358 DOI: 10.1093/nar/gkg309 |
0.453 |
|
| 2003 |
Fukai S, Nureki O, Sekine S, Shimada A, Vassylyev DG, Yokoyama S. Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase. Rna (New York, N.Y.). 9: 100-11. PMID 12554880 DOI: 10.1261/rna.2760703 |
0.426 |
|
| 2003 |
Sekine S, Nureki O, Dubois DY, Bernier S, Chênevert R, Lapointe J, Vassylyev DG, Yokoyama S. ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding. The Embo Journal. 22: 676-88. PMID 12554668 DOI: 10.1093/Emboj/Cdg053 |
0.487 |
|
| 2002 |
Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, Kim JH, Saito K, Sakamoto A, Inoue M, Shirouzu M, Yokoyama S. Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell. 110: 775-87. PMID 12297050 DOI: 10.1016/S0092-8674(02)00963-7 |
0.455 |
|
| 2002 |
Kagawa W, Kurumizaka H, Ishitani R, Fukai S, Nureki O, Shibata T, Yokoyama S. Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form. Molecular Cell. 10: 359-71. PMID 12191481 DOI: 10.1016/s1097-2765(02)00587-7 |
0.426 |
|
| 2002 |
Nureki O, Shirouzu M, Hashimoto K, Ishitani R, Terada T, Tamakoshi M, Oshima T, Chijimatsu M, Takio K, Vassylyev DG, Shibata T, Inoue Y, Kuramitsu S, Yokoyama S. An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallographica. Section D, Biological Crystallography. 58: 1129-37. PMID 12077432 DOI: 10.1107/s0907444902006601 |
0.426 |
|
| 2002 |
Ishitani R, Nureki O, Fukai S, Kijimoto T, Nameki N, Watanabe M, Kondo H, Sekine M, Okada N, Nishimura S, Yokoyama S. Crystal structure of archaeosine tRNA-guanine transglycosylase. Journal of Molecular Biology. 318: 665-77. PMID 12054814 DOI: 10.1016/S0022-2836(02)00090-6 |
0.532 |
|
| 2002 |
Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Söll D, Yokoyama S. Functional convergence of two lysyl-tRNA synthetases with unrelated topologies. Nature Structural Biology. 9: 257-62. PMID 11887185 DOI: 10.1038/Nsb777 |
0.496 |
|
| 2002 |
Hendrickson TL, Nomanbhoy TK, De Crécy-Lagard V, Fukai S, Nureki O, Yokoyama S, Schimmel P. Mutational separation of two pathways for editing by a class I tRNA synthetase Molecular Cell. 9: 353-362. PMID 11864608 DOI: 10.1016/S1097-2765(02)00449-5 |
0.494 |
|
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