| Year |
Citation |
Score |
| 2023 |
Flores R, Huneau C, Burlot L, Lainé M, Kimmel E, Pommier C, Alaux M, Adam-Blondon AF, Pont C, Quesneville H, Salse J. SyntenyViewer: a comparative genomics-driven translational research tool. Database : the Journal of Biological Databases and Curation. 2023. PMID 37159239 DOI: 10.1093/database/baad027 |
0.473 |
|
| 2022 |
Rech GE, Radío S, Guirao-Rico S, Aguilera L, Horvath V, Green L, Lindstadt H, Jamilloux V, Quesneville H, González J. Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila. Nature Communications. 13: 1948. PMID 35413957 DOI: 10.1038/s41467-022-29518-8 |
0.51 |
|
| 2021 |
Ben Amara W, Quesneville H, Khemakhem MM. A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges. Plos One. 16: e0257996. PMID 34634072 DOI: 10.1371/journal.pone.0257996 |
0.511 |
|
| 2020 |
Quesneville H. Twenty years of transposable element analysis in the genome. Mobile Dna. 11: 28. PMID 32742313 DOI: 10.1186/S13100-020-00223-X |
0.599 |
|
| 2019 |
Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Plos Genetics. 15: e1007900. PMID 30753202 DOI: 10.1371/Journal.Pgen.1007900 |
0.751 |
|
| 2019 |
Amselem J, Cornut G, Choisne N, Alaux M, Alfama-Depauw F, Jamilloux V, Maumus F, Letellier T, Luyten I, Pommier C, Adam-Blondon AF, Quesneville H. RepetDB: a unified resource for transposable element references. Mobile Dna. 10: 6. PMID 30719103 DOI: 10.1186/S13100-019-0150-Y |
0.56 |
|
| 2018 |
Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, ... ... Quesneville H, et al. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science (New York, N.Y.). 361. PMID 30115783 DOI: 10.1126/Science.Aar7191 |
0.59 |
|
| 2018 |
Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, ... ... Quesneville H, et al. Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biology. 19: 111. PMID 30115101 DOI: 10.1186/S13059-018-1491-4 |
0.576 |
|
| 2018 |
Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, ... ... Quesneville H, et al. Oak genome reveals facets of long lifespan. Nature Plants. PMID 29915331 DOI: 10.1038/S41477-018-0172-3 |
0.518 |
|
| 2018 |
Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, ... ... Quesneville H, et al. A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits. Nature Plants. PMID 29892093 DOI: 10.1038/S41477-018-0166-1 |
0.567 |
|
| 2018 |
Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, Caissard JC, Couloux A, Cottret L, Aury JM, ... ... Quesneville H, et al. The Rosa genome provides new insights into the domestication of modern roses. Nature Genetics. PMID 29713014 DOI: 10.1038/S41588-018-0110-3 |
0.559 |
|
| 2017 |
Dzale Yeumo E, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA, Jonquet C, Laporte MA, Larmande P, Pommier C, Protonotarios V, ... ... Quesneville H, et al. Developing data interoperability using standards: A wheat community use case. F1000research. 6: 1843. PMID 29333241 DOI: 10.12688/F1000Research.12234.2 |
0.324 |
|
| 2017 |
Quraishi UM, Pont C, Ain QU, Flores R, Burlot L, Alaux M, Quesneville H, Salse J. Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.). Frontiers in Plant Science. 8: 1843. PMID 29184557 DOI: 10.3389/Fpls.2017.01843 |
0.444 |
|
| 2017 |
Gouin A, Bretaudeau A, Nam K, Gimenez S, Aury JM, Duvic B, Hilliou F, Durand N, Montagné N, Darboux I, Kuwar S, Chertemps T, Siaussat D, Bretschneider A, Moné Y, ... ... Quesneville H, et al. Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges. Scientific Reports. 7: 11816. PMID 28947760 DOI: 10.1038/S41598-017-10461-4 |
0.483 |
|
| 2017 |
Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro EA, Gouzy J, Rees DJG, Guérif P, Muranty H, ... ... Quesneville H, et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genetics. PMID 28581499 DOI: 10.1038/Ng.3886 |
0.548 |
|
| 2017 |
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, ... ... Quesneville H, et al. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 1-5. PMID 28092920 DOI: 10.1038/Nature20803 |
0.457 |
|
| 2017 |
Adam-Blondon AF, Alaux M, Durand S, Letellier T, Merceron G, Mohellibi N, Pommier C, Steinbach D, Alfama F, Amselem J, Charruaud D, Choisne N, Flores R, Guerche C, Jamilloux V, ... ... Quesneville H, et al. Mining Plant Genomic and Genetic Data Using the GnpIS Information System. Methods in Molecular Biology (Clifton, N.J.). 1533: 103-117. PMID 27987166 DOI: 10.1007/978-1-4939-6658-5_5 |
0.443 |
|
| 2017 |
Quesneville H. WheatIS: a genetics and genomics information system for the wheat research community F1000research. 6. DOI: 10.7490/F1000Research.1113993.1 |
0.423 |
|
| 2016 |
Lesage P, Bétermier M, Bridier-Nahmias A, Chandler M, Chambeyron S, Cristofari G, Gilbert N, Quesneville H, Vaury C, Volff JN. International Congress on Transposable elements (ICTE 2016) in Saint Malo: mobile elements under the sun of Brittany. Mobile Dna. 7: 19. PMID 30044887 DOI: 10.1186/S13100-016-0075-7 |
0.423 |
|
| 2016 |
Adam-Blondon AF, Alaux M, Pommier C, Cantu D, Cheng ZM, Cramer GR, Davies C, Delrot S, Deluc L, Di Gaspero G, Grimplet J, Fennell A, Londo JP, Kersey P, Mattivi F, ... ... Quesneville H, et al. Towards an open grapevine information system. Horticulture Research. 3: 16056. PMID 27917288 DOI: 10.1038/Hortres.2016.56 |
0.355 |
|
| 2016 |
Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, ... ... Quesneville H, et al. transPLANT Resources for Triticeae Genomic Data. The Plant Genome. 9. PMID 27898761 DOI: 10.3835/Plantgenome2015.06.0038 |
0.467 |
|
| 2016 |
El Baidouri M, Murat F, Veyssiere M, Molinier M, Flores R, Burlot L, Alaux M, Quesneville H, Pont C, Salse J. Reconciling the evolutionary origin of bread wheat (Triticum aestivum). The New Phytologist. PMID 27551821 DOI: 10.1111/Nph.14113 |
0.481 |
|
| 2016 |
Jouffroy O, Saha S, Mueller L, Quesneville H, Maumus F. Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening. Bmc Genomics. 17: 624. PMID 27519651 DOI: 10.1186/S12864-016-2980-Z |
0.611 |
|
| 2016 |
Molitor A, Latrasse D, Zytnicki M, Andrey P, Houba-Hérin N, Hachet M, Battail C, Del Prete S, Alberti A, Quesneville H, Gaudin V. The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 subunit LHP1 function in concert to regulate the transcription of stress-responsive genes. The Plant Cell. PMID 27495811 DOI: 10.1105/Tpc.16.00244 |
0.349 |
|
| 2016 |
Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Crollius HR, Salse J. Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 17: 64. PMID 27044591 DOI: 10.1186/S13059-016-0887-2 |
0.344 |
|
| 2016 |
Maumus F, Quesneville H. Impact and insights from ancient repetitive elements in plant genomes. Current Opinion in Plant Biology. 30: 41-46. PMID 26874965 DOI: 10.1016/J.Pbi.2016.01.003 |
0.565 |
|
| 2016 |
Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, ... ... Quesneville H, et al. TransPLANT resources for triticeae genomic data Plant Genome. 9. DOI: 10.3835/plantgenome2015.06.0038 |
0.31 |
|
| 2015 |
Maumus F, Fiston-Lavier AS, Quesneville H. Impact of transposable elements on insect genomes and biology. Current Opinion in Insect Science. 7: 30-36. PMID 32846669 DOI: 10.1016/J.Cois.2015.01.001 |
0.77 |
|
| 2015 |
Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, ... ... Quesneville H, et al. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants. 1: 14023. PMID 27246759 DOI: 10.1038/Nplants.2014.23 |
0.457 |
|
| 2015 |
Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Crollius HR, Salse J. Understanding Brassicaceae evolution through ancestral genome reconstruction. Genome Biology. 16: 262. PMID 26653025 DOI: 10.1186/S13059-015-0814-Y |
0.57 |
|
| 2015 |
Amselem J, Vigouroux M, Oberhaensli S, Brown JK, Bindschedler LV, Skamnioti P, Wicker T, Spanu PD, Quesneville H, Sacristán S. Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. Bmc Genomics. 16: 917. PMID 26556056 DOI: 10.1186/S12864-015-2185-X |
0.483 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6 |
0.747 |
|
| 2015 |
Perlin MH, Amselem J, Fontanillas E, Toh SS, Chen Z, Goldberg J, Duplessis S, Henrissat B, Young S, Zeng Q, Aguileta G, Petit E, Badouin H, Andrews J, Razeeq D, ... ... Quesneville H, et al. Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. Bmc Genomics. 16: 461. PMID 26076695 DOI: 10.1186/S12864-015-1660-8 |
0.465 |
|
| 2015 |
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, ... ... Quesneville H, et al. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources. PMID 25944057 DOI: 10.1111/1755-0998.12425 |
0.555 |
|
| 2015 |
Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, ... ... Quesneville H, et al. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Research. 43: W589-98. PMID 25897122 DOI: 10.1093/Nar/Gkv350 |
0.312 |
|
| 2015 |
Amselem J, Lebrun MH, Quesneville H. Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes. Bmc Genomics. 16: 141. PMID 25766680 DOI: 10.1186/S12864-015-1347-1 |
0.517 |
|
| 2015 |
Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, ... Quesneville H, et al. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Bmc Genomics. 16: 112. PMID 25765701 DOI: 10.1186/S12864-015-1331-9 |
0.559 |
|
| 2015 |
Murat F, Zhang R, Guizard S, Gavranovi? H, Flores R, Steinbach D, Quesneville H, Tannier E, Salse J. Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops. Genome Biology and Evolution. 7: 735-49. PMID 25637221 DOI: 10.1093/Gbe/Evv014 |
0.567 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods Mobile Dna. 6. DOI: 10.1186/s13100-015-0044-6 |
0.699 |
|
| 2015 |
Maumus F, Fiston-Lavier AS, Quesneville H. Impact of transposable elements on insect genomes and biology Current Opinion in Insect Science. 7: 30-36. DOI: 10.1016/j.cois.2015.01.001 |
0.776 |
|
| 2014 |
Daron J, Glover N, Pingault L, Theil S, Jamilloux V, Paux E, Barbe V, Mangenot S, Alberti A, Wincker P, Quesneville H, Feuillet C, Choulet F. Organization and evolution of transposable elements along the bread wheat chromosome 3B. Genome Biology. 15: 546. PMID 25476263 DOI: 10.1186/S13059-014-0546-4 |
0.532 |
|
| 2014 |
Geering AD, Maumus F, Copetti D, Choisne N, Zwickl DJ, Zytnicki M, McTaggart AR, Scalabrin S, Vezzulli S, Wing RA, Quesneville H, Teycheney PY. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications. 5: 5269. PMID 25381880 DOI: 10.1038/Ncomms6269 |
0.568 |
|
| 2014 |
Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics. 46: 1034-8. PMID 25064008 DOI: 10.1038/Ng.3046 |
0.475 |
|
| 2014 |
Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, ... ... Quesneville H, et al. Structural and functional partitioning of bread wheat chromosome 3B. Science (New York, N.Y.). 345: 1249721. PMID 25035497 DOI: 10.1126/Science.1249721 |
0.485 |
|
| 2014 |
Maumus F, Quesneville H. Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana. Nature Communications. 5: 4104. PMID 24954583 DOI: 10.1038/Ncomms5104 |
0.535 |
|
| 2014 |
Zytnicki M, Akhunov E, Quesneville H. Tedna: a transposable element de novo assembler. Bioinformatics (Oxford, England). 30: 2656-8. PMID 24894500 DOI: 10.1093/bioinformatics/btu365 |
0.411 |
|
| 2014 |
Hoede C, Arnoux S, Moisset M, Chaumier T, Inizan O, Jamilloux V, Quesneville H. PASTEC: an automatic transposable element classification tool. Plos One. 9: e91929. PMID 24786468 DOI: 10.1371/Journal.Pone.0091929 |
0.466 |
|
| 2014 |
Maumus F, Quesneville H. Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter. Plos One. 9: e94101. PMID 24709859 DOI: 10.1371/Journal.Pone.0094101 |
0.584 |
|
| 2014 |
Pauchet Y, Saski CA, Feltus FA, Luyten I, Quesneville H, Heckel DG. Studying the organization of genes encoding plant cell wall degrading enzymes in Chrysomela tremula provides insights into a leaf beetle genome. Insect Molecular Biology. 23: 286-300. PMID 24456018 DOI: 10.1111/Imb.12081 |
0.526 |
|
| 2014 |
Murat F, Zhang R, Guizard S, Flores R, Armero A, Pont C, Steinbach D, Quesneville H, Cooke R, Salse J. Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes. Genome Biology and Evolution. 6: 12-33. PMID 24317974 DOI: 10.1093/Gbe/Evt200 |
0.506 |
|
| 2014 |
Lukaszewski AJ, Alberti A, Sharpe A, Kilian A, Stanca AM, Keller B, Clavijo BJ, Friebe B, Gill B, Wulff B, Chapman B, Steuernagel B, Feuillet C, Viseux C, Pozniak C, ... ... Quesneville H, et al. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Science. 345. DOI: 10.1126/science.1251788 |
0.419 |
|
| 2013 |
Zanni V, Eymery A, Coiffet M, Zytnicki M, Luyten I, Quesneville H, Vaury C, Jensen S. Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters. Proceedings of the National Academy of Sciences of the United States of America. 110: 19842-7. PMID 24248389 DOI: 10.1073/Pnas.1313677110 |
0.431 |
|
| 2013 |
Pont C, Murat F, Guizard S, Flores R, Foucrier S, Bidet Y, Quraishi UM, Alaux M, Doležel J, Fahima T, Budak H, Keller B, Salvi S, Maccaferri M, Steinbach D, ... ... Quesneville H, et al. Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. The Plant Journal : For Cell and Molecular Biology. 76: 1030-44. PMID 24164652 DOI: 10.1111/Tpj.12366 |
0.434 |
|
| 2013 |
Steinbach D, Alaux M, Amselem J, Choisne N, Durand S, Flores R, Keliet AO, Kimmel E, Lapalu N, Luyten I, Michotey C, Mohellibi N, Pommier C, Reboux S, Valdenaire D, ... ... Quesneville H, et al. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database : the Journal of Biological Databases and Curation. 2013: bat058. PMID 23959375 DOI: 10.1093/Database/Bat058 |
0.478 |
|
| 2013 |
Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, et al. The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nature Genetics. 45: 1092-6. PMID 23852167 DOI: 10.1038/Ng.2704 |
0.544 |
|
| 2013 |
Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Quesneville H, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669 |
0.502 |
|
| 2013 |
Zytnicki M, Luo Y, Quesneville H. Efficient comparison of sets of intervals with NC-lists. Bioinformatics (Oxford, England). 29: 933-9. PMID 23413438 DOI: 10.1093/Bioinformatics/Btt070 |
0.333 |
|
| 2012 |
Ainouche A, Bétermier M, Chandler M, Cordaux R, Cristofari G, Deragon JM, Lesage P, Panaud O, Quesneville H, Vaury C, Vieira C, Vitte C. International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Mobile Dna. 3: 17. PMID 23110759 DOI: 10.1186/1759-8753-3-17 |
0.398 |
|
| 2012 |
Leroy P, Guilhot N, Sakai H, Bernard A, Choulet F, Theil S, Reboux S, Amano N, Flutre T, Pelegrin C, Ohyanagi H, Seidel M, Giacomoni F, Reichstadt M, Alaux M, ... ... Quesneville H, et al. TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Frontiers in Plant Science. 3: 5. PMID 22645565 DOI: 10.3389/Fpls.2012.00005 |
0.565 |
|
| 2012 |
Permal E, Flutre T, Quesneville H. Roadmap for annotating transposable elements in eukaryote genomes. Methods in Molecular Biology (Clifton, N.J.). 859: 53-68. PMID 22367865 DOI: 10.1007/978-1-61779-603-6_3 |
0.583 |
|
| 2012 |
Flutre T, Permal E, Quesneville H. Transposable element annotation in completely sequenced eukaryote genomes Topics in Current Genetics. 24: 17-39. DOI: 10.1007/978-3-642-31842-9-2 |
0.495 |
|
| 2011 |
Flutre T, Permal E, Quesneville H. In search of lost trajectories: Recovering the diversification of transposable elements. Mobile Genetic Elements. 1: 151-154. PMID 22016865 DOI: 10.4161/Mge.1.2.17094 |
0.586 |
|
| 2011 |
Zytnicki M, Quesneville H. S-MART, a software toolbox to aid RNA-Seq data analysis. Plos One. 6: e25988. PMID 21998740 DOI: 10.1371/Journal.Pone.0025988 |
0.328 |
|
| 2011 |
Stanojcic S, Gimenez S, Permal E, Cousserans F, Quesneville H, Fournier P, d'Alençon E. Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda. Plos One. 6: e24746. PMID 21980354 DOI: 10.1371/Journal.Pone.0024746 |
0.498 |
|
| 2011 |
Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, ... ... Quesneville H, et al. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. Plos Genetics. 7: e1002230. PMID 21876677 DOI: 10.1371/Journal.Pgen.1002230 |
0.556 |
|
| 2011 |
Field B, Fiston-Lavier AS, Kemen A, Geisler K, Quesneville H, Osbourn AE. Formation of plant metabolic gene clusters within dynamic chromosomal regions. Proceedings of the National Academy of Sciences of the United States of America. 108: 16116-21. PMID 21876149 DOI: 10.1073/Pnas.1109273108 |
0.692 |
|
| 2011 |
Ahmed I, Sarazin A, Bowler C, Colot V, Quesneville H. Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis. Nucleic Acids Research. 39: 6919-31. PMID 21586580 DOI: 10.1093/Nar/Gkr324 |
0.31 |
|
| 2011 |
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, ... ... Quesneville H, et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America. 108: 9166-71. PMID 21536894 DOI: 10.1073/Pnas.1019315108 |
0.473 |
|
| 2011 |
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, ... ... Quesneville H, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nature Communications. 2: 202. PMID 21326234 DOI: 10.1038/Ncomms1189 |
0.587 |
|
| 2011 |
Flutre T, Duprat E, Feuillet C, Quesneville H. Considering transposable element diversification in de novo annotation approaches. Plos One. 6: e16526. PMID 21304975 DOI: 10.1371/Journal.Pone.0016526 |
0.569 |
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| 2011 |
Alaux M, Jamilloux V, Alfama F, Verdelet D, Keliet A, Reboux S, Mohellibi N, Durand S, Kimmel E, Luyten I, Steinbach D, Quesneville H. Wheat international sequence repository integrated with genomic and genetic data in GnpIS F1000research. 2. DOI: 10.7490/F1000Research.1939.1 |
0.52 |
|
| 2011 |
Cock JM, Collén J, Sterck L, Rouzé P, Scornet D, Anthouard V, Artiguenave F, Aury J, Billiau K, Bonnet E, Bothwell JH, Brillet L, Carre W, Coelho SM, Corre E, ... ... Quesneville H, et al. Nature, nurture and the structure of macroalgal genomes European Journal of Phycology. 46: 39-39. DOI: 10.1080/09670262.2011.613165 |
0.502 |
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| 2010 |
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, ... ... Quesneville H, et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science (New York, N.Y.). 330: 1543-6. PMID 21148392 DOI: 10.1126/Science.1194573 |
0.541 |
|
| 2010 |
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, ... ... Quesneville H, et al. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature. 465: 617-21. PMID 20520714 DOI: 10.1038/Nature09016 |
0.545 |
|
| 2010 |
d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, Flutre T, Couloux A, East P, Gordon K, Mita K, ... Quesneville H, et al. Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements. Proceedings of the National Academy of Sciences of the United States of America. 107: 7680-5. PMID 20388903 DOI: 10.1073/pnas.0910413107 |
0.483 |
|
| 2010 |
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, Montanini B, Morin E, Noel B, Percudani R, Porcel B, Rubini A, Amicucci A, Amselem J, Anthouard V, ... ... Quesneville H, et al. Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature. 464: 1033-8. PMID 20348908 DOI: 10.1038/Nature08867 |
0.558 |
|
| 2010 |
Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C, Cree A, Chacko J, Chandrabose MN, Dao MD, Dinh HH, ... ... Quesneville H, et al. Genome sequence of the pea aphid Acyrthosiphon pisum Plos Biology. 8. DOI: 10.1371/journal.pbio.1000313 |
0.459 |
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| 2008 |
Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau MN. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proceedings of the National Academy of Sciences of the United States of America. 105: 15837-42. PMID 18838675 DOI: 10.1073/Pnas.0805208105 |
0.5 |
|
| 2008 |
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, ... ... Quesneville H, et al. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26: 909-15. PMID 18660804 DOI: 10.1038/Nbt.1482 |
0.497 |
|
| 2008 |
Buisine N, Quesneville H, Colot V. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets. Genomics. 91: 467-75. PMID 18343092 DOI: 10.1016/J.Ygeno.2008.01.005 |
0.531 |
|
| 2008 |
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, ... ... Quesneville H, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 452: 88-92. PMID 18322534 DOI: 10.1038/Nature06556 |
0.495 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Quesneville H, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.712 |
|
| 2007 |
Bergman CM, Quesneville H. Discovering and detecting transposable elements in genome sequences. Briefings in Bioinformatics. 8: 382-92. PMID 17932080 DOI: 10.1093/Bib/Bbm048 |
0.715 |
|
| 2007 |
Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, ... ... Quesneville H, et al. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science (New York, N.Y.). 317: 1400-2. PMID 17823352 DOI: 10.1126/Science.1143708 |
0.503 |
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| 2007 |
Fiston-Lavier AS, Anxolabehere D, Quesneville H. A model of segmental duplication formation in Drosophila melanogaster. Genome Research. 17: 1458-70. PMID 17726166 DOI: 10.1101/Gr.6208307 |
0.738 |
|
| 2007 |
Vitte C, Panaud O, Quesneville H. LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss. Bmc Genomics. 8: 218. PMID 17617907 DOI: 10.1186/1471-2164-8-218 |
0.508 |
|
| 2007 |
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, ... ... Quesneville H, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science (New York, N.Y.). 316: 1718-23. PMID 17510324 DOI: 10.1126/Science.1138878 |
0.548 |
|
| 2006 |
Bergman CM, Quesneville H, Anxolabéhère D, Ashburner M. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biology. 7: R112. PMID 17134480 DOI: 10.1186/Gb-2006-7-11-R112 |
0.699 |
|
| 2006 |
Quesneville H, Nouaud D, Anxolabéhère D. P elements and MITE relatives in the whole genome sequence of Anopheles gambiae. Bmc Genomics. 7: 214. PMID 16919158 DOI: 10.1186/1471-2164-7-214 |
0.462 |
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| 2006 |
Drouaud J, Camilleri C, Bourguignon PY, Canaguier A, Bérard A, Vezon D, Giancola S, Brunel D, Colot V, Prum B, Quesneville H, Mézard C. Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots". Genome Research. 16: 106-14. PMID 16344568 DOI: 10.1101/Gr.4319006 |
0.322 |
|
| 2005 |
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D. Combined evidence annotation of transposable elements in genome sequences. Plos Computational Biology. 1: 166-75. PMID 16110336 DOI: 10.1371/Journal.Pcbi.0010022 |
0.724 |
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| 2005 |
Eiglmeier K, Wincker P, Cattolico L, Anthouard V, Holm I, Eckenberg R, Quesneville H, Jaillon O, Collins FH, Weissenbach J, Brey PT, Roth CW. Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation. Insect Biochemistry and Molecular Biology. 35: 799-814. PMID 15944077 DOI: 10.1016/J.Ibmb.2005.02.020 |
0.566 |
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| 2005 |
Quesneville H, Nouaud D, Anxolabehere D. Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element. Molecular Biology and Evolution. 22: 741-6. PMID 15574804 DOI: 10.1093/Molbev/Msi064 |
0.386 |
|
| 2004 |
Andrieu O, Fiston AS, Anxolabéhère D, Quesneville H. Detection of transposable elements by their compositional bias. Bmc Bioinformatics. 5: 94. PMID 15251040 DOI: 10.1186/1471-2105-5-94 |
0.483 |
|
| 2003 |
Quesneville H, Nouaud D, Anxolabéhère D. Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes. Journal of Molecular Evolution. 57: S50-9. PMID 15008403 DOI: 10.1007/S00239-003-0007-2 |
0.54 |
|
| 2003 |
Reiss D, Quesneville H, Nouaud D, Andrieu O, Anxolabehere D. Hoppel, a P-like element without introns: a P-element ancestral structure or a retrotranscription derivative? Molecular Biology and Evolution. 20: 869-79. PMID 12717001 DOI: 10.1093/Molbev/Msg090 |
0.414 |
|
| 2003 |
Nouaud D, Quesneville H, Anxolabéhère D. Recurrent exon shuffling between distant P-element families. Molecular Biology and Evolution. 20: 190-9. PMID 12598685 DOI: 10.1093/Molbev/Msg036 |
0.369 |
|
| 2001 |
Quesneville H, Anxolabéhère D. Genetic algorithm-based model of evolutionary dynamics of class II transposable elements. Journal of Theoretical Biology. 213: 21-30. PMID 11708852 DOI: 10.1006/Jtbi.2001.2401 |
0.4 |
|
| 1998 |
Quesneville H, Anxolabéhère D. Dynamics of transposable elements in metapopulations: a model of P element invasion in Drosophila. Theoretical Population Biology. 54: 175-93. PMID 9733658 DOI: 10.1006/Tpbi.1997.1353 |
0.33 |
|
| 1997 |
Quesneville H, Anxolabéhère D. A simulation of P element horizontal transfer in Drosophila. Genetica. 100: 295-307. PMID 9440282 DOI: 10.1023/A:1018362402815 |
0.375 |
|
| 1994 |
Quesneville H, Katz M, Anxolabehere D. Can transposable element copy number distribution parameters be estimates from natural populations of Drosophila melanogaster? Journal of Evolutionary Biology. 7: 13-28. DOI: 10.1046/J.1420-9101.1994.7010013.X |
0.302 |
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