Daoning Zhang, Ph.D. - Publications

Affiliations: 
2004 South Dakota State University, Brookings, SD, United States 
Area:
Biochemistry, Molecular Biology

7/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Boughton AJ, Zhang D, Singh RK, Fushman D. Polyubiquitin and ubiquitin-like signals share common recognition sites on proteasomal subunit Rpn1. The Journal of Biological Chemistry. 100450. PMID 33617881 DOI: 10.1016/j.jbc.2021.100450  0.356
2014 Krutauz D, Reis N, Nakasone MA, Siman P, Zhang D, Kirkpatrick DS, Gygi SP, Brik A, Fushman D, Glickman MH. Extended ubiquitin species are protein-based DUB inhibitors. Nature Chemical Biology. 10: 664-70. PMID 24997605 DOI: 10.1038/Nchembio.1574  0.385
2013 Zhang D, Tugarinov V. Accurate measurements of the effects of deuteration at backbone amide positions on the chemical shifts of ¹⁵N, ¹³Cα, ¹³Cβ, ¹³CO and ¹Hα nuclei in proteins. Journal of Biomolecular Nmr. 56: 169-82. PMID 23612994 DOI: 10.1007/s10858-013-9733-y  0.334
2012 Lai MY, Zhang D, Laronde-Leblanc N, Fushman D. Structural and biochemical studies of the open state of Lys48-linked diubiquitin. Biochimica Et Biophysica Acta. 1823: 2046-56. PMID 22542781 DOI: 10.1016/J.Bbamcr.2012.04.003  0.312
2008 Zhang D, Raasi S, Fushman D. Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains. Journal of Molecular Biology. 377: 162-80. PMID 18241885 DOI: 10.1016/J.Jmb.2007.12.029  0.348
2007 Zhang D, Halaweish FT. Isolation and characterization of ribosome-inactivating proteins from Cucurbitaceae. Chemistry & Biodiversity. 4: 431-42. PMID 17372945 DOI: 10.1002/Cbdv.200790035  0.477
2003 Zhang D, Halaweish FT. Isolation and identification of foetidissimin: a novel ribosome-inactivating protein from Cucurbita Foetidissima Plant Science. 164: 387-393. DOI: 10.1016/S0168-9452(02)00425-9  0.425
Low-probability matches (unlikely to be authored by this person)
2008 Chen T, Zhang D, Matiuhin Y, Glickman M, Fushman D. 1H, 13C, and 15N resonance assignment of the ubiquitin-like domain from Dsk2p. Biomolecular Nmr Assignments. 2: 147-9. PMID 19636891 DOI: 10.1007/S12104-008-9107-7  0.253
2015 Nowicka U, Zhang D, Walker O, Krutauz D, Castañeda CA, Chaturvedi A, Chen TY, Reis N, Glickman MH, Fushman D. DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin. Structure (London, England : 1993). 23: 542-57. PMID 25703377 DOI: 10.1016/J.Str.2015.01.010  0.245
2017 Nakasone MA, Lewis TA, Walker O, Thakur A, Mansour W, Castañeda CA, Goeckeler-Fried JL, Parlati F, Chou TF, Hayat O, Zhang D, Camara CM, Bonn SM, Nowicka UK, Krueger S, et al. Structural Basis for the Inhibitory Effects of Ubistatins in the Ubiquitin-Proteasome Pathway. Structure (London, England : 1993). PMID 29153505 DOI: 10.1016/J.Str.2017.10.007  0.223
2008 Guo C, Zhang D, Tugarinov V. An NMR experiment for simultaneous TROSY-based detection of amide and methyl groups in large proteins. Journal of the American Chemical Society. 130: 10872-3. PMID 18651738 DOI: 10.1021/ja8036178  0.223
2009 Zhang D, Chen T, Ziv I, Rosenzweig R, Matiuhin Y, Bronner V, Glickman MH, Fushman D. Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor. Molecular Cell. 36: 1018-33. PMID 20064467 DOI: 10.1016/J.Molcel.2009.11.012  0.216
2012 Rosenzweig R, Bronner V, Zhang D, Fushman D, Glickman MH. Rpn1 and Rpn2 coordinate ubiquitin processing factors at proteasome. The Journal of Biological Chemistry. 287: 14659-71. PMID 22318722 DOI: 10.1074/Jbc.M111.316323  0.21
2014 Chou ST, Hom K, Zhang D, Leng Q, Tricoli LJ, Hustedt JM, Lee A, Shapiro MJ, Seog J, Kahn JD, Mixson AJ. Enhanced silencing and stabilization of siRNA polyplexes by histidine-mediated hydrogen bonds. Biomaterials. 35: 846-55. PMID 24161165 DOI: 10.1016/J.Biomaterials.2013.10.019  0.19
2016 Chojnacki M, Zhang D, Talarowska M, Gałecki P, Szemraj J, Fushman D, Nakasone MA. Characterizing polyubiquitinated forms of the neurodegenerative ubiquitin mutant UBB(+1). Febs Letters. PMID 27861798 DOI: 10.1002/1873-3468.12484  0.177
2013 Kovach IM, Kakalis L, Jordan F, Zhang D. Proton bridging in the interactions of thrombin with hirudin and its mimics. Biochemistry. 52: 2472-81. PMID 23517305 DOI: 10.1021/Bi301625A  0.162
2005 Zhang D, Kovach IM. Full and partial deuterium solvent isotope effect studies of alpha-thrombin-catalyzed reactions of natural substrates. Journal of the American Chemical Society. 127: 3760-6. PMID 15771510 DOI: 10.1021/ja043258o  0.136
2018 Chu B, Zhang D, Hwang W, Paukstelis PJ. Crystal structure of a tetrameric DNA fold-back quadruplex. Journal of the American Chemical Society. PMID 30384604 DOI: 10.1021/jacs.8b10153  0.131
2006 Zhang D, Kovach IM. Deuterium solvent isotope effect and proton-inventory studies of factor Xa-catalyzed reactions. Biochemistry. 45: 14175-82. PMID 17115712 DOI: 10.1021/bi061218m  0.129
2015 Saoji M, Zhang D, Paukstelis PJ. Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers. 103: 618-26. PMID 26015367 DOI: 10.1002/bip.22688  0.109
2008 Zhang D, Kovach IM, Sheehy JP. Locating the rate-determining step(s) for three-step hydrolase-catalyzed reactions with DYNAFIT. Biochimica Et Biophysica Acta. 1784: 827-33. PMID 18342021 DOI: 10.1016/j.bbapap.2008.02.004  0.107
2019 Chu B, Zhang D, Paukstelis PJ. A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Research. PMID 31724696 DOI: 10.1093/Nar/Gkz1008  0.098
2022 She J, Du M, Xu Z, Jin Y, Li Y, Zhang D, Tao C, Chen J, Wang J, Yang E. The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites. Genome Biology. 23: 231. PMID 36329469 DOI: 10.1186/s13059-022-02804-w  0.074
2023 Song X, Zhang D, Zhao Z, Wang A. Multiple Red-brown Papules and Plaques on the Trunk and Extremities: A Quiz. Acta Dermato-Venereologica. 103: adv12419. PMID 37721357 DOI: 10.2340/actadv.v103.12419  0.039
2023 Gong XG, Wang LP, Rong G, Zhang DN, Zhang AY, Liu C. Effects of online mindfulness-based interventions on the mental health of university students: A systematic review and meta-analysis. Frontiers in Psychology. 14: 1073647. PMID 36844353 DOI: 10.3389/fpsyg.2023.1073647  0.019
2015 Tripathi S, Zhang D, Paukstelis PJ. An intercalation-locked parallel-stranded DNA tetraplex. Nucleic Acids Research. 43: 1937-44. PMID 25628357 DOI: 10.1093/nar/gkv033  0.018
2022 Li J, Zhou Q, Zhang D, Wang J, Yang L. Seasonal variation in the detection rate and all-cause in-hospital mortality of AKI in China: A nationwide cohort study. Frontiers in Public Health. 10: 947185. PMID 36262238 DOI: 10.3389/fpubh.2022.947185  0.01
2015 Chen WH, Zhao Y, Zeng CC, Zhang DN, Wang YP, Tang L, Zhang XM, Wang TF. Pain-Induced Pulsograph Changes in Patients with Primary Dysmenorrhea: A Pilot Study. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 385136. PMID 26495011 DOI: 10.1155/2015/385136  0.01
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