| Year |
Citation |
Score |
| 2023 |
Senner CE, Dong Z, Prater M, Branco MR, Watson ED. One-carbon metabolism is required for epigenetic stability in the mouse placenta. Frontiers in Cell and Developmental Biology. 11: 1209928. PMID 37440923 DOI: 10.3389/fcell.2023.1209928 |
0.344 |
|
| 2023 |
Pal D, Patel M, Boulet F, Sundarraj J, Grant OA, Branco MR, Basu S, Santos SDM, Zabet NR, Scaffidi P, Pradeepa MM. H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function. Nature Structural & Molecular Biology. PMID 37308596 DOI: 10.1038/s41594-023-01016-5 |
0.455 |
|
| 2023 |
Frost JM, Amante SM, Okae H, Jones EM, Ashley B, Lewis RM, Cleal JK, Caley MP, Arima T, Maffucci T, Branco MR. Regulation of human trophoblast gene expression by endogenous retroviruses. Nature Structural & Molecular Biology. PMID 37012406 DOI: 10.1038/s41594-023-00960-6 |
0.407 |
|
| 2022 |
Taylor D, Branco MR. Inferring Protein-DNA Binding Profiles at Interspersed Repeats Using HiChIP and PAtChER. Methods in Molecular Biology (Clifton, N.J.). 2607: 199-214. PMID 36449165 DOI: 10.1007/978-1-0716-2883-6_11 |
0.372 |
|
| 2021 |
Taylor D, Lowe R, Philippe C, Cheng KCL, Grant OA, Zabet NR, Cristofari G, Branco MR. Locus-specific chromatin profiling of evolutionarily young transposable elements. Nucleic Acids Research. PMID 34908129 DOI: 10.1093/nar/gkab1232 |
0.465 |
|
| 2020 |
Shendy NAM, Raghu D, Roy S, Perry CH, Safi A, Branco MR, Homayouni R, Abell AN. Coordinated regulation of Rel expression by MAP3K4, CBP, and HDAC6 controls phenotypic switching. Communications Biology. 3: 475. PMID 32859943 DOI: 10.1038/s42003-020-01200-z |
0.38 |
|
| 2020 |
Senner CE, Chrysanthou S, Burge S, Lin HY, Branco MR, Hemberger M. TET1 and 5-Hydroxymethylation Preserve the Stem Cell State of Mouse Trophoblast. Stem Cell Reports. PMID 32442533 DOI: 10.1016/j.stemcr.2020.04.009 |
0.351 |
|
| 2020 |
Branco MR, Chuong EB. Crossroads between transposons and gene regulation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190330. PMID 32075561 DOI: 10.1098/Rstb.2019.0330 |
0.468 |
|
| 2019 |
Santiago M, Antunes C, Guedes M, Iacovino M, Kyba M, Reik W, Sousa N, Pinto L, Branco MR, Marques CJ. Tet3 regulates cellular identity and DNA methylation in neural progenitor cells. Cellular and Molecular Life Sciences : Cmls. PMID 31646359 DOI: 10.1007/S00018-019-03335-7 |
0.321 |
|
| 2019 |
Todd CD, Deniz Ö, Taylor D, Branco MR. Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells. Elife. 8. PMID 31012843 DOI: 10.7554/eLife.44344 |
0.398 |
|
| 2018 |
Schoenfelder S, Mifsud B, Senner CE, Todd CD, Chrysanthou S, Darbo E, Hemberger M, Branco MR. Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages. Nature Communications. 9: 4189. PMID 30305613 DOI: 10.1038/s41467-018-06666-4 |
0.493 |
|
| 2017 |
Garcia-Gomez A, Li T, Kerick M, Català-Moll F, Comet NR, Rodríguez-Ubreva J, de la Rica L, Branco MR, Martín J, Ballestar E. TET2- and TDG-mediated changes are required for the acquisition of distinct histone modifications in divergent terminal differentiation of myeloid cells. Nucleic Acids Research. 45: 10002-10017. PMID 28973458 DOI: 10.1093/nar/gkx666 |
0.311 |
|
| 2017 |
Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A. Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells. Nature Structural & Molecular Biology. PMID 28436944 DOI: 10.1038/Nsmb.3402 |
0.664 |
|
| 2017 |
Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, et al. Complex multi-enhancer contacts captured by genome architecture mapping. Nature. PMID 28273065 DOI: 10.1038/Nature21411 |
0.596 |
|
| 2016 |
de la Rica L, Deniz Ö, Cheng KC, Todd CD, Cruz C, Houseley J, Branco MR. TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells. Genome Biology. 17: 234. PMID 27863519 DOI: 10.1186/s13059-016-1096-8 |
0.382 |
|
| 2013 |
Ficz G, Hore TA, Santos F, Lee HJ, Dean W, Arand J, Krueger F, Oxley D, Paul YL, Walter J, Cook SJ, Andrews S, Branco MR, Reik W. FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency. Cell Stem Cell. 13: 351-9. PMID 23850245 DOI: 10.1016/j.stem.2013.06.004 |
0.387 |
|
| 2012 |
Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S. Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase. Genome Biology. 13: R69. PMID 22902005 DOI: 10.1186/Gb-2012-13-8-R69 |
0.463 |
|
| 2012 |
Krueger C, King MR, Krueger F, Branco MR, Osborne CS, Niakan KK, Higgins MJ, Reik W. Pairing of homologous regions in the mouse genome is associated with transcription but not imprinting status. Plos One. 7: e38983. PMID 22802932 DOI: 10.1371/journal.pone.0038983 |
0.449 |
|
| 2012 |
Booth MJ, Branco MR, Ficz G, Oxley D, Krueger F, Reik W, Balasubramanian S. Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science (New York, N.Y.). 336: 934-7. PMID 22539555 DOI: 10.1126/Science.1220671 |
0.356 |
|
| 2010 |
Ferrai C, Xie SQ, Luraghi P, Munari D, Ramirez F, Branco MR, Pombo A, Crippa MP. Poised transcription factories prime silent uPA gene prior to activation. Plos Biology. 8: e1000270. PMID 20052287 DOI: 10.1371/journal.pbio.1000270 |
0.627 |
|
| 2009 |
Redrup L, Branco MR, Perdeaux ER, Krueger C, Lewis A, Santos F, Nagano T, Cobb BS, Fraser P, Reik W. The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing. Development (Cambridge, England). 136: 525-30. PMID 19144718 DOI: 10.1242/dev.031328 |
0.363 |
|
| 2008 |
Branco MR, Branco T, Ramirez F, Pombo A. Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 413-26. PMID 18461481 DOI: 10.1007/s10577-008-1230-x |
0.66 |
|
| 2008 |
Noordermeer D, Branco MR, Splinter E, Klous P, Van Ijcken W, Swagemakers S, Koutsourakis M, Van Der Spek P, Pombo A, De Laat W. Transcription and chromatin organization of a housekeeping gene cluster containing an integrated β-globin locus control region Plos Genetics. 4. PMID 18369441 DOI: 10.1371/Journal.Pgen.1000016 |
0.68 |
|
| 2007 |
Pombo A, Branco MR. Functional organisation of the genome during interphase. Current Opinion in Genetics & Development. 17: 451-5. PMID 17920259 DOI: 10.1016/j.gde.2007.08.008 |
0.728 |
|
| 2007 |
Branco MR, Pombo A. Chromosome organization: new facts, new models. Trends in Cell Biology. 17: 127-34. PMID 17197184 DOI: 10.1016/j.tcb.2006.12.006 |
0.694 |
|
| 2006 |
Branco MR, Pombo A. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. Plos Biology. 4: e138. PMID 16623600 DOI: 10.1371/journal.pbio.0040138 |
0.669 |
|
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