Lydia M. Gregoret - Publications

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Biochemistry

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2003 Stawiski EW, Gregoret LM, Mandel-Gutfreund Y. Annotating nucleic acid-binding function based on protein structure. Journal of Molecular Biology. 326: 1065-79. PMID 12589754 DOI: 10.1016/S0022-2836(03)00031-7  0.626
2002 Mandel-Gutfreund Y, Gregoret LM. On the significance of alternating patterns of polar and non-polar residues in beta-strands. Journal of Molecular Biology. 323: 453-61. PMID 12381301 DOI: 10.1016/S0022-2836(02)00973-7  0.387
2002 Stawiski EW, Mandel-Gutfreund Y, Lowenthal AC, Gregoret LM. Progress in predicting protein function from structure: unique features of O-glycosidases. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 637-48. PMID 11928515  0.607
2002 Rodriguez HM, Robertson AD, Gregoret LM. Native state EX2 and EX1 hydrogen exchange of Escherichia coli CspA, a small beta-sheet protein. Biochemistry. 41: 2140-8. PMID 11841204 DOI: 10.1021/bi011347x  0.407
2001 Vu DM, Reid KL, Rodriguez HM, Gregoret LM. Examination of the folding of E. coli CspA through tryptophan substitutions. Protein Science : a Publication of the Protein Society. 10: 2028-36. PMID 11567094 DOI: 10.1110/Ps.16201  0.628
2001 Mandel-Gutfreund Y, Zaremba SM, Gregoret LM. Contributions of residue pairing to beta-sheet formation: conservation and covariation of amino acid residue pairs on antiparallel beta-strands. Journal of Molecular Biology. 305: 1145-59. PMID 11162120 DOI: 10.1006/Jmbi.2000.4364  0.382
2000 Rodriguez HM, Vu DM, Gregoret LM. Role of a solvent-exposed aromatic cluster in the folding of Escherichia coli CspA. Protein Science : a Publication of the Protein Society. 9: 1993-2000. PMID 11106173 DOI: 10.1110/Ps.9.10.1993  0.624
2000 Stawiski EW, Baucom AE, Lohr SC, Gregoret LM. Predicting protein function from structure: unique structural features of proteases. Proceedings of the National Academy of Sciences of the United States of America. 97: 3954-8. PMID 10759560 DOI: 10.1073/Pnas.070548997  0.626
2000 Leeson DT, Gai F, Rodriguez HM, Gregoret LM, Dyer RB. Protein folding and unfolding on a complex energy landscape. Proceedings of the National Academy of Sciences of the United States of America. 97: 2527-32. PMID 10681466 DOI: 10.1073/Pnas.040580397  0.383
1999 Zaremba SM, Gregoret LM. Context-dependence of amino acid residue pairing in antiparallel beta-sheets. Journal of Molecular Biology. 291: 463-79. PMID 10438632 DOI: 10.1006/Jmbi.1999.2961  0.47
1999 Bentz J, Baucom A, Hansen M, Gregoret LM. DINAMO: Interactive protein alignment and model building Bioinformatics. 15: 309-316. PMID 10320399 DOI: 10.1093/Bioinformatics/15.4.309  0.355
1998 Gregoret LM, Sauer RT. Tolerance of a protein helix to multiple alanine and valine substitutions. Folding & Design. 3: 119-26. PMID 9565756 DOI: 10.1016/S1359-0278(98)00017-0  0.528
1998 Hillier BJ, Rodriguez HM, Gregoret LM. Coupling protein stability and protein function in Escherichia coli CspA. Folding & Design. 3: 87-93. PMID 9565753 DOI: 10.1016/S1359-0278(98)00014-5  0.539
1998 Reid KL, Rodriguez HM, Hillier BJ, Gregoret LM. Stability and folding properties of a model beta-sheet protein, Escherichia coli CspA. Protein Science : a Publication of the Protein Society. 7: 470-9. PMID 9521124 DOI: 10.1002/Pro.5560070228  0.507
1994 Hunt NG, Gregoret LM, Cohen FE. The origins of protein secondary structure: Effects of packing density and hydrogen bonding studied by a fast conformational search Journal of Molecular Biology. 241: 214-225. PMID 8057361  0.329
1993 Gregoret LM, Sauer RT. Additivity of mutant effects assessed by binomial mutagenesis Proceedings of the National Academy of Sciences of the United States of America. 90: 4246-4250. PMID 8483940 DOI: 10.1073/Pnas.90.9.4246  0.374
1993 Wilson C, Gregoret LM, Agard DA. Modeling side-chain conformation for homologous proteins using an energy-based rotamer search. Journal of Molecular Biology. 229: 996-1006. PMID 8445659 DOI: 10.1006/Jmbi.1993.1100  0.352
1991 Gregoret LM, Cohen FE. Protein folding. Effect of packing density on chain conformation Journal of Molecular Biology. 219: 109-122. PMID 2023256 DOI: 10.1016/0022-2836(91)90861-Y  0.35
1990 Chiche L, Gregoret LM, Cohen FE, Kollman PA. Protein model structure evaluation using the solvation free energy of folding. Proceedings of the National Academy of Sciences of the United States of America. 87: 3240-3. PMID 2326281 DOI: 10.1073/Pnas.87.8.3240  0.403
1990 Gregoret LM, Cohen FE. Novel method for the rapid evaluation of packing in protein structures Journal of Molecular Biology. 211: 959-974. PMID 2313702 DOI: 10.1016/0022-2836(90)90086-2  0.404
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