| Year |
Citation |
Score |
| 2022 |
Heide T, Househam J, Cresswell GD, Spiteri I, Lynn C, Mossner M, Kimberley C, Fernandez-Mateos J, Chen B, Zapata L, James C, Barozzi I, Chkhaidze K, Nichol D, Gunasri V, ... ... Shibata D, et al. The co-evolution of the genome and epigenome in colorectal cancer. Nature. PMID 36289335 DOI: 10.1038/s41586-022-05202-1 |
0.328 |
|
| 2022 |
Gabbutt C, Schenck RO, Weisenberger DJ, Kimberley C, Berner A, Househam J, Lakatos E, Robertson-Tessi M, Martin I, Patel R, Clark SK, Latchford A, Barnes CP, Leedham SJ, Anderson ARA, ... ... Shibata D, et al. Fluctuating methylation clocks for cell lineage tracing at high temporal resolution in human tissues. Nature Biotechnology. PMID 34980912 DOI: 10.1038/s41587-021-01109-w |
0.47 |
|
| 2021 |
Rud D, Marjoram P, Siegmund K, Shibata D. Functional human genes typically exhibit epigenetic conservation. Plos One. 16: e0253250. PMID 34520456 DOI: 10.1371/journal.pone.0253250 |
0.301 |
|
| 2021 |
Murgas KA, Ma Y, Shahidi LK, Mukherjee S, Allen AS, Shibata D, Ryser MD. A Bayesian Hierarchical Model to Estimate DNA Methylation Conservation in Colorectal Tumors. Bioinformatics (Oxford, England). PMID 34487148 DOI: 10.1093/bioinformatics/btab637 |
0.393 |
|
| 2019 |
Maley CC, Shibata D. Cancer cell evolution through the ages. Science (New York, N.Y.). 365: 440-441. PMID 31371596 DOI: 10.1126/Science.Aay2859 |
0.347 |
|
| 2015 |
Kang H, Salomon MP, Sottoriva A, Zhao J, Toy M, Press MF, Curtis C, Marjoram P, Siegmund K, Shibata D. Many private mutations originate from the first few divisions of a human colorectal adenoma. The Journal of Pathology. PMID 26119426 DOI: 10.1002/Path.4581 |
0.305 |
|
| 2013 |
Kang H, Shibata D. Direct measurements of human colon crypt stem cell niche genetic fidelity: the role of chance in non-darwinian mutation selection. Frontiers in Oncology. 3: 264. PMID 24133655 DOI: 10.3389/fonc.2013.00264 |
0.361 |
|
| 2012 |
Tsai AG, Chen DM, Lin M, Hsieh JC, Okitsu CY, Taghva A, Shibata D, Hsieh CL. Heterogeneity and randomness of DNA methylation patterns in human embryonic stem cells. Dna and Cell Biology. 31: 893-907. PMID 22277069 DOI: 10.1089/Dna.2011.1477 |
0.431 |
|
| 2011 |
Siegmund KD, Marjoram P, Tavaré S, Shibata D. High DNA methylation pattern intratumoral diversity implies weak selection in many human colorectal cancers. Plos One. 6: e21657. PMID 21738754 DOI: 10.1371/Journal.Pone.0021657 |
0.335 |
|
| 2011 |
Oghamian S, Sodir NM, Bashir MU, Shen H, Cullins AE, Carroll CA, Kundu P, Shibata D, Laird PW. Reduction of pancreatic acinar cell tumor multiplicity in Dnmt1 hypomorphic mice. Carcinogenesis. 32: 829-35. PMID 21362628 DOI: 10.1093/Carcin/Bgr039 |
0.325 |
|
| 2010 |
Hong YJ, Marjoram P, Shibata D, Siegmund KD. Using DNA methylation patterns to infer tumor ancestry. Plos One. 5: e12002. PMID 20711251 DOI: 10.1371/Journal.Pone.0012002 |
0.416 |
|
| 2010 |
Wang XM, Greiner TC, Bibikova M, Pike BL, Siegmund KD, Sinha UK, Müschen M, Jaeger EB, Weisenburger DD, Chan WC, Shibata D, Fan JB, Hacia JG. Identification and functional relevance of de novo DNA methylation in cancerous B-cell populations. Journal of Cellular Biochemistry. 109: 818-27. PMID 20069569 DOI: 10.1002/Jcb.22461 |
0.454 |
|
| 2009 |
Siegmund KD, Marjoram P, Tavaré S, Shibata D. Many colorectal cancers are "flat" clonal expansions. Cell Cycle (Georgetown, Tex.). 8: 2187-93. PMID 19556889 DOI: 10.4161/Cc.8.14.9151 |
0.317 |
|
| 2009 |
Siegmund KD, Marjoram P, Woo YJ, Tavaré S, Shibata D. Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers. Proceedings of the National Academy of Sciences of the United States of America. 106: 4828-33. PMID 19261858 DOI: 10.1073/Pnas.0810276106 |
0.406 |
|
| 2009 |
Woo YJ, Siegmund KD, Tavaré S, Shibata D. Older individuals appear to acquire mitotically older colorectal cancers. The Journal of Pathology. 217: 483-8. PMID 19165870 DOI: 10.1002/Path.2506 |
0.499 |
|
| 2008 |
Siegmund KD, Marjoram P, Shibata D. Modeling DNA methylation in a population of cancer cells. Statistical Applications in Genetics and Molecular Biology. 7: Article 18. PMID 18597664 DOI: 10.2202/1544-6115.1374 |
0.413 |
|
| 2008 |
Chu M, Siegmund KD, Hao QL, Crooks GM, Tavaré S, Shibata D. Inferring relative numbers of human leucocyte genome replications. British Journal of Haematology. 141: 862-71. PMID 18410448 DOI: 10.1111/J.1365-2141.2008.07142.X |
0.563 |
|
| 2008 |
Miller AJ, Dudley SD, Tsao JL, Shibata D, Liskay RM. Tractable Cre-lox system for stochastic alteration of genes in mice. Nature Methods. 5: 227-9. PMID 18264106 DOI: 10.1038/nmeth.1183 |
0.352 |
|
| 2008 |
Shibata D. Stem cells as common ancestors in a colorectal cancer ancestral tree Current Opinion in Gastroenterology. 24: 59-63. PMID 18043234 DOI: 10.1097/MOG.0b013e3282f2a2e9 |
0.374 |
|
| 2007 |
Shibata D, Tavaré S. Stem cell chronicles: autobiographies within genomes. Stem Cell Reviews. 3: 94-103. PMID 17873386 DOI: 10.1007/S12015-007-0022-6 |
0.301 |
|
| 2007 |
Nicolas P, Kim KM, Shibata D, Tavaré S. The stem cell population of the human colon crypt: analysis via methylation patterns. Plos Computational Biology. 3: e28. PMID 17335343 DOI: 10.1371/Journal.Pcbi.0030028 |
0.386 |
|
| 2006 |
Shibata D, Tavaré S. Counting divisions in a human somatic cell tree: how, what and why? Cell Cycle (Georgetown, Tex.). 5: 610-4. PMID 16582617 DOI: 10.4161/Cc.5.6.2570 |
0.502 |
|
| 2005 |
Kim JY, Tavaré S, Shibata D. Counting human somatic cell replications: methylation mirrors endometrial stem cell divisions. Proceedings of the National Academy of Sciences of the United States of America. 102: 17739-44. PMID 16314580 DOI: 10.1073/Pnas.0503976102 |
0.527 |
|
| 2005 |
Kim JY, Siegmund KD, Tavaré S, Shibata D. Age-related human small intestine methylation: evidence for stem cell niches. Bmc Medicine. 3: 10. PMID 15975143 DOI: 10.1186/1741-7015-3-10 |
0.433 |
|
| 2005 |
Kim JY, Beart RW, Shibata D. Stability of colon stem cell methylation after neo-adjuvant therapy in a patient with attenuated familial adenomatous polyposis Bmc Gastroenterology. 5. PMID 15941485 DOI: 10.1186/1471-230X-5-19 |
0.482 |
|
| 2004 |
Kim KM, Shibata D. Tracing ancestry with methylation patterns: Most crypts appear distantly related in normal adult human colon Bmc Gastroenterology. 4. PMID 15059289 DOI: 10.1186/1471-230X-4-8 |
0.364 |
|
| 2002 |
Kim KM, Shibata D. Methylation reveals a niche: Stem cell succession in human colon crypts Oncogene. 21: 5441-5449. PMID 12154406 DOI: 10.1038/sj.onc.1205604 |
0.383 |
|
| 2002 |
Trinh BN, Long TI, Nickel AE, Shibata D, Laird PW. DNA methyltransferase deficiency modifies cancer susceptibility in mice lacking DNA mismatch repair. Molecular and Cellular Biology. 22: 2906-17. PMID 11940649 DOI: 10.1128/Mcb.22.9.2906-2917.2002 |
0.304 |
|
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