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Matthew W. Pennell - Publications

Affiliations: 
University of Idaho, Moscow, ID, United States 
 2022 University of British Columbia, Vancouver, Vancouver, BC, Canada 
 2022- Quantitative and Computational Biology University of Southern California, Los Angeles, CA, United States 
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Freeman BG, Pennell MW. The latitudinal taxonomy gradient. Trends in Ecology & Evolution. 36: 778-786. PMID 34074540 DOI: 10.1016/j.tree.2021.05.003  0.466
2021 Neto-Bradley BM, Muir CD, Whitton J, Pennell MW. Phylogenetic history of vascular plant metabolism revealed using a macroevolutionary common garden. Proceedings. Biological Sciences. 288: 20210605. PMID 34074123 DOI: 10.1098/rspb.2021.0605  0.691
2021 Louca S, Pennell MW. Why extinction estimates from extant phylogenies are so often zero. Current Biology : Cb. 31: 3168-3173.e4. PMID 34019824 DOI: 10.1016/j.cub.2021.04.066  0.432
2021 Uyeda JC, Bone N, McHugh S, Rolland J, Pennell MW. How should functional relationships be evaluated using phylogenetic comparative methods? A case study using metabolic rate and body temperature. Evolution; International Journal of Organic Evolution. PMID 33788258 DOI: 10.1111/evo.14213  0.736
2020 Porto DS, Almeida EAB, Pennell MW. Investigating Morphological Complexes Using Informational Dissonance and Bayes Factors: A Case Study in Corbiculate Bees. Systematic Biology. PMID 32722788 DOI: 10.1093/Sysbio/Syaa059  0.359
2020 Louca S, Pennell MW. Extant timetrees are consistent with a myriad of diversification histories. Nature. 580: 502-505. PMID 32322065 DOI: 10.1038/s41586-020-2176-1  0.302
2020 Smith SD, Pennell MW, Dunn CW, Edwards SV. Phylogenetics is the New Genetics (for Most of Biodiversity). Trends in Ecology & Evolution. 35: 415-425. PMID 32294423 DOI: 10.1016/J.Tree.2020.01.005  0.303
2019 Henao Diaz LF, Harmon LJ, Sugawara MTC, Miller ET, Pennell MW. Reply to Wiens and Scholl: The time dependency of diversification rates is a widely observed phenomenon. Proceedings of the National Academy of Sciences of the United States of America. PMID 31719200 DOI: 10.1073/Pnas.1917189116  0.556
2019 Kaur KM, Pennell MW. Digest: Process-based phylogenetic models provide unique insights into the evolution of mutualistic networks. Evolution; International Journal of Organic Evolution. PMID 31583697 DOI: 10.1111/evo.13856  0.736
2019 Tucker CM, Aze T, Cadotte MW, Cantalapiedra JL, Chisholm C, Díaz S, Grenyer R, Huang D, Mazel F, Pearse WD, Pennell MW, Winter M, Mooers AO. Assessing the utility of conserving evolutionary history. Biological Reviews of the Cambridge Philosophical Society. PMID 31149769 DOI: 10.1111/Brv.12526  0.367
2019 Harmon LJ, Andreazzi CS, Débarre F, Drury J, Goldberg EE, Martins AB, Melián CJ, Narwani A, Nuismer SL, Pennell MW, Rudman SM, Seehausen O, Silvestro D, Weber M, Matthews B. Detecting the Macroevolutionary Signal of Species Interactions. Journal of Evolutionary Biology. PMID 30968509 DOI: 10.1111/Jeb.13477  0.601
2019 Henao Diaz LF, Harmon LJ, Sugawara MTC, Miller ET, Pennell MW. Macroevolutionary diversification rates show time dependency. Proceedings of the National Academy of Sciences of the United States of America. PMID 30910958 DOI: 10.1073/Pnas.1818058116  0.608
2019 Sarver BAJ, Pennell MW, Brown JW, Keeble S, Hardwick KM, Sullivan J, Harmon LJ. The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates. Peerj. 7: e6334. PMID 30886768 DOI: 10.7717/Peerj.6334  0.676
2018 Uyeda JC, Zenil-Ferguson R, Pennell MW. Rethinking phylogenetic comparative methods. Systematic Biology. PMID 29701838 DOI: 10.1093/Sysbio/Syy031  0.762
2017 Uyeda JC, Pennell MW, Miller ET, Maia R, McClain CR. The Evolution of Energetic Scaling across the Vertebrate Tree of Life. The American Naturalist. 190: 185-199. PMID 28731792 DOI: 10.1086/692326  0.7
2017 Schluter D, Pennell MW. Speciation gradients and the distribution of biodiversity. Nature. 546: 48-55. PMID 28569797 DOI: 10.1038/Nature22897  0.574
2017 Osmond MM, Barbour MA, Bernhardt JR, Pennell MW, Sunday JM, O'Connor MI. Warming-Induced Changes to Body Size Stabilize Consumer-Resource Dynamics. The American Naturalist. 189: 718-725. PMID 28514639 DOI: 10.1086/691387  0.612
2017 Zenil-Ferguson R, Pennell MW. Digest: Trait-dependent diversification and its alternatives. Evolution; International Journal of Organic Evolution. 71: 1732-1734. PMID 28474762 DOI: 10.1111/evo.13262  0.723
2015 Pennell MW, FitzJohn RG, Cornwell WK, Harmon LJ. Model Adequacy and the Macroevolution of Angiosperm Functional Traits. The American Naturalist. 186: E33-E50. PMID 26655160 DOI: 10.1086/682022  0.717
2015 Tank DC, Eastman JM, Pennell MW, Soltis PS, Soltis DE, Hinchliff CE, Brown JW, Sessa EB, Harmon LJ. Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications. The New Phytologist. 207: 454-67. PMID 26053261 DOI: 10.1111/Nph.13491  0.689
2015 Pennell MW, Kirkpatrick M, Otto SP, Vamosi JC, Peichel CL, Valenzuela N, Kitano J. Y fuse? Sex chromosome fusions in fishes and reptiles. Plos Genetics. 11: e1005237. PMID 25993542 DOI: 10.1371/Journal.Pgen.1005237  0.687
2015 Uyeda JC, Caetano DS, Pennell MW. Comparative Analysis of Principal Components Can be Misleading. Systematic Biology. 64: 677-89. PMID 25841167 DOI: 10.1093/Sysbio/Syv019  0.765
2014 Pennell MW, Eastman JM, Slater GJ, Brown JW, Uyeda JC, FitzJohn RG, Alfaro ME, Harmon LJ. geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees. Bioinformatics (Oxford, England). 30: 2216-8. PMID 24728855 DOI: 10.1093/Bioinformatics/Btu181  0.744
2014 Pennell MW, Harmon LJ, Uyeda JC. Speciation is unlikely to drive divergence rates. Trends in Ecology & Evolution. 29: 72-3. PMID 24418606 DOI: 10.1016/J.Tree.2013.12.010  0.759
2014 Slater GJ, Pennell MW. Robust regression and posterior predictive simulation increase power to detect early bursts of trait evolution. Systematic Biology. 63: 293-308. PMID 24149077 DOI: 10.1093/Sysbio/Syt066  0.32
2014 Pennell MW, Harmon LJ, Uyeda JC. Is there room for punctuated equilibrium in macroevolution? Trends in Ecology & Evolution. 29: 23-32. PMID 23978567 DOI: 10.1016/J.Tree.2013.07.004  0.77
2013 Pennell MW, Harmon LJ. An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology. Annals of the New York Academy of Sciences. 1289: 90-105. PMID 23773094 DOI: 10.1111/Nyas.12157  0.61
2013 Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158  0.656
2012 Pennell MW, Sarver BA, Harmon LJ. Trees of unusual size: biased inference of early bursts from large molecular phylogenies. Plos One. 7: e43348. PMID 22957027 DOI: 10.1371/Journal.Pone.0043348  0.622
2012 Rosenblum EB, Sarver BA, Brown JW, Des Roches S, Hardwick KM, Hether TD, Eastman JM, Pennell MW, Harmon LJ. Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales. Evolutionary Biology. 39: 255-261. PMID 22707806 DOI: 10.1007/S11692-012-9171-X  0.769
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