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Eric W. Stawiski, Ph.D. - Publications

Affiliations: 
2001 University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Molecular Biology
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Pandey A, Stawiski EW, Durinck S, Gowda H, Goldstein LD, Barbhuiya MA, Schröder MS, Sreenivasamurthy SK, Kim SW, Phalke S, Suryamohan K, Lee K, Chakraborty P, Kode V, Shi X, et al. Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate. Nature Communications. 11: 4225. PMID 32839463 DOI: 10.1038/S41467-020-17880-4  0.333
2020 Krishnan A, Berthelet J, Renaud E, Rosigkeit S, Distler U, Stawiski E, Wang J, Modrusan Z, Fiedler M, Bienz M, Tenzer S, Schad A, Roth W, Thiede B, Seshagiri S, et al. Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas. Nature Communications. 11: 2056. PMID 32345963 DOI: 10.1038/S41467-020-15955-W  0.307
2020 Suryamohan K, Krishnankutty SP, Guillory J, Jevit M, Schröder MS, Wu M, Kuriakose B, Mathew OK, Perumal RC, Koludarov I, Goldstein LD, Senger K, Dixon MD, Velayutham D, Vargas D, ... ... Stawiski EW, et al. The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins. Nature Genetics. PMID 31907489 DOI: 10.1038/S41588-019-0559-8  0.328
2019 Yuan W, Goldstein LD, Durinck S, Chen YJ, Nguyen TT, Kljavin NM, Sokol ES, Stawiski EW, Haley B, Ziai J, Modrusan Z, Seshagiri S. S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis. Breast Cancer Research : Bcr. 21: 152. PMID 31881983 DOI: 10.1186/S13058-019-1238-5  0.31
2018 Pahuja KB, Nguyen TT, Jaiswal BS, Prabhash K, Thaker TM, Senger K, Chaudhuri S, Kljavin NM, Antony A, Phalke S, Kumar P, Mravic M, Stawiski EW, Vargas D, Durinck S, et al. Actionable Activating Oncogenic ERBB2/HER2 Transmembrane and Juxtamembrane Domain Mutations. Cancer Cell. 34: 792-806.e5. PMID 30449325 DOI: 10.1016/J.Ccell.2018.09.010  0.33
2017 Muthusamy B, Selvan LDN, Nguyen TT, Manoj J, Stawiski EW, Jaiswal BS, Wang W, Raja R, Ramprasad VL, Gupta R, Murugan S, Kadandale JS, Prasad TSK, Reddy K, Peterson A, et al. Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability. Omics : a Journal of Integrative Biology. 21: 295-303. PMID 28481730 DOI: 10.1089/Omi.2017.0009  0.327
2016 Bueno R, Stawiski EW, Goldstein LD, Durinck S, De Rienzo A, Modrusan Z, Gnad F, Nguyen TT, Jaiswal BS, Chirieac LR, Sciaranghella D, Dao N, Gustafson CE, Munir KJ, Hackney JA, et al. Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations. Nature Genetics. PMID 26928227 DOI: 10.1038/Ng.3520  0.327
2016 Seshagiri S, Stawiski E, Goldstein L, Durinck S, Modrusan Z, Gnad F, Nguyen TT, Jaiswal B, Rienzo AD, Richards W, Bueno R. Abstract LB-331: Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-331  0.37
2015 Klijn C, Durinck S, Stawiski EW, Haverty PM, Jiang Z, Liu H, Degenhardt J, Mayba O, Gnad F, Liu J, Pau G, Reeder J, Cao Y, Mukhyala K, Selvaraj SK, et al. A comprehensive transcriptional portrait of human cancer cell lines. Nature Biotechnology. 33: 306-12. PMID 25485619 DOI: 10.1038/Nbt.3080  0.341
2015 Durinck S, Stawiski EW, Pavía-Jiménez A, Modrusan Z, Kapur P, Jaiswal BS, Zhang N, Toffessi-Tcheuyap V, Nguyen TT, Pahuja KB, Chen YJ, Saleem S, Chaudhuri S, Heldens S, Jackson M, et al. Spectrum of diverse genomic alterations define non-clear cell renal carcinoma subtypes. Nature Genetics. 47: 13-21. PMID 25401301 DOI: 10.1038/Ng.3146  0.334
2014 Liu J, McCleland M, Stawiski EW, Gnad F, Mayba O, Haverty PM, Durinck S, Chen YJ, Klijn C, Jhunjhunwala S, Lawrence M, Liu H, Wan Y, Chopra V, Yaylaoglu MB, et al. Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer. Nature Communications. 5: 3830. PMID 24807215 DOI: 10.1038/Ncomms4830  0.317
2014 Jaiswal BS, Kljavin NM, Stawiski E, Durinck S, Chaudhuri S, Eigenbrot C, Schaefer G, Sauvage FJd, Seshagiri S. Abstract 4428: Oncogenic ERBB3 mutations in human cancers Cancer Research. 74: 4428-4428. DOI: 10.1158/1538-7445.Am2014-4428  0.318
2013 Evans MC, Paquet AC, Huang W, Napolitano L, Frantzell A, Toma J, Stawiski EW, Goetz MB, Petropoulos CJ, Whitcomb J, Coakley E, Haddad M. A case-based reasoning system for genotypic prediction of HIV-1 co-receptor tropism. Journal of Bioinformatics and Computational Biology. 11: 1350006. PMID 23859270 DOI: 10.1142/S0219720013500066  0.301
2013 Jaiswal BS, Kljavin NM, Stawiski EW, Chan E, Parikh C, Durinck S, Chaudhuri S, Pujara K, Guillory J, Edgar KA, Janakiraman V, Scholz RP, Bowman KK, Lorenzo M, Li H, et al. Oncogenic ERBB3 mutations in human cancers. Cancer Cell. 23: 603-17. PMID 23680147 DOI: 10.1016/J.Ccr.2013.04.012  0.311
2013 O'Hayre M, Vázquez-Prado J, Kufareva I, Stawiski EW, Handel TM, Seshagiri S, Gutkind JS. The emerging mutational landscape of G proteins and G-protein-coupled receptors in cancer. Nature Reviews. Cancer. 13: 412-24. PMID 23640210 DOI: 10.1038/Nrc3521  0.356
2013 Yuan W, Stawiski E, Janakiraman V, Chan E, Durinck S, Edgar KA, Kljavin NM, Rivers CS, Gnad F, Roose-Girma M, Haverty PM, Fedorowicz G, Heldens S, Soriano RH, Zhang Z, et al. Conditional activation of Pik3ca H1047R in a knock-in mouse model promotes mammary tumorigenesis and emergence of mutations Oncogene. 32: 318-326. PMID 22370636 DOI: 10.1038/Onc.2012.53  0.312
2012 Parikh C, Janakiraman V, Wu WI, Foo CK, Kljavin NM, Chaudhuri S, Stawiski E, Lee B, Lin J, Li H, Lorenzo MN, Yuan W, Guillory J, Jackson M, Rondon J, et al. Disruption of PH-kinase domain interactions leads to oncogenic activation of AKT in human cancers. Proceedings of the National Academy of Sciences of the United States of America. 109: 19368-73. PMID 23134728 DOI: 10.1073/Pnas.1204384109  0.3
2012 Rudin CM, Durinck S, Stawiski EW, Poirier JT, Modrusan Z, Shames DS, Bergbower EA, Guan Y, Shin J, Guillory J, Rivers CS, Foo CK, Bhatt D, Stinson J, Gnad F, et al. Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer. Nature Genetics. 44: 1111-6. PMID 22941189 DOI: 10.1038/Ng.2405  0.358
2012 Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, et al. Recurrent R-spondin fusions in colon cancer. Nature. 488: 660-4. PMID 22895193 DOI: 10.1038/Nature11282  0.364
2011 Hinkley T, Martins J, Chappey C, Haddad M, Stawiski E, Whitcomb JM, Petropoulos CJ, Bonhoeffer S. A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase. Nature Genetics. 43: 487-9. PMID 21441930 DOI: 10.1038/Ng.795  0.31
2011 Toma J, Weinheimer SP, Stawiski E, Whitcomb JM, Lewis ST, Petropoulos CJ, Huang W. Loss of asparagine-linked glycosylation sites in variable region 5 of human immunodeficiency virus type 1 envelope is associated with resistance to CD4 antibody ibalizumab. Journal of Virology. 85: 3872-80. PMID 21289125 DOI: 10.1128/Jvi.02237-10  0.317
2011 Huang W, Frantzell A, Toma J, Fransen S, Whitcomb JM, Stawiski E, Petropoulos CJ. Mutational pathways and genetic barriers to CXCR4-mediated entry by human immunodeficiency virus type 1. Virology. 409: 308-18. PMID 21071054 DOI: 10.1016/J.Virol.2010.09.026  0.346
2010 Young TP, Parkin NT, Stawiski E, Pilot-Matias T, Trinh R, Kempf DJ, Norton M. Prevalence, mutation patterns, and effects on protease inhibitor susceptibility of the L76V mutation in HIV-1 protease. Antimicrobial Agents and Chemotherapy. 54: 4903-6. PMID 20805393 DOI: 10.1128/Aac.00906-10  0.336
2009 Kosakovsky Pond SL, Posada D, Stawiski E, Chappey C, Poon AF, Hughes G, Fearnhill E, Gravenor MB, Leigh Brown AJ, Frost SD. An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. Plos Computational Biology. 5: e1000581. PMID 19956739 DOI: 10.1371/Journal.Pcbi.1000581  0.323
2009 Kolli M, Stawiski E, Chappey C, Schiffer CA. Human immunodeficiency virus type 1 protease-correlated cleavage site mutations enhance inhibitor resistance. Journal of Virology. 83: 11027-42. PMID 19706699 DOI: 10.1128/Jvi.00628-09  0.32
2008 Huang W, Toma J, Fransen S, Stawiski E, Reeves JD, Whitcomb JM, Parkin N, Petropoulos CJ. Coreceptor tropism can be influenced by amino acid substitutions in the gp41 transmembrane subunit of human immunodeficiency virus type 1 envelope protein. Journal of Virology. 82: 5584-93. PMID 18353956 DOI: 10.1128/Jvi.02676-07  0.318
2003 Stawiski EW, Gregoret LM, Mandel-Gutfreund Y. Annotating nucleic acid-binding function based on protein structure. Journal of Molecular Biology. 326: 1065-79. PMID 12589754 DOI: 10.1016/S0022-2836(03)00031-7  0.65
2002 Stawiski EW, Mandel-Gutfreund Y, Lowenthal AC, Gregoret LM. Progress in predicting protein function from structure: unique features of O-glycosidases. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 637-48. PMID 11928515  0.651
2000 Stawiski EW, Baucom AE, Lohr SC, Gregoret LM. Predicting protein function from structure: unique structural features of proteases. Proceedings of the National Academy of Sciences of the United States of America. 97: 3954-8. PMID 10759560 DOI: 10.1073/Pnas.070548997  0.658
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