| Year |
Citation |
Score |
| 2020 |
Phu L, Rose CM, Tea JS, Wall CE, Verschueren E, Cheung TK, Kirkpatrick DS, Bingol B. Dynamic Regulation of Mitochondrial Import by the Ubiquitin System. Molecular Cell. 77: 1107-1123.e10. PMID 32142684 DOI: 10.1016/J.Molcel.2020.02.012 |
0.371 |
|
| 2020 |
Budayeva HG, Kirkpatrick DS. Monitoring protein communities and their responses to therapeutics. Nature Reviews. Drug Discovery. PMID 32139903 DOI: 10.1038/S41573-020-0063-Y |
0.367 |
|
| 2020 |
Vogl AM, Phu L, Becerra R, Giusti SA, Verschueren E, Hinkle TB, Bordenave MD, Adrian M, Heidersbach A, Yankilevich P, Stefani FD, Wurst W, Hoogenraad CC, Kirkpatrick DS, Refojo D, et al. Global site-specific neddylation profiling reveals that NEDDylated cofilin regulates actin dynamics. Nature Structural & Molecular Biology. PMID 32015554 DOI: 10.1038/S41594-019-0370-3 |
0.386 |
|
| 2020 |
Cho KF, Ma TP, Rose CM, Kirkpatrick DS, Yu K, Blake RA. Chaperone mediated detection of small molecule target binding in cells. Nature Communications. 11: 465. PMID 31974362 DOI: 10.1038/S41467-019-14033-0 |
0.359 |
|
| 2020 |
Reichermeier KM, Straube R, Reitsma JM, Sweredoski MJ, Rose CM, Moradian A, den Besten W, Hinkle T, Verschueren E, Petzold G, Thomä NH, Wertz IE, Deshaies RJ, Kirkpatrick DS. PIKES Analysis Reveals Response to Degraders and Key Regulatory Mechanisms of the CRL4 Network. Molecular Cell. PMID 31973889 DOI: 10.1016/J.Molcel.2019.12.013 |
0.377 |
|
| 2020 |
Berlin M, Cantley J, Wang J, Bookbinder M, Cadelina G, Chan E, Chen H, Chen X, Davenport K, Fernando T, Gordon D, Hamman B, Haskell R, Ishchenko A, Kirkpatrick DS, et al. Abstract 5687: Selective, chemically-induced degradation of BRM (SMARCA2) enables in vivo efficacy in BRG1 (SMARCA4)-deficient xenograft tumor models Cancer Research. 80: 5687-5687. DOI: 10.1158/1538-7445.Am2020-5687 |
0.301 |
|
| 2019 |
Wall CE, Rose CM, Adrian M, Zeng YJ, Kirkpatrick DS, Bingol B. PPEF2 Opposes PINK1-Mediated Mitochondrial Quality Control by Dephosphorylating Ubiquitin. Cell Reports. 29: 3280-3292.e7. PMID 31801089 DOI: 10.1016/J.Celrep.2019.10.130 |
0.361 |
|
| 2019 |
Abed M, Verschueren E, Budayeva H, Liu P, Kirkpatrick DS, Reja R, Kummerfeld SK, Webster JD, Gierke S, Reichelt M, Anderson KR, Newman RJ, Roose-Girma M, Modrusan Z, Pektas H, et al. The Gag protein PEG10 binds to RNA and regulates trophoblast stem cell lineage specification. Plos One. 14: e0214110. PMID 30951545 DOI: 10.1371/Journal.Pone.0214110 |
0.306 |
|
| 2018 |
Matsumoto ML, Castellanos ER, Zeng YJ, Kirkpatrick DS. Interpreting the Language of Polyubiquitin with Linkage-Specific Antibodies and Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1844: 385-400. PMID 30242722 DOI: 10.1007/978-1-4939-8706-1_24 |
0.356 |
|
| 2018 |
Heger K, Wickliffe KE, Ndoja A, Zhang J, Murthy A, Dugger DL, Maltzman A, de Sousa E Melo F, Hung J, Zeng Y, Verschueren E, Kirkpatrick DS, Vucic D, Lee WP, Roose-Girma M, et al. OTULIN limits cell death and inflammation by deubiquitinating LUBAC. Nature. PMID 29950720 DOI: 10.1038/S41586-018-0256-2 |
0.372 |
|
| 2018 |
Goncharov T, Hedayati S, Mulvihill MM, Izrael-Tomasevic A, Zobel K, Jeet S, Fedorova AV, Eidenschenk C, deVoss J, Yu K, Shaw AS, Kirkpatrick DS, Fairbrother WJ, Deshayes K, Vucic D. Disruption of XIAP-RIP2 Association Blocks NOD2-Mediated Inflammatory Signaling. Molecular Cell. 69: 551-565.e7. PMID 29452636 DOI: 10.1016/J.Molcel.2018.01.016 |
0.332 |
|
| 2018 |
Cho KF, Rose C, Ma T, Kirkpatrick D, Blake RA. Abstract 775: HIPStA, a high-throughput alternative to CETSA® Cancer Research. 78: 775-775. DOI: 10.1158/1538-7445.Am2018-775 |
0.336 |
|
| 2017 |
Whiteley AM, Prado MA, Peng I, Abbas AR, Haley B, Paulo JA, Reichelt M, Katakam A, Sagolla M, Modrusan Z, Lee DY, Roose-Girma M, Kirkpatrick DS, McKenzie BS, Gygi SP, et al. Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins. Elife. 6. PMID 28933694 DOI: 10.7554/Elife.26435 |
0.4 |
|
| 2017 |
Dogan T, Gnad F, Chan J, Phu L, Young A, Chen MJ, Doll S, Stokes MP, Belvin M, Friedman LS, Kirkpatrick DS, Hoeflich KP, Hatzivassiliou G. Role of the E3 ubiquitin ligase RNF157 as a novel downstream effector linking PI3K and MAPK signaling to the cell cycle. The Journal of Biological Chemistry. PMID 28655764 DOI: 10.1074/Jbc.M117.792754 |
0.362 |
|
| 2017 |
Zhang Z, Newton K, Kummerfeld SK, Webster J, Kirkpatrick DS, Phu L, Eastham-Anderson J, Liu J, Lee WP, Wu J, Li H, Junttila MR, Dixit VM. Transcription factor Etv5 is essential for the maintenance of alveolar type II cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28351980 DOI: 10.1073/Pnas.1621177114 |
0.317 |
|
| 2017 |
Whiteley AM, Prado MA, Peng I, Abbas AR, Haley B, Paulo JA, Reichelt M, Katakam A, Sagolla M, Modrusan Z, Lee DY, Roose-Girma M, Kirkpatrick DS, McKenzie BS, Gygi SP, et al. Author response: Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins Elife. DOI: 10.7554/Elife.26435.026 |
0.309 |
|
| 2017 |
Song KW, Edgar KA, Kirkpatrick DS, Phu L, Schmidt S, Nannini M, Hong R, Cheng E, Crocker L, Young A, Sampath D, Friedman L. Abstract 146: The PI3K inhibitor, taselisib, has a unique mechanism of action that leads to enhanced potency in PIK3CA mutant models Cancer Research. 77: 146-146. DOI: 10.1158/1538-7445.Am2017-146 |
0.36 |
|
| 2016 |
de Almagro MC, Goncharov T, Izrael-Tomasevic A, Duttler S, Kist M, Varfolomeev E, Wu X, Lee WP, Murray J, Webster JD, Yu K, Kirkpatrick DS, Newton K, Vucic D. Coordinated ubiquitination and phosphorylation of RIP1 regulates necroptotic cell death. Cell Death and Differentiation. PMID 27518435 DOI: 10.1038/Cdd.2016.78 |
0.378 |
|
| 2016 |
Baughman JM, Rose CM, Kolumam G, Webster JD, Wilkerson EM, Merrill AE, Rhoads TW, Noubade R, Katavolos P, Lesch J, Stapleton DS, Rabaglia ME, Schueler KL, Asuncion R, Domeyer M, ... ... Kirkpatrick DS, et al. NeuCode Proteomics Reveals Bap1 Regulation of Metabolism. Cell Reports. 16: 583-595. PMID 27373151 DOI: 10.1016/J.Celrep.2016.05.096 |
0.333 |
|
| 2016 |
Gnad F, Wallin J, Edgar K, Doll S, Arnott D, Robillard L, Kirkpatrick DS, Stokes MP, Vijapurkar U, Hatzivassiliou G, Friedman LS, Belvin M. Quantitative phosphoproteomic analysis of the PI3K-regulated signaling network. Proteomics. PMID 27282143 DOI: 10.1002/Pmic.201600118 |
0.367 |
|
| 2016 |
Friedman L, Edgar K, Song K, Schmidt S, Kirkpatrick D, Phu L, Nannini M, Hong R, Cheng E, Crocker L, Young A, Sampath D. Abstract S6-04: The PI3K inhibitor, taselisib, has enhanced potency in PIK3CA mutant models through a unique mechanism of action Cancer Research. 77: 370-370. DOI: 10.1158/1538-7445.Sabcs16-S6-04 |
0.325 |
|
| 2015 |
Vartanian S, Ma TP, Lee J, Haverty PM, Kirkpatrick DS, Yu K, Stokoe D. Application of mass spectrometry profiling to establish brusatol as an inhibitor of global protein synthesis. Molecular & Cellular Proteomics : McP. PMID 26711467 DOI: 10.1074/Mcp.M115.055509 |
0.398 |
|
| 2015 |
Yu K, Phu L, Varfolomeev E, Bustos D, Vucic D, Kirkpatrick DS. Immunoaffinity enrichment coupled to quantitative mass spectrometry reveals ubiquitin-mediated signaling events. Journal of Molecular Biology. 427: 2121-34. PMID 25861760 DOI: 10.1016/J.Jmb.2015.03.018 |
0.396 |
|
| 2015 |
Sodhi JK, Wong S, Kirkpatrick DS, Liu L, Khojasteh SC, Hop CE, Barr JT, Jones JP, Halladay JS. A novel reaction mediated by human aldehyde oxidase: amide hydrolysis of GDC-0834. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 43: 908-15. PMID 25845827 DOI: 10.1124/Dmd.114.061804 |
0.318 |
|
| 2015 |
Cunningham CN, Baughman JM, Phu L, Tea JS, Yu C, Coons M, Kirkpatrick DS, Bingol B, Corn JE. USP30 and parkin homeostatically regulate atypical ubiquitin chains on mitochondria. Nature Cell Biology. 17: 160-9. PMID 25621951 DOI: 10.1038/Ncb3097 |
0.321 |
|
| 2015 |
Varfolomeev E, Izrael-Tomasevic A, Yu K, Bustos D, Goncharov T, Belmont LD, Masselot A, Bakalarski CE, Kirkpatrick DS, Vucic D. Ubiquitination profiling identifies sensitivity factors for IAP antagonist treatment. The Biochemical Journal. 466: 45-54. PMID 25423073 DOI: 10.1042/Bj20141195 |
0.404 |
|
| 2014 |
Dey A, Wu J, Kirkpatrick DS. Interrogation of in vivo protein-protein interactions using transgenic mouse models and stable isotope labeling. Methods in Molecular Biology (Clifton, N.J.). 1176: 179-90. PMID 25030928 DOI: 10.1007/978-1-4939-0992-6_15 |
0.372 |
|
| 2014 |
Krutauz D, Reis N, Nakasone MA, Siman P, Zhang D, Kirkpatrick DS, Gygi SP, Brik A, Fushman D, Glickman MH. Extended ubiquitin species are protein-based DUB inhibitors. Nature Chemical Biology. 10: 664-70. PMID 24997605 DOI: 10.1038/Nchembio.1574 |
0.391 |
|
| 2014 |
Bingol B, Tea JS, Phu L, Reichelt M, Bakalarski CE, Song Q, Foreman O, Kirkpatrick DS, Sheng M. The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy. Nature. 510: 370-5. PMID 24896179 DOI: 10.1038/Nature13418 |
0.305 |
|
| 2014 |
Anania VG, Pham VC, Huang X, Masselot A, Lill JR, Kirkpatrick DS. Peptide level immunoaffinity enrichment enhances ubiquitination site identification on individual proteins. Molecular & Cellular Proteomics : McP. 13: 145-56. PMID 24142993 DOI: 10.1074/Mcp.M113.031062 |
0.39 |
|
| 2013 |
Kirkpatrick DS, Bustos DJ, Dogan T, Chan J, Phu L, Young A, Friedman LS, Belvin M, Song Q, Bakalarski CE, Hoeflich KP. Phosphoproteomic characterization of DNA damage response in melanoma cells following MEK/PI3K dual inhibition. Proceedings of the National Academy of Sciences of the United States of America. 110: 19426-31. PMID 24218548 DOI: 10.1073/Pnas.1309473110 |
0.365 |
|
| 2013 |
Pozniak CD, Sengupta Ghosh A, Gogineni A, Hanson JE, Lee SH, Larson JL, Solanoy H, Bustos D, Li H, Ngu H, Jubb AM, Ayalon G, Wu J, Scearce-Levie K, Zhou Q, ... ... Kirkpatrick DS, et al. Dual leucine zipper kinase is required for excitotoxicity-induced neuronal degeneration. The Journal of Experimental Medicine. 210: 2553-67. PMID 24166713 DOI: 10.1084/Jem.20122832 |
0.336 |
|
| 2013 |
Huntwork-Rodriguez S, Wang B, Watkins T, Ghosh AS, Pozniak CD, Bustos D, Newton K, Kirkpatrick DS, Lewcock JW. JNK-mediated phosphorylation of DLK suppresses its ubiquitination to promote neuronal apoptosis. The Journal of Cell Biology. 202: 747-63. PMID 23979718 DOI: 10.1083/Jcb.201303066 |
0.33 |
|
| 2013 |
Phillips AH, Zhang Y, Cunningham CN, Zhou L, Forrest WF, Liu PS, Steffek M, Lee J, Tam C, Helgason E, Murray JM, Kirkpatrick DS, Fairbrother WJ, Corn JE. Conformational dynamics control ubiquitin-deubiquitinase interactions and influence in vivo signaling. Proceedings of the National Academy of Sciences of the United States of America. 110: 11379-84. PMID 23801757 DOI: 10.1073/Pnas.1302407110 |
0.347 |
|
| 2013 |
Goncharov T, Niessen K, de Almagro MC, Izrael-Tomasevic A, Fedorova AV, Varfolomeev E, Arnott D, Deshayes K, Kirkpatrick DS, Vucic D. OTUB1 modulates c-IAP1 stability to regulate signalling pathways. The Embo Journal. 32: 1103-14. PMID 23524849 DOI: 10.1038/Emboj.2013.62 |
0.375 |
|
| 2013 |
Anania VG, Bustos DJ, Lill JR, Kirkpatrick DS, Coscoy L. A Novel Peptide-Based SILAC Method to Identify the Posttranslational Modifications Provides Evidence for Unconventional Ubiquitination in the ER-Associated Degradation Pathway. International Journal of Proteomics. 2013: 857918. PMID 23431445 DOI: 10.1155/2013/857918 |
0.373 |
|
| 2013 |
Tran H, Bustos D, Yeh R, Rubinfeld B, Lam C, Shriver S, Zilberleyb I, Lee MW, Phu L, Sarkar AA, Zohn IE, Wertz IE, Kirkpatrick DS, Polakis P. HectD1 E3 ligase modifies adenomatous polyposis coli (APC) with polyubiquitin to promote the APC-axin interaction. The Journal of Biological Chemistry. 288: 3753-67. PMID 23277359 DOI: 10.1074/Jbc.M112.415240 |
0.34 |
|
| 2012 |
Dey A, Seshasayee D, Noubade R, French DM, Liu J, Chaurushiya MS, Kirkpatrick DS, Pham VC, Lill JR, Bakalarski CE, Wu J, Phu L, Katavolos P, LaFave LM, Abdel-Wahab O, et al. Loss of the tumor suppressor BAP1 causes myeloid transformation. Science (New York, N.Y.). 337: 1541-6. PMID 22878500 DOI: 10.1126/Science.1221711 |
0.309 |
|
| 2012 |
Bustos D, Bakalarski CE, Yang Y, Peng J, Kirkpatrick DS. Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment. Molecular & Cellular Proteomics : McP. 11: 1529-40. PMID 22729469 DOI: 10.1074/Mcp.R112.019117 |
0.333 |
|
| 2012 |
Pham VC, Pitti R, Anania VG, Bakalarski CE, Bustos D, Jhunjhunwala S, Phung QT, Yu K, Forrest WF, Kirkpatrick DS, Ashkenazi A, Lill JR. Complementary proteomic tools for the dissection of apoptotic proteolysis events. Journal of Proteome Research. 11: 2947-54. PMID 22432722 DOI: 10.1021/Pr300035K |
0.379 |
|
| 2012 |
Dimova NV, Hathaway NA, Lee BH, Kirkpatrick DS, Berkowitz ML, Gygi SP, Finley D, King RW. APC/C-mediated multiple monoubiquitylation provides an alternative degradation signal for cyclin B1. Nature Cell Biology. 14: 168-76. PMID 22286100 DOI: 10.1038/Ncb2425 |
0.344 |
|
| 2011 |
Dong KC, Helgason E, Yu C, Phu L, Arnott DP, Bosanac I, Compaan DM, Huang OW, Fedorova AV, Kirkpatrick DS, Hymowitz SG, Dueber EC. Preparation of distinct ubiquitin chain reagents of high purity and yield. Structure (London, England : 1993). 19: 1053-63. PMID 21827942 DOI: 10.1016/J.Str.2011.06.010 |
0.371 |
|
| 2011 |
Callow MG, Tran H, Phu L, Lau T, Lee J, Sandoval WN, Liu PS, Bheddah S, Tao J, Lill JR, Hongo JA, Davis D, Kirkpatrick DS, Polakis P, Costa M. Ubiquitin ligase RNF146 regulates tankyrase and Axin to promote Wnt signaling. Plos One. 6: e22595. PMID 21799911 DOI: 10.1371/Journal.Pone.0022595 |
0.425 |
|
| 2011 |
Huang X, Summers MK, Pham V, Lill JR, Liu J, Lee G, Kirkpatrick DS, Jackson PK, Fang G, Dixit VM. Deubiquitinase USP37 is activated by CDK2 to antagonize APC(CDH1) and promote S phase entry. Molecular Cell. 42: 511-23. PMID 21596315 DOI: 10.1016/J.Molcel.2011.03.027 |
0.325 |
|
| 2011 |
Ziv I, Matiuhin Y, Kirkpatrick DS, Erpapazoglou Z, Leon S, Pantazopoulou M, Kim W, Gygi SP, Haguenauer-Tsapis R, Reis N, Glickman MH, Kleifeld O. A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis. Molecular & Cellular Proteomics : McP. 10: M111.009753. PMID 21427232 DOI: 10.1074/Mcp.M111.009753 |
0.403 |
|
| 2011 |
Bosanac I, Phu L, Pan B, Zilberleyb I, Maurer B, Dixit VM, Hymowitz SG, Kirkpatrick DS. Modulation of K11-linkage formation by variable loop residues within UbcH5A. Journal of Molecular Biology. 408: 420-31. PMID 21396940 DOI: 10.1016/J.Jmb.2011.03.011 |
0.313 |
|
| 2011 |
Westlake CJ, Baye LM, Nachury MV, Wright KJ, Ervin KE, Phu L, Chalouni C, Beck JS, Kirkpatrick DS, Slusarski DC, Sheffield VC, Scheller RH, Jackson PK. Primary cilia membrane assembly is initiated by Rab11 and transport protein particle II (TRAPPII) complex-dependent trafficking of Rabin8 to the centrosome. Proceedings of the National Academy of Sciences of the United States of America. 108: 2759-64. PMID 21273506 DOI: 10.1073/Pnas.1018823108 |
0.317 |
|
| 2011 |
Chu CW, Hou F, Zhang J, Phu L, Loktev AV, Kirkpatrick DS, Jackson PK, Zhao Y, Zou H. A novel acetylation of β-tubulin by San modulates microtubule polymerization via down-regulating tubulin incorporation. Molecular Biology of the Cell. 22: 448-56. PMID 21177827 DOI: 10.1091/Mbc.E10-03-0203 |
0.306 |
|
| 2011 |
Phu L, Izrael-Tomasevic A, Matsumoto ML, Bustos D, Dynek JN, Fedorova AV, Bakalarski CE, Arnott D, Deshayes K, Dixit VM, Kelley RF, Vucic D, Kirkpatrick DS. Improved quantitative mass spectrometry methods for characterizing complex ubiquitin signals. Molecular & Cellular Proteomics : McP. 10: M110.003756. PMID 21048196 DOI: 10.1074/Mcp.M110.003756 |
0.36 |
|
| 2010 |
Dynek JN, Goncharov T, Dueber EC, Fedorova AV, Izrael-Tomasevic A, Phu L, Helgason E, Fairbrother WJ, Deshayes K, Kirkpatrick DS, Vucic D. c-IAP1 and UbcH5 promote K11-linked polyubiquitination of RIP1 in TNF signalling. The Embo Journal. 29: 4198-209. PMID 21113135 DOI: 10.1038/Emboj.2010.300 |
0.39 |
|
| 2010 |
Bosanac I, Wertz IE, Pan B, Yu C, Kusam S, Lam C, Phu L, Phung Q, Maurer B, Arnott D, Kirkpatrick DS, Dixit VM, Hymowitz SG. Ubiquitin binding to A20 ZnF4 is required for modulation of NF-κB signaling. Molecular Cell. 40: 548-57. PMID 21095585 DOI: 10.1016/J.Molcel.2010.10.009 |
0.319 |
|
| 2010 |
Matsumoto ML, Wickliffe KE, Dong KC, Yu C, Bosanac I, Bustos D, Phu L, Kirkpatrick DS, Hymowitz SG, Rape M, Kelley RF, Dixit VM. K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody. Molecular Cell. 39: 477-84. PMID 20655260 DOI: 10.1016/J.Molcel.2010.07.001 |
0.312 |
|
| 2010 |
Isasa M, Katz EJ, Kim W, Yugo V, González S, Kirkpatrick DS, Thomson TM, Finley D, Gygi SP, Crosas B. Monoubiquitination of RPN10 regulates substrate recruitment to the proteasome. Molecular Cell. 38: 733-45. PMID 20542005 DOI: 10.1016/J.Molcel.2010.05.001 |
0.39 |
|
| 2010 |
Ryu H, Al-Ani G, Deckert K, Kirkpatrick D, Gygi SP, Dasso M, Azuma Y. PIASy mediates SUMO-2/3 conjugation of poly(ADP-ribose) polymerase 1 (PARP1) on mitotic chromosomes. The Journal of Biological Chemistry. 285: 14415-23. PMID 20228053 DOI: 10.1074/Jbc.M109.074583 |
0.315 |
|
| 2009 |
Kirkpatrick DS, Dixit VM. GPS navigation of the protein-stability landscape. Nature Biotechnology. 27: 46-8. PMID 19131998 DOI: 10.1038/Nbt0109-46 |
0.328 |
|
| 2009 |
Blankenship JW, Varfolomeev E, Goncharov T, Fedorova AV, Kirkpatrick DS, Izrael-Tomasevic A, Phu L, Arnott D, Aghajan M, Zobel K, Bazan JF, Fairbrother WJ, Deshayes K, Vucic D. Ubiquitin binding modulates IAP antagonist-stimulated proteasomal degradation of c-IAP1 and c-IAP2(1). The Biochemical Journal. 417: 149-60. PMID 18939944 DOI: 10.1042/Bj20081885 |
0.311 |
|
| 2008 |
Matiuhin Y, Kirkpatrick DS, Ziv I, Kim W, Dakshinamurthy A, Kleifeld O, Gygi SP, Reis N, Glickman MH. Extraproteasomal Rpn10 restricts access of the polyubiquitin-binding protein Dsk2 to proteasome. Molecular Cell. 32: 415-25. PMID 18995839 DOI: 10.1016/J.Molcel.2008.10.011 |
0.403 |
|
| 2008 |
Sliter DA, Kubota K, Kirkpatrick DS, Alzayady KJ, Gygi SP, Wojcikiewicz RJ. Mass spectrometric analysis of type 1 inositol 1,4,5-trisphosphate receptor ubiquitination. The Journal of Biological Chemistry. 283: 35319-28. PMID 18955483 DOI: 10.1074/Jbc.M807288200 |
0.312 |
|
| 2008 |
Newton K, Matsumoto ML, Wertz IE, Kirkpatrick DS, Lill JR, Tan J, Dugger D, Gordon N, Sidhu SS, Fellouse FA, Komuves L, French DM, Ferrando RE, Lam C, Compaan D, et al. Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies. Cell. 134: 668-78. PMID 18724939 DOI: 10.1016/J.Cell.2008.07.039 |
0.366 |
|
| 2008 |
Wainszelbaum MJ, Charron AJ, Kong C, Kirkpatrick DS, Srikanth P, Barbieri MA, Gygi SP, Stahl PD. The hominoid-specific oncogene TBC1D3 activates Ras and modulates epidermal growth factor receptor signaling and trafficking. The Journal of Biological Chemistry. 283: 13233-42. PMID 18319245 DOI: 10.1074/Jbc.M800234200 |
0.321 |
|
| 2008 |
Tan JM, Wong ES, Kirkpatrick DS, Pletnikova O, Ko HS, Tay SP, Ho MW, Troncoso J, Gygi SP, Lee MK, Dawson VL, Dawson TM, Lim KL. Lysine 63-linked ubiquitination promotes the formation and autophagic clearance of protein inclusions associated with neurodegenerative diseases. Human Molecular Genetics. 17: 431-9. PMID 17981811 DOI: 10.1093/Hmg/Ddm320 |
0.36 |
|
| 2007 |
Ménétret JF, Schaletzky J, Clemons WM, Osborne AR, Skånland SS, Denison C, Gygi SP, Kirkpatrick DS, Park E, Ludtke SJ, Rapoport TA, Akey CW. Ribosome binding of a single copy of the SecY complex: implications for protein translocation. Molecular Cell. 28: 1083-92. PMID 18158904 DOI: 10.1016/J.Molcel.2007.10.034 |
0.301 |
|
| 2007 |
Kleijnen MF, Kirkpatrick DS, Gygi SP. The ubiquitin-proteasome system regulates membrane fusion of yeast vacuoles. The Embo Journal. 26: 275-87. PMID 17183369 DOI: 10.1038/Sj.Emboj.7601486 |
0.331 |
|
| 2006 |
Crosas B, Hanna J, Kirkpatrick DS, Zhang DP, Tone Y, Hathaway NA, Buecker C, Leggett DS, Schmidt M, King RW, Gygi SP, Finley D. Ubiquitin chains are remodeled at the proteasome by opposing ubiquitin ligase and deubiquitinating activities. Cell. 127: 1401-13. PMID 17190603 DOI: 10.1016/J.Cell.2006.09.051 |
0.37 |
|
| 2006 |
Kirkpatrick DS, Hathaway NA, Hanna J, Elsasser S, Rush J, Finley D, King RW, Gygi SP. Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology. Nature Cell Biology. 8: 700-10. PMID 16799550 DOI: 10.1038/Ncb1436 |
0.387 |
|
| 2006 |
Huang F, Kirkpatrick D, Jiang X, Gygi S, Sorkin A. Differential regulation of EGF receptor internalization and degradation by multiubiquitination within the kinase domain. Molecular Cell. 21: 737-48. PMID 16543144 DOI: 10.1016/J.Molcel.2006.02.018 |
0.312 |
|
| 2005 |
Kirkpatrick DS, Denison C, Gygi SP. Weighing in on ubiquitin: the expanding role of mass-spectrometry-based proteomics. Nature Cell Biology. 7: 750-7. PMID 16056266 DOI: 10.1038/Ncb0805-750 |
0.374 |
|
| 2005 |
Kirkpatrick DS, Weldon SF, Tsaprailis G, Liebler DC, Gandolfi AJ. Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin. Proteomics. 5: 2104-11. PMID 15852347 DOI: 10.1002/Pmic.200401089 |
0.553 |
|
| 2005 |
Kirkpatrick DS, Gerber SA, Gygi SP. The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods (San Diego, Calif.). 35: 265-73. PMID 15722223 DOI: 10.1016/J.Ymeth.2004.08.018 |
0.346 |
|
| 2005 |
Denison C, Kirkpatrick DS, Gygi SP. Proteomic insights into ubiquitin and ubiquitin-like proteins. Current Opinion in Chemical Biology. 9: 69-75. PMID 15701456 DOI: 10.1016/J.Cbpa.2004.10.010 |
0.387 |
|
| 2004 |
Tanny JC, Kirkpatrick DS, Gerber SA, Gygi SP, Moazed D. Budding yeast silencing complexes and regulation of Sir2 activity by protein-protein interactions. Molecular and Cellular Biology. 24: 6931-46. PMID 15282295 DOI: 10.1128/Mcb.24.16.6931-6946.2004 |
0.347 |
|
| 2003 |
Catania JM, Parrish AR, Kirkpatrick DS, Chitkara M, Bowden GT, Henderson CJ, Wolf CR, Clark AJ, Brendel K, Fisher RL, Gandolfi AJ. Precision-cut tissue slices from transgenic mice as an in vitro toxicology system. Toxicology in Vitro : An International Journal Published in Association With Bibra. 17: 201-5. PMID 12650674 DOI: 10.1016/S0887-2333(03)00004-3 |
0.691 |
|
| 2003 |
Kirkpatrick DS, Dale KV, Catania JM, Gandolfi AJ. Low-level arsenite causes accumulation of ubiquitinated proteins in rabbit renal cortical slices and HEK293 cells. Toxicology and Applied Pharmacology. 186: 101-9. PMID 12639501 DOI: 10.1016/S0041-008X(02)00019-4 |
0.721 |
|
| 2003 |
Kirkpatrick D, Dale K, Catania J, Gandolfi A. Erratum to “low-level arsenite causes accumulation of ubiquitinated proteins in rabbit renal cortical slices and hek923 cells” [toxicol. appl. pharmacol. 186 (2003) 101–109]☆ Toxicology and Applied Pharmacology. 193: 393. DOI: 10.1016/J.Taap.2003.08.007 |
0.709 |
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