| Year |
Citation |
Score |
| 2023 |
Berenson A, Lane R, Soto-Ugaldi LF, Patel M, Ciausu C, Li Z, Chen Y, Shah S, Santoso C, Liu X, Spirohn K, Hao T, Hill DE, Vidal M, Fuxman Bass JI. Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors. Nature Communications. 14: 6570. PMID 37853017 DOI: 10.1038/s41467-023-42445-6 |
0.684 |
|
| 2023 |
Laval F, Coppin G, Twizere JC, Vidal M. -Leveraging Yeast for Investigating Protein-Protein Interactions and Their Role in Human Disease. International Journal of Molecular Sciences. 24. PMID 37298131 DOI: 10.3390/ijms24119179 |
0.303 |
|
| 2023 |
Tang HW, Spirohn K, Hu Y, Hao T, Kovács IA, Gao Y, Binari R, Yang-Zhou D, Wan KH, Bader JS, Balcha D, Bian W, Booth BW, Coté AG, de Rouck S, ... ... Vidal M, et al. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Nature Communications. 14: 2162. PMID 37061542 DOI: 10.1038/s41467-023-37876-0 |
0.399 |
|
| 2022 |
Helmy M, Mee M, Ranjan A, Hao T, Vidal M, Calderwood MA, Luck K, Bader GD. OpenPIP: An Open-source Platform for Hosting, Visualizing and Analyzing Protein Interaction Data. Journal of Molecular Biology. 434: 167603. PMID 35662469 DOI: 10.1016/j.jmb.2022.167603 |
0.333 |
|
| 2021 |
Cheng F, Zhao J, Wang Y, Lu W, Liu Z, Zhou Y, Martin WR, Wang R, Huang J, Hao T, Yue H, Ma J, Hou Y, Castrillon JA, Fang J, ... ... Vidal M, et al. Comprehensive characterization of protein-protein interactions perturbed by disease mutations. Nature Genetics. PMID 33558758 DOI: 10.1038/s41588-020-00774-y |
0.338 |
|
| 2020 |
Wierbowski SD, Vo TV, Falter-Braun P, Jobe TO, Kruse LH, Wei X, Liang J, Meyer MJ, Akturk N, Rivera-Erick CA, Cordero NA, Paramo MI, Shayhidin EE, Bertolotti M, Tippens ND, ... ... Vidal M, et al. A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 32398372 DOI: 10.1073/Pnas.1918068117 |
0.5 |
|
| 2020 |
Sheynkman GM, Tuttle KS, Laval F, Tseng E, Underwood JG, Yu L, Dong D, Smith ML, Sebra R, Willems L, Hao T, Calderwood MA, Hill DE, Vidal M. ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms. Nature Communications. 11: 2326. PMID 32393825 DOI: 10.1038/S41467-020-16174-Z |
0.409 |
|
| 2020 |
Kim JH, Seo Y, Jo M, Jeon H, Lee WH, Yachie N, Zhong Q, Vidal M, Roth FP, Suk K. Yeast-Based Genetic Interaction Analysis of Human Kinome. Cells. 9. PMID 32392905 DOI: 10.3390/Cells9051156 |
0.376 |
|
| 2020 |
Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Coté AG, Daley M, Deimling S, Desbuleux A, ... ... Vidal M, et al. A reference map of the human binary protein interactome. Nature. 580: 402-408. PMID 32296183 DOI: 10.1038/S41586-020-2188-X |
0.521 |
|
| 2020 |
Yadav A, Vidal M, Luck K. Precision medicine - networks to the rescue. Current Opinion in Biotechnology. 63: 177-189. PMID 32199228 DOI: 10.1016/J.Copbio.2020.02.005 |
0.371 |
|
| 2019 |
Choi SG, Olivet J, Cassonnet P, Vidalain PO, Luck K, Lambourne L, Spirohn K, Lemmens I, Dos Santos M, Demeret C, Jones L, Rangarajan S, Bian W, Coutant EP, Janin YL, ... ... Vidal M, et al. Maximizing binary interactome mapping with a minimal number of assays. Nature Communications. 10: 3907. PMID 31467278 DOI: 10.1038/S41467-019-11809-2 |
0.443 |
|
| 2019 |
Cheng F, Lu W, Liu C, Fang J, Hou Y, Handy DE, Wang R, Zhao Y, Yang Y, Huang J, Hill DE, Vidal M, Eng C, Loscalzo J. A genome-wide positioning systems network algorithm for in silico drug repurposing. Nature Communications. 10: 3476. PMID 31375661 DOI: 10.1038/S41467-019-10744-6 |
0.357 |
|
| 2019 |
Lee EJ, Kim N, Park JW, Kang KH, Kim WI, Sim NS, Jeong CS, Blackshaw S, Vidal M, Huh SO, Kim D, Lee JH, Kim JW. Global Analysis of Intercellular Homeodomain Protein Transfer. Cell Reports. 28: 712-722.e3. PMID 31315049 DOI: 10.1016/J.Celrep.2019.06.056 |
0.375 |
|
| 2019 |
Kovács IA, Luck K, Spirohn K, Wang Y, Pollis C, Schlabach S, Bian W, Kim DK, Kishore N, Hao T, Calderwood MA, Vidal M, Barabási AL. Network-based prediction of protein interactions. Nature Communications. 10: 1240. PMID 30886144 DOI: 10.1038/S41467-019-09177-Y |
0.475 |
|
| 2019 |
Alonso-López D, Campos-Laborie FJ, Gutiérrez MA, Lambourne L, Calderwood MA, Vidal M, De Las Rivas J. APID database: redefining protein-protein interaction experimental evidences and binary interactomes. Database : the Journal of Biological Databases and Curation. 2019. PMID 30715274 DOI: 10.1093/Database/Baz005 |
0.456 |
|
| 2019 |
Alonso-López D, Campos-Laborie FJ, Gutierrez-García MA, Lambourne L, Calderwood MA, Vidal M, Rivas JDL. Validation of protein-protein interactions in databases and resources: the need to identify interaction detection methods that provide binary or indirect experimental evidences F1000research. 8. DOI: 10.7490/F1000Research.1116543.1 |
0.434 |
|
| 2018 |
Choi SG, Richardson A, Lambourne L, Hill DE, Vidal M. Protein Interactomics by Two-Hybrid Methods. Methods in Molecular Biology (Clifton, N.J.). 1794: 1-14. PMID 29855947 DOI: 10.1007/978-1-4939-7871-7_1 |
0.492 |
|
| 2018 |
Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, ... ... Vidal M, et al. How many human proteoforms are there? Nature Chemical Biology. 14: 206-214. PMID 29443976 DOI: 10.1038/Nchembio.2576 |
0.441 |
|
| 2018 |
Martínez-Noël G, Luck K, Kühnle S, Desbuleux A, Szajner P, Galligan JT, Rodriguez D, Zheng L, Boyland K, Leclere F, Zhong Q, Hill DE, Vidal M, Howley PM. Network analysis of UBE3A/E6AP-associated proteins provides connections to several distinct cellular processes. Journal of Molecular Biology. PMID 29426014 DOI: 10.1016/J.Jmb.2018.01.021 |
0.416 |
|
| 2017 |
Weile J, Sun S, Cote AG, Knapp J, Verby M, Mellor JC, Wu Y, Pons C, Wong C, van Lieshout N, Yang F, Tasan M, Tan G, Yang S, Fowler DM, ... ... Vidal M, et al. A framework for exhaustively mapping functional missense variants. Molecular Systems Biology. 13: 957. PMID 29269382 DOI: 10.15252/Msb.20177908 |
0.468 |
|
| 2017 |
Ghadie MA, Lambourne L, Vidal M, Xia Y. Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing. Plos Computational Biology. 13: e1005717. PMID 28846689 DOI: 10.1371/Journal.Pcbi.1005717 |
0.447 |
|
| 2017 |
Jo M, Chung AY, Yachie N, Seo M, Jeon H, Nam Y, Seo Y, Kim E, Zhong Q, Vidal M, Park HC, Roth F, Suk K. Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target. Genome Research. PMID 28596290 DOI: 10.1101/Gr.211649.116 |
0.409 |
|
| 2017 |
Cafarelli TM, Desbuleux A, Wang Y, Choi SG, De Ridder D, Vidal M. Mapping, modeling, and characterization of protein-protein interactions on a proteomic scale. Current Opinion in Structural Biology. 44: 201-210. PMID 28575754 DOI: 10.1016/J.Sbi.2017.05.003 |
0.486 |
|
| 2017 |
Yao C, Joehanes R, Johnson AD, Huan T, Liu C, Freedman JE, Munson PJ, Hill DE, Vidal M, Levy D. Dynamic Role of trans Regulation of Gene Expression in Relation to Complex Traits. American Journal of Human Genetics. 100: 985-986. PMID 28575653 DOI: 10.1016/J.Ajhg.2017.05.002 |
0.331 |
|
| 2017 |
Yang F, Sun S, Tan G, Costanzo M, Hill DE, Vidal M, Andrews BJ, Boone C, Roth FP. Identifying pathogenicity of human variants via paralog-based yeast complementation. Plos Genetics. 13: e1006779. PMID 28542158 DOI: 10.1371/Journal.Pgen.1006779 |
0.41 |
|
| 2017 |
Luck K, Sheynkman GM, Zhang I, Vidal M. Proteome-Scale Human Interactomics. Trends in Biochemical Sciences. PMID 28284537 DOI: 10.1016/J.Tibs.2017.02.006 |
0.46 |
|
| 2017 |
Karras GI, Yi S, Sahni N, Fischer M, Xie J, Vidal M, D'Andrea AD, Whitesell L, Lindquist S. HSP90 Shapes the Consequences of Human Genetic Variation. Cell. PMID 28215707 DOI: 10.1016/J.Cell.2017.01.023 |
0.313 |
|
| 2017 |
Chung CY, Khurana V, Yi S, Sahni N, Loh KH, Auluck PK, Baru V, Udeshi ND, Freyzon Y, Carr SA, Hill DE, Vidal M, Ting AY, Lindquist S. In Situ Peroxidase Labeling and Mass-Spectrometry Connects Alpha-Synuclein Directly to Endocytic Trafficking and mRNA Metabolism in Neurons. Cell Systems. PMID 28131823 DOI: 10.1016/J.Cels.2017.01.002 |
0.355 |
|
| 2017 |
Khurana V, Peng J, Chung CY, Auluck PK, Fanning S, Tardiff DF, Bartels T, Koeva M, Eichhorn SW, Benyamini H, Lou Y, Nutter-Upham A, Baru V, Freyzon Y, Tuncbag N, ... ... Vidal M, et al. Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways. Cell Systems. PMID 28131822 DOI: 10.1016/J.Cels.2016.12.011 |
0.433 |
|
| 2016 |
Lievens S, Van der Heyden J, Masschaele D, De Ceuninck L, Petta I, Gupta S, De Puysseleir V, Vauthier V, Lemmens I, De Clercq D, Defever D, Vanderroost N, De Smet AS, Eyckerman S, Van Calenbergh S, ... ... Vidal M, et al. Proteome-scale binary interactomics in human cells. Molecular & Cellular Proteomics : McP. PMID 27803151 DOI: 10.1074/Mcp.M116.061994 |
0.441 |
|
| 2016 |
Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SC, Chen H, Ramachandran N, Altmann S, ... ... Vidal M, et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357687 DOI: 10.1073/Pnas.1603229113 |
0.464 |
|
| 2016 |
Rambout X, Detiffe C, Bruyr J, Mariavelle E, Cherkaoui M, Brohée S, Demoitié P, Lebrun M, Soin R, Lesage B, Guedri K, Beullens M, Bollen M, Farazi TA, Kettmann R, ... ... Vidal M, et al. The transcription factor ERG recruits CCR4-NOT to control mRNA decay and mitotic progression. Nature Structural & Molecular Biology. PMID 27273514 DOI: 10.1038/Nsmb.3243 |
0.333 |
|
| 2016 |
Vidal M. How much of the human protein interactome remains to be mapped? Science Signaling. 9: eg7. PMID 27165778 DOI: 10.1126/Scisignal.Aaf6030 |
0.444 |
|
| 2016 |
Zhong Q, Pevzner SJ, Hao T, Wang Y, Mosca R, Menche J, Taipale M, Taşan M, Fan C, Yang X, Haley P, Murray RR, Mer F, Gebreab F, Tam S, ... ... Vidal M, et al. An inter-species protein-protein interaction network across vast evolutionary distance. Molecular Systems Biology. 12: 865. PMID 27107014 DOI: 10.15252/Msb.20156484 |
0.429 |
|
| 2016 |
Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, ... ... Vidal M, et al. Pooled-matrix protein interaction screens using Barcode Fusion Genetics. Molecular Systems Biology. 12: 863. PMID 27107012 DOI: 10.15252/Msb.20156660 |
0.458 |
|
| 2016 |
Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, ... ... Vidal M, et al. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science (New York, N.Y.). 351: 1450-4. PMID 27013732 DOI: 10.1126/Science.Aad2257 |
0.342 |
|
| 2016 |
Sun S, Yang F, Tan G, Costanzo M, Oughtred R, Hirschman J, Theesfeld C, Bansal P, Sahni N, Yi S, Yu A, Tyagi T, Tie C, Hill DE, Vidal M, et al. An extended set of yeast-based functional assays accurately identifies human disease mutations. Genome Research. PMID 26975778 DOI: 10.1101/Gr.192526.115 |
0.372 |
|
| 2016 |
Yang X, Coulombe-Huntington J, Kang S, Sheynkman GM, Hao T, Richardson A, Sun S, Yang F, Shen YA, Murray RR, Spirohn K, Begg BE, Duran-Frigola M, MacWilliams A, Pevzner SJ, ... ... Vidal M, et al. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Cell. 164: 805-817. PMID 26871637 DOI: 10.1016/J.Cell.2016.01.029 |
0.52 |
|
| 2016 |
Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, ... ... Vidal M, et al. Pooled-matrix protein interaction screens using Barcode Fusion Genetics Molecular Systems Biology. 12. DOI: 10.15252/msb.20156660 |
0.351 |
|
| 2016 |
De Nicolo A, Haibe-Kains B, Taşan M, Cusick ME, Vidal M, Quackenbush J, Joukov V, Livingston DM. Analysis of BRCA1-related functional associations in sporadic triple negative breast cancer: A network-based approach. Journal of Clinical Oncology. 34: 1070-1070. DOI: 10.1200/Jco.2016.34.15_Suppl.1070 |
0.377 |
|
| 2016 |
Wiemann S, Pennacchio C, Hu Y, Hunter P, Harbers M, Amiet A, Bethel G, Busse M, Carninci P, Diekhans M, Dunham I, Hao T, Harper JW, Hayashizaki Y, Heil O, ... ... Vidal M, et al. The ORFeome Collaboration: A genome-scale human ORF-clone resource Nature Methods. 13: 191-192. DOI: 10.1038/Nmeth.3776 |
0.304 |
|
| 2015 |
Wang Y, Sahni N, Vidal M. Global Edgetic Rewiring in Cancer Networks. Cell Systems. 1: 251-253. PMID 27136053 DOI: 10.1016/J.Cels.2015.10.006 |
0.303 |
|
| 2015 |
Neupane M, Clark AP, Landini S, Birkbak NJ, Eklund AC, Lim E, Culhane AC, Barry WT, Schumacher SE, Beroukhim R, Szallasi Z, Vidal M, Hill DE, Silver DP. MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism that Mimics the Role of Activated RAS in Malignancy. Cancer Discovery. PMID 26546296 DOI: 10.1158/2159-8290.Cd-15-0341 |
0.303 |
|
| 2015 |
Fuxman Bass JI, Sahni N, Shrestha S, Garcia-Gonzalez A, Mori A, Bhat N, Yi S, Hill DE, Vidal M, Walhout AJ. Human gene-centered transcription factor networks for enhancers and disease variants. Cell. 161: 661-73. PMID 25910213 DOI: 10.1016/J.Cell.2015.03.003 |
0.804 |
|
| 2015 |
Sahni N, Yi S, Taipale M, Fuxman Bass JI, Coulombe-Huntington J, Yang F, Peng J, Weile J, Karras GI, Wang Y, Kovács IA, Kamburov A, Krykbaeva I, Lam MH, Tucker G, ... ... Vidal M, et al. Widespread macromolecular interaction perturbations in human genetic disorders. Cell. 161: 647-60. PMID 25910212 DOI: 10.1016/J.Cell.2015.04.013 |
0.803 |
|
| 2015 |
Yang F, Petsalaki E, Rolland T, Hill DE, Vidal M, Roth FP. Protein domain-level landscape of cancer-type-specific somatic mutations. Plos Computational Biology. 11: e1004147. PMID 25794154 DOI: 10.1371/Journal.Pcbi.1004147 |
0.325 |
|
| 2015 |
Menche J, Sharma A, Kitsak M, Ghiassian SD, Vidal M, Loscalzo J, Barabási AL. Disease networks. Uncovering disease-disease relationships through the incomplete interactome. Science (New York, N.Y.). 347: 1257601. PMID 25700523 DOI: 10.1126/Science.1257601 |
0.323 |
|
| 2015 |
Lin GN, Corominas R, Lemmens I, Yang X, Tavernier J, Hill DE, Vidal M, Sebat J, Iakoucheva LM. Spatiotemporal 16p11.2 protein network implicates cortical late mid-fetal brain development and KCTD13-Cul3-RhoA pathway in psychiatric diseases. Neuron. 85: 742-54. PMID 25695269 DOI: 10.1016/J.Neuron.2015.01.010 |
0.372 |
|
| 2015 |
Ta?an M, Musso G, Hao T, Vidal M, MacRae CA, Roth FP. Selecting causal genes from genome-wide association studies via functionally coherent subnetworks. Nature Methods. 12: 154-9. PMID 25532137 DOI: 10.1038/Nmeth.3215 |
0.4 |
|
| 2015 |
Silver DP, Neupane M, Clark AP, Vidal M, Hill DE. Abstract P4-05-04: MECP2 is a frequently amplified oncogene and potential therapeutic target in TNBC Cancer Research. 75. DOI: 10.1158/1538-7445.Sabcs14-P4-05-04 |
0.305 |
|
| 2015 |
Broyde J, Simpson D, Wah DA, Giorgi FM, Petrey D, Alvarez MJ, Silkov A, Lachmann A, Hill DE, Vidal M, Jackson P, Honig B, Sweet-Cordero A, Califano A. Abstract PR13: Systems and structural biology approaches to elucidate new effectors in KRAS mutant tumors Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-Pr13 |
0.437 |
|
| 2014 |
Vidal M, Fields S. The yeast two-hybrid assay: still finding connections after 25 years. Nature Methods. 11: 1203-6. PMID 25584376 DOI: 10.1038/Nmeth.3182 |
0.446 |
|
| 2014 |
Brehme M, Voisine C, Rolland T, Wachi S, Soper JH, Zhu Y, Orton K, Villella A, Garza D, Vidal M, Ge H, Morimoto RI. A chaperome subnetwork safeguards proteostasis in aging and neurodegenerative disease. Cell Reports. 9: 1135-50. PMID 25437566 DOI: 10.1016/J.Celrep.2014.09.042 |
0.547 |
|
| 2014 |
Rolland T, TaÅŸan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, Yi S, Lemmens I, Fontanillo C, Mosca R, Kamburov A, Ghiassian SD, Yang X, Ghamsari L, Balcha D, ... ... Vidal M, et al. A proteome-scale map of the human interactome network. Cell. 159: 1212-26. PMID 25416956 DOI: 10.1016/J.Cell.2014.10.050 |
0.435 |
|
| 2014 |
Gu L, Li C, Aach J, Hill DE, Vidal M, Church GM. Multiplex single-molecule interaction profiling of DNA-barcoded proteins. Nature. 515: 554-7. PMID 25252978 DOI: 10.1038/Nature13761 |
0.415 |
|
| 2014 |
Weßling R, Epple P, Altmann S, He Y, Yang L, Henz SR, McDonald N, Wiley K, Bader KC, Gläßer C, Mukhtar MS, Haigis S, Ghamsari L, Stephens AE, Ecker JR, ... Vidal M, et al. Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life. Cell Host & Microbe. 16: 364-75. PMID 25211078 DOI: 10.1016/J.Chom.2014.08.004 |
0.389 |
|
| 2014 |
Hill SJ, Rolland T, Adelmant G, Xia X, Owen MS, Dricot A, Zack TI, Sahni N, Jacob Y, Hao T, McKinney KM, Clark AP, Reyon D, Tsai SQ, Joung JK, ... ... Vidal M, et al. Systematic screening reveals a role for BRCA1 in the response to transcription-associated DNA damage. Genes & Development. 28: 1957-75. PMID 25184681 DOI: 10.1101/Gad.241620.114 |
0.391 |
|
| 2014 |
Corominas R, Yang X, Lin GN, Kang S, Shen Y, Ghamsari L, Broly M, Rodriguez M, Tam S, Trigg SA, Fan C, Yi S, Tasan M, Lemmens I, Kuang X, ... ... Vidal M, et al. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. Nature Communications. 5: 3650. PMID 24722188 DOI: 10.1038/Ncomms4650 |
0.425 |
|
| 2014 |
Dittmer TA, Sahni N, Kubben N, Hill DE, Vidal M, Burgess RC, Roukos V, Misteli T. Systematic identification of pathological lamin A interactors. Molecular Biology of the Cell. 25: 1493-510. PMID 24623722 DOI: 10.1091/Mbc.E14-02-0733 |
0.427 |
|
| 2014 |
Blaser BW, Li B, Tamplin OJ, Binder V, Prober D, Schier A, Vidal M, Zon LI. Identification of Secreted Factors with a Role in Hematopoietic Stem and Progenitor Cell Engraftment in the Developing Zebrafish Blood. 124: 4361-4361. DOI: 10.1182/Blood.V124.21.4361.4361 |
0.331 |
|
| 2014 |
Iakoucheva LM, Lin NG, Corominas R, Yang X, Hao T, Hill D, Vidal M. Poster #S138 SPATIO-TEMPORAL PROTEIN INTERACTION NETWORK DYNAMICS OF 16P11.2 GENES Schizophrenia Research. 153: S138. DOI: 10.1016/S0920-9964(14)70417-7 |
0.4 |
|
| 2013 |
Sahni N, Yi S, Zhong Q, Jailkhani N, Charloteaux B, Cusick ME, Vidal M. Edgotype: a fundamental link between genotype and phenotype. Current Opinion in Genetics & Development. 23: 649-57. PMID 24287335 DOI: 10.1016/J.Gde.2013.11.002 |
0.414 |
|
| 2013 |
Mehra A, Zahra A, Thompson V, Sirisaengtaksin N, Wells A, Porto M, Köster S, Penberthy K, Kubota Y, Dricot A, Rogan D, Vidal M, Hill DE, Bean AJ, Philips JA. Mycobacterium tuberculosis type VII secreted effector EsxH targets host ESCRT to impair trafficking. Plos Pathogens. 9: e1003734. PMID 24204276 DOI: 10.1371/Journal.Ppat.1003734 |
0.356 |
|
| 2013 |
Lambert JP, Ivosev G, Couzens AL, Larsen B, Taipale M, Lin ZY, Zhong Q, Lindquist S, Vidal M, Aebersold R, Pawson T, Bonner R, Tate S, Gingras AC. Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition. Nature Methods. 10: 1239-45. PMID 24162924 DOI: 10.1038/Nmeth.2702 |
0.433 |
|
| 2013 |
Xin X, Gfeller D, Cheng J, Tonikian R, Sun L, Guo A, Lopez L, Pavlenco A, Akintobi A, Zhang Y, Rual JF, Currell B, Seshagiri S, Hao T, Yang X, ... ... Vidal M, et al. SH3 interactome conserves general function over specific form. Molecular Systems Biology. 9: 652. PMID 23549480 DOI: 10.1038/Msb.2013.9 |
0.432 |
|
| 2012 |
Fine DA, Rozenblatt-Rosen O, Padi M, Korkhin A, James RL, Adelmant G, Yoon R, Guo L, Berrios C, Zhang Y, Calderwood MA, Velmurgan S, Cheng J, Marto JA, Hill DE, ... ... Vidal M, et al. Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor. Plos Pathogens. 8: e1002949. PMID 23093934 DOI: 10.1371/Journal.Ppat.1002949 |
0.42 |
|
| 2012 |
Lambert B, Vandeputte J, Remacle S, Bergiers I, Simonis N, Twizere JC, Vidal M, Rezsohazy R. Protein interactions of the transcription factor Hoxa1. Bmc Developmental Biology. 12: 29. PMID 23088713 DOI: 10.1186/1471-213X-12-29 |
0.415 |
|
| 2012 |
Neveu G, Cassonnet P, Vidalain PO, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L, Lotteau V, Rabourdin-Combe C, Travé G, Dricot A, Hill DE, ... Vidal M, et al. Comparative analysis of virus-host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods (San Diego, Calif.). 58: 349-59. PMID 22898364 DOI: 10.1016/J.Ymeth.2012.07.029 |
0.426 |
|
| 2012 |
Rozenblatt-Rosen O, Deo RC, Padi M, Adelmant G, Calderwood MA, Rolland T, Grace M, Dricot A, Askenazi M, Tavares M, Pevzner SJ, Abderazzaq F, Byrdsong D, Carvunis AR, Chen AA, ... ... Vidal M, et al. Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature. 487: 491-5. PMID 22810586 DOI: 10.1038/Nature11288 |
0.398 |
|
| 2012 |
Gulbahce N, Yan H, Dricot A, Padi M, Byrdsong D, Franchi R, Lee DS, Rozenblatt-Rosen O, Mar JC, Calderwood MA, Baldwin A, Zhao B, Santhanam B, Braun P, Simonis N, ... ... Vidal M, et al. Viral perturbations of host networks reflect disease etiology. Plos Computational Biology. 8: e1002531. PMID 22761553 DOI: 10.1371/Journal.Pcbi.1002531 |
0.332 |
|
| 2012 |
Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA, Simonis N, Charloteaux B, Hidalgo CA, Barbette J, Santhanam B, Brar GA, Weissman JS, Regev A, Thierry-Mieg N, Cusick ME, ... Vidal M, et al. Proto-genes and de novo gene birth. Nature. 487: 370-4. PMID 22722833 DOI: 10.1038/Nature11184 |
0.737 |
|
| 2012 |
Simonis N, Rual JF, Lemmens I, Boxus M, Hirozane-Kishikawa T, Gatot JS, Dricot A, Hao T, Vertommen D, Legros S, Daakour S, Klitgord N, Martin M, Willaert JF, Dequiedt F, ... ... Vidal M, et al. Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses. Retrovirology. 9: 26. PMID 22458338 DOI: 10.1186/1742-4690-9-26 |
0.409 |
|
| 2012 |
Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM, Howald C, Foissac S, Ucla C, Chrast J, Ribeca P, Martin D, Murray RR, Yang X, Ghamsari L, ... ... Vidal M, et al. Evidence for transcript networks composed of chimeric RNAs in human cells. Plos One. 7: e28213. PMID 22238572 DOI: 10.1371/Journal.Pone.0028213 |
0.415 |
|
| 2012 |
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, Lichtervelde LD, Mul JD, Peut DVD, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, Smet ASD, ... ... Vidal M, et al. Erratum: A protein domain-based interactome network for C. elegans early embryogenesis (Cell (2008) 134 (534-545)) Cell. 151. DOI: 10.1016/J.Cell.2012.11.042 |
0.717 |
|
| 2011 |
Charloteaux B, Zhong Q, Dreze M, Cusick ME, Hill DE, Vidal M. Protein-protein interactions and networks: forward and reverse edgetics. Methods in Molecular Biology (Clifton, N.J.). 759: 197-213. PMID 21863489 DOI: 10.1007/978-1-61779-173-4_12 |
0.465 |
|
| 2011 |
Schild-Prüfert K, Saito TT, Smolikov S, Gu Y, Hincapie M, Hill DE, Vidal M, McDonald K, Colaiácovo MP. Organization of the synaptonemal complex during meiosis in Caenorhabditis elegans. Genetics. 189: 411-21. PMID 21840865 DOI: 10.1534/Genetics.111.132431 |
0.394 |
|
| 2011 |
Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, Pevzner SJ, Donovan SE, Ghamsari L, Santhanam B, Romero V, ... ... Vidal M, et al. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science (New York, N.Y.). 333: 596-601. PMID 21798943 DOI: 10.1126/Science.1203659 |
0.361 |
|
| 2011 |
Yang X, Boehm JS, Yang X, Salehi-Ashtiani K, Hao T, Shen Y, Lubonja R, Thomas SR, Alkan O, Bhimdi T, Green TM, Johannessen CM, Silver SJ, Nguyen C, Murray RR, ... ... Vidal M, et al. A public genome-scale lentiviral expression library of human ORFs. Nature Methods. 8: 659-61. PMID 21706014 DOI: 10.1038/Nmeth.1638 |
0.376 |
|
| 2011 |
Yu H, Tardivo L, Tam S, Weiner E, Gebreab F, Fan C, Svrzikapa N, Hirozane-Kishikawa T, Rietman E, Yang X, Sahalie J, Salehi-Ashtiani K, Hao T, Cusick ME, Hill DE, ... ... Vidal M, et al. Next-generation sequencing to generate interactome datasets. Nature Methods. 8: 478-80. PMID 21516116 DOI: 10.1038/Nmeth.1597 |
0.423 |
|
| 2011 |
Vidal M, Cusick ME, Barabási AL. Interactome networks and human disease. Cell. 144: 986-98. PMID 21414488 DOI: 10.1016/J.Cell.2011.02.016 |
0.326 |
|
| 2011 |
Suzuki Y, St Onge RP, Mani R, King OD, Heilbut A, Labunskyy VM, Chen W, Pham L, Zhang LV, Tong AH, Nislow C, Giaever G, Gladyshev VN, Vidal M, Schow P, et al. Knocking out multigene redundancies via cycles of sexual assortment and fluorescence selection. Nature Methods. 8: 159-64. PMID 21217751 DOI: 10.1038/Nmeth.1550 |
0.365 |
|
| 2010 |
Brehme M, Vidal M. A global protein-lipid interactome map. Molecular Systems Biology. 6: 443. PMID 21119635 DOI: 10.1038/Msb.2010.100 |
0.428 |
|
| 2010 |
Dreze M, Monachello D, Lurin C, Cusick ME, Hill DE, Vidal M, Braun P. High-quality binary interactome mapping. Methods in Enzymology. 470: 281-315. PMID 20946815 DOI: 10.1016/S0076-6879(10)70012-4 |
0.427 |
|
| 2010 |
Heard E, Tishkoff S, Todd JA, Vidal M, Wagner GP, Wang J, Weigel D, Young R. Ten years of genetics and genomics: what have we achieved and where are we heading? Nature Reviews. Genetics. 11: 723-33. PMID 20820184 DOI: 10.1038/Nrg2878 |
0.318 |
|
| 2010 |
Yan H, Venkatesan K, Beaver JE, Klitgord N, Yildirim MA, Hao T, Hill DE, Cusick ME, Perrimon N, Roth FP, Vidal M. A genome-wide gene function prediction resource for Drosophila melanogaster. Plos One. 5: e12139. PMID 20711346 DOI: 10.1371/Journal.Pone.0012139 |
0.726 |
|
| 2010 |
Wang J, Robida-Stubbs S, Tullet JM, Rual JF, Vidal M, Blackwell TK. RNAi screening implicates a SKN-1-dependent transcriptional response in stress resistance and longevity deriving from translation inhibition. Plos Genetics. 6. PMID 20700440 DOI: 10.1371/Journal.Pgen.1001048 |
0.346 |
|
| 2010 |
Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak SD, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins TT, et al. The landscape of C. elegans 3′UTRs Science. 329: 432-435. PMID 20522740 DOI: 10.1126/Science.1191244 |
0.379 |
|
| 2010 |
Pilot-Storck F, Chopin E, Rual JF, Baudot A, Dobrokhotov P, Robinson-Rechavi M, Brun C, Cusick ME, Hill DE, Schaeffer L, Vidal M, Goillot E. Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase kinase-3 interactor. Molecular & Cellular Proteomics : McP. 9: 1578-93. PMID 20368287 DOI: 10.1074/Mcp.M900568-Mcp200 |
0.321 |
|
| 2010 |
Gómez-Baldó L, Schmidt S, Maxwell CA, Bonifaci N, Gabaldón T, Vidalain PO, Senapedis W, Kletke A, Rosing M, Barnekow A, Rottapel R, Capellá G, Vidal M, Astrinidis A, Piekorz RP, et al. TACC3-TSC2 maintains nuclear envelope structure and controls cell division. Cell Cycle (Georgetown, Tex.). 9: 1143-55. PMID 20237422 DOI: 10.4161/Cc.9.6.11018 |
0.346 |
|
| 2010 |
Gulbahce N, Yan H, Vidal M, Barabasi A. Viral Disease Networks Biophysical Journal. 98: 196a. DOI: 10.1016/J.Bpj.2009.12.1040 |
0.397 |
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| 2009 |
Vidal M. A unifying view of 21st century systems biology. Febs Letters. 583: 3891-4. PMID 19913537 DOI: 10.1016/J.Febslet.2009.11.024 |
0.379 |
|
| 2009 |
Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, Klitgord N, Tam S, Yu H, Venkatesan K, Mou D, Swearingen V, Yildirim MA, Yan H, Dricot A, Szeto D, ... ... Vidal M, et al. Edgetic perturbation models of human inherited disorders. Molecular Systems Biology. 5: 321. PMID 19888216 DOI: 10.1038/Msb.2009.80 |
0.731 |
|
| 2009 |
Dreze M, Charloteaux B, Milstein S, Vidalain PO, Yildirim MA, Zhong Q, Svrzikapa N, Romero V, Laloux G, Brasseur R, Vandenhaute J, Boxem M, Cusick ME, Hill DE, Vidal M. 'Edgetic' perturbation of a C. elegans BCL2 ortholog. Nature Methods. 6: 843-9. PMID 19855391 DOI: 10.1038/Nmeth.1394 |
0.746 |
|
| 2009 |
Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Currell B, Seshagiri S, Yu H, Winsor B, Vidal M, Gerstein MB, Bader GD, et al. Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. Plos Biology. 7: e1000218. PMID 19841731 DOI: 10.1371/Journal.Pbio.1000218 |
0.373 |
|
| 2009 |
Salehi-Ashtiani K, Lin C, Hao T, Shen Y, Szeto D, Yang X, Ghamsari L, Lee H, Fan C, Murray RR, Milstein S, Svrzikapa N, Cusick ME, Roth FP, Hill DE, ... Vidal M, et al. Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome. Genome Research. 19: 2334-42. PMID 19801531 DOI: 10.1101/Gr.098640.109 |
0.433 |
|
| 2009 |
De Nicolo A, Parisini E, Zhong Q, Dalla Palma M, Stoeckert KA, Domchek SM, Nathanson KL, Caligo MA, Vidal M, Cusick ME, Garber JE. Multimodal assessment of protein functional deficiency supports pathogenicity of BRCA1 p.V1688del. Cancer Research. 69: 7030-7. PMID 19706752 DOI: 10.1158/0008-5472.Can-09-1440 |
0.393 |
|
| 2009 |
Carvunis AR, Gomez E, Thierry-Mieg N, Trilling L, Vidal M. [Systems biology: from yesterday's concepts to tomorrow's discoveries]. MéDecine Sciences : M/S. 25: 578-84. PMID 19602354 DOI: 10.1051/Medsci/2009256-7578 |
0.325 |
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| 2009 |
Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, ... Vidal M, et al. Metabolic network analysis integrated with transcript verification for sequenced genomes. Nature Methods. 6: 589-92. PMID 19597503 DOI: 10.1038/Nmeth.1348 |
0.324 |
|
| 2009 |
Markson G, Kiel C, Hyde R, Brown S, Charalabous P, Bremm A, Semple J, Woodsmith J, Duley S, Salehi-Ashtiani K, Vidal M, Komander D, Serrano L, Lehner P, Sanderson CM. Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. Genome Research. 19: 1905-11. PMID 19549727 DOI: 10.1101/Gr.093963.109 |
0.349 |
|
| 2009 |
Xin X, Rual JF, Hirozane-Kishikawa T, Hill DE, Vidal M, Boone C, Thierry-Mieg N. Shifted Transversal Design smart-pooling for high coverage interactome mapping. Genome Research. 19: 1262-9. PMID 19447967 DOI: 10.1101/Gr.090019.108 |
0.326 |
|
| 2009 |
van der Voet M, Berends CW, Perreault A, Nguyen-Ngoc T, Gönczy P, Vidal M, Boxem M, van den Heuvel S. NuMA-related LIN-5, ASPM-1, calmodulin and dynein promote meiotic spindle rotation independently of cortical LIN-5/GPR/Galpha. Nature Cell Biology. 11: 269-77. PMID 19219036 DOI: 10.1038/Ncb1834 |
0.319 |
|
| 2009 |
Lievens S, Vanderroost N, Van der Heyden J, Gesellchen V, Vidal M, Tavernier J. Array MAPPIT: high-throughput interactome analysis in mammalian cells. Journal of Proteome Research. 8: 877-86. PMID 19159283 DOI: 10.1021/Pr8005167 |
0.486 |
|
| 2009 |
Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, ... ... Vidal M, et al. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nature Methods. 6: 47-54. PMID 19123269 DOI: 10.1038/Nmeth.1279 |
0.777 |
|
| 2009 |
Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, ... ... Vidal M, et al. Literature-curated protein interaction datasets. Nature Methods. 6: 39-46. PMID 19116613 DOI: 10.1038/Nmeth.1284 |
0.439 |
|
| 2009 |
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, ... ... Vidal M, et al. An empirical framework for binary interactome mapping. Nature Methods. 6: 83-90. PMID 19060904 DOI: 10.1038/Nmeth.1280 |
0.746 |
|
| 2009 |
Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, Sahalie JM, Murray RR, Roncari L, de Smet AS, Venkatesan K, Rual JF, Vandenhaute J, Cusick ME, Pawson T, ... ... Vidal M, et al. An experimentally derived confidence score for binary protein-protein interactions. Nature Methods. 6: 91-7. PMID 19060903 DOI: 10.1038/Nmeth.1281 |
0.463 |
|
| 2009 |
Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G. VirusMINT: a viral protein interaction database. Nucleic Acids Research. 37: D669-73. PMID 18974184 DOI: 10.1093/Nar/Gkn739 |
0.368 |
|
| 2009 |
Boehm JS, Cowley G, Weir B, Barretina J, Luo B, Cheung HW, Rusin S, Scott J, Derr A, Tsherniak A, Gopalakrishnan S, Tamayo P, Barbie D, Yang X, Piqani B, ... ... Vidal M, et al. Abstract A23: An integrated platform for the functional annotation of the cancer genome Cancer Research. 69. DOI: 10.1158/0008-5472.Fbcr09-A23 |
0.383 |
|
| 2009 |
Dreze M, Charloteaux B, Milstein S, Vidalain P, Yildirim MA, Zhong Q, Svrzikapa N, Romero V, Laloux G, Brasseur R, Vandenhaute J, Boxem M, Cusick ME, Hill DE, Vidal M. Erratum: 'Edgetic' perturbation of a C. elegans BCL2 ortholog Nature Methods. 6: 935-935. DOI: 10.1038/Nmeth1209-935B |
0.656 |
|
| 2009 |
Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis A, Simonis N, Rual J, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, ... ... Vidal M, et al. Addendum: Literature-curated protein interaction datasets Nature Methods. 6: 934-935. DOI: 10.1038/Nmeth1209-934 |
0.424 |
|
| 2008 |
de Chassey B, Navratil V, Tafforeau L, Hiet MS, Aublin-Gex A, Agaugué S, Meiffren G, Pradezynski F, Faria BF, Chantier T, Le Breton M, Pellet J, Davoust N, Mangeot PE, Chaboud A, ... ... Vidal M, et al. Hepatitis C virus infection protein network. Molecular Systems Biology. 4: 230. PMID 18985028 DOI: 10.1016/J.Ijid.2008.05.437 |
0.388 |
|
| 2008 |
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, ... ... Vidal M, et al. High-quality binary protein interaction map of the yeast interactome network. Science (New York, N.Y.). 322: 104-10. PMID 18719252 DOI: 10.1126/Science.1158684 |
0.747 |
|
| 2008 |
Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, ... ... Vidal M, et al. A protein domain-based interactome network for C. elegans early embryogenesis. Cell. 134: 534-45. PMID 18692475 DOI: 10.1016/J.Cell.2008.07.009 |
0.759 |
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| 2008 |
Li S, Liu C, Li N, Hao T, Han T, Hill DE, Vidal M, Lin JD. Genome-wide coactivation analysis of PGC-1alpha identifies BAF60a as a regulator of hepatic lipid metabolism. Cell Metabolism. 8: 105-17. PMID 18680712 DOI: 10.1016/J.Cmet.2008.06.013 |
0.316 |
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| 2008 |
Braun P, Rietman E, Vidal M. Networking metabolites and diseases. Proceedings of the National Academy of Sciences of the United States of America. 105: 9849-50. PMID 18632571 DOI: 10.1073/Pnas.0805644105 |
0.353 |
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| 2008 |
Pagliarini DJ, Calvo SE, Chang B, Sheth SA, Vafai SB, Ong SE, Walford GA, Sugiana C, Boneh A, Chen WK, Hill DE, Vidal M, Evans JG, Thorburn DR, Carr SA, et al. A mitochondrial protein compendium elucidates complex I disease biology. Cell. 134: 112-23. PMID 18614015 DOI: 10.1016/J.Cell.2008.06.016 |
0.387 |
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| 2008 |
Salehi-Ashtiani K, Yang X, Derti A, Tian W, Hao T, Lin C, Makowski K, Shen L, Murray RR, Szeto D, Tusneem N, Smith DR, Cusick ME, Hill DE, Roth FP, ... Vidal M, et al. Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing. Nature Methods. 5: 597-600. PMID 18552854 DOI: 10.1038/Nmeth.1224 |
0.322 |
|
| 2008 |
Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, ... Vidal M, et al. Revisiting the Saccharomyces cerevisiae predicted ORFeome. Genome Research. 18: 1294-303. PMID 18502943 DOI: 10.1101/Gr.076661.108 |
0.399 |
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| 2008 |
Djebali S, Kapranov P, Foissac S, Lagarde J, Reymond A, Ucla C, Wyss C, Drenkow J, Dumais E, Murray RR, Lin C, Szeto D, Denoeud F, Calvo M, Frankish A, ... ... Vidal M, et al. Efficient targeted transcript discovery via array-based normalization of RACE libraries. Nature Methods. 5: 629-35. PMID 18500348 DOI: 10.1038/Nmeth.1216 |
0.307 |
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| 2008 |
Yildirim MA, Vidal M. Systems engineering to systems biology. Molecular Systems Biology. 4: 185. PMID 18414486 DOI: 10.1038/Msb.2008.22 |
0.701 |
|
| 2007 |
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, ... ... Vidal M, et al. Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. Bmc Biology. 5: 44. PMID 17925023 DOI: 10.1186/1741-7007-5-44 |
0.372 |
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| 2007 |
Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, Elshamy WM, Rual JF, Levine D, Rozek LS, ... ... Vidal M, et al. Network modeling links breast cancer susceptibility and centrosome dysfunction. Nature Genetics. 39: 1338-49. PMID 17922014 DOI: 10.1038/Ng.2007.2 |
0.338 |
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| 2007 |
Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M. Drug-target network. Nature Biotechnology. 25: 1119-26. PMID 17921997 DOI: 10.1038/Nbt1338 |
0.702 |
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| 2007 |
Wang H, Segal E, Ben-Hur A, Li QR, Vidal M, Koller D. InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale. Genome Biology. 8: R192. PMID 17868464 DOI: 10.1186/Gb-2007-8-9-R192 |
0.408 |
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| 2007 |
Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, et al. The minimum information required for reporting a molecular interaction experiment (MIMIx). Nature Biotechnology. 25: 894-8. PMID 17687370 DOI: 10.1038/Nbt1324 |
0.33 |
|
| 2007 |
Simarro M, Mauger D, Rhee K, Pujana MA, Kedersha NL, Yamasaki S, Cusick ME, Vidal M, Garcia-Blanco MA, Anderson P. Fas-activated serine/threonine phosphoprotein (FAST) is a regulator of alternative splicing. Proceedings of the National Academy of Sciences of the United States of America. 104: 11370-5. PMID 17592127 DOI: 10.1073/Pnas.0704964104 |
0.332 |
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| 2007 |
Bertin N, Simonis N, Dupuy D, Cusick ME, Han JD, Fraser HB, Roth FP, Vidal M. Confirmation of organized modularity in the yeast interactome. Plos Biology. 5: e153. PMID 17564493 DOI: 10.1371/Journal.Pbio.0050153 |
0.353 |
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| 2007 |
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL. The human disease network. Proceedings of the National Academy of Sciences of the United States of America. 104: 8685-90. PMID 17502601 DOI: 10.1073/Pnas.0701361104 |
0.411 |
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| 2007 |
Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, ... ... Vidal M, et al. Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nature Biotechnology. 25: 663-8. PMID 17486083 DOI: 10.1038/Nbt1305 |
0.462 |
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| 2007 |
Calderwood MA, Venkatesan K, Xing L, Chase MR, Vazquez A, Holthaus AM, Ewence AE, Li N, Hirozane-Kishikawa T, Hill DE, Vidal M, Kieff E, Johannsen E. Epstein-Barr virus and virus human protein interaction maps. Proceedings of the National Academy of Sciences of the United States of America. 104: 7606-11. PMID 17446270 DOI: 10.1073/Pnas.0702332104 |
0.487 |
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| 2007 |
Ceron J, Rual JF, Chandra A, Dupuy D, Vidal M, van den Heuvel S. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Bmc Developmental Biology. 7: 30. PMID 17417969 DOI: 10.1186/1471-213X-7-30 |
0.381 |
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| 2007 |
Reece-Hoyes JS, Shingles J, Dupuy D, Grove CA, Walhout AJ, Vidal M, Hope IA. Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns. Bmc Genomics. 8: 27. PMID 17244357 DOI: 10.1186/1471-2164-8-27 |
0.66 |
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| 2007 |
Lamesch P, Li N, Milstein S, Fan C, Hao T, Szabo G, Hu Z, Venkatesan K, Bethel G, Martin P, Rogers J, Lawlor S, McLaren S, Dricot A, Borick H, ... ... Vidal M, et al. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Genomics. 89: 307-15. PMID 17207965 DOI: 10.1016/J.Ygeno.2006.11.012 |
0.358 |
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| 2007 |
Yu A, Rual JF, Tamai K, Harada Y, Vidal M, He X, Kirchhausen T. Association of Dishevelled with the clathrin AP-2 adaptor is required for Frizzled endocytosis and planar cell polarity signaling. Developmental Cell. 12: 129-41. PMID 17199046 DOI: 10.1016/J.Devcel.2006.10.015 |
0.301 |
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| 2007 |
Li J, Tewari M, Vidal M, Lee SS. The 14-3-3 protein FTT-2 regulates DAF-16 in Caenorhabditis elegans. Developmental Biology. 301: 82-91. PMID 17098225 DOI: 10.1016/J.Ydbio.2006.10.013 |
0.382 |
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| 2007 |
Braun P, Cusick ME, Vidal M. Erratum: Corrigendum: QUICKstep and GS-TAP: new moves for protein-interaction analysis Nature Methods. 4: 103-103. DOI: 10.1038/Nmeth0107-103 |
0.303 |
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| 2006 |
Piano F, Gunsalus KC, Hill DE, Vidal M. C. elegans network biology: a beginning. Wormbook : the Online Review of C. Elegans Biology. 1-20. PMID 18050437 DOI: 10.1895/Wormbook.1.118.1 |
0.417 |
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| 2006 |
Braun P, Cusick ME, Vidal M. QUICKstep and GS-TAP: new moves for protein-interaction analysis. Nature Methods. 3: 975-6. PMID 17117154 DOI: 10.1038/Nmeth1206-975 |
0.376 |
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| 2006 |
Kritikou EA, Milstein S, Vidalain PO, Lettre G, Bogan E, Doukoumetzidis K, Gray P, Chappell TG, Vidal M, Hengartner MO. C. elegans GLA-3 is a novel component of the MAP kinase MPK-1 signaling pathway required for germ cell survival. Genes & Development. 20: 2279-92. PMID 16912277 DOI: 10.1101/Gad.384506 |
0.364 |
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| 2006 |
Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, Uversky VN, Vidal M, Iakoucheva LM. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. Plos Computational Biology. 2: e100. PMID 16884331 DOI: 10.1371/Journal.Pcbi.0020100 |
0.368 |
|
| 2006 |
Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. Cell. 125: 801-14. PMID 16713569 DOI: 10.1016/J.Cell.2006.03.032 |
0.479 |
|
| 2006 |
Temple G, Lamesch P, Milstein S, Hill DE, Wagner L, Moore T, Vidal M. From genome to proteome: developing expression clone resources for the human genome. Human Molecular Genetics. 15: R31-43. PMID 16651367 DOI: 10.1093/Hmg/Ddl048 |
0.417 |
|
| 2005 |
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, ... ... Vidal M, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature. 437: 1173-8. PMID 16189514 DOI: 10.1038/Nature04209 |
0.492 |
|
| 2005 |
Cusick ME, Klitgord N, Vidal M, Hill DE. Interactome: gateway into systems biology. Human Molecular Genetics. 14: R171-81. PMID 16162640 DOI: 10.1093/Hmg/Ddi335 |
0.514 |
|
| 2005 |
Gillette WK, Esposito D, Frank PH, Zhou M, Yu LR, Jozwik C, Zhang X, McGowan B, Jacobowitz DM, Pollard HB, Hao T, Hill DE, Vidal M, Conrads TP, Veenstra TD, et al. Pooled ORF expression technology (POET): using proteomics to screen pools of open reading frames for protein expression. Molecular & Cellular Proteomics : McP. 4: 1647-52. PMID 16113400 DOI: 10.1074/Mcp.M500128-Mcp200 |
0.385 |
|
| 2005 |
Gunsalus KC, Ge H, Schetter AJ, Goldberg DS, Han JD, Hao T, Berriz GF, Bertin N, Huang J, Chuang LS, Li N, Mani R, Hyman AA, Sönnichsen B, Echeverri CJ, ... ... Vidal M, et al. Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. Nature. 436: 861-5. PMID 16094371 DOI: 10.1038/Nature03876 |
0.625 |
|
| 2005 |
Sieburth D, Ch'ng Q, Dybbs M, Tavazoie M, Kennedy S, Wang D, Dupuy D, Rual JF, Hill DE, Vidal M, Ruvkun G, Kaplan JM. Systematic analysis of genes required for synapse structure and function. Nature. 436: 510-7. PMID 16049479 DOI: 10.1038/Nature03809 |
0.363 |
|
| 2005 |
Davison EM, Harrison MM, Walhout AJ, Vidal M, Horvitz HR. lin-8, which antagonizes Caenorhabditis elegans Ras-mediated vulval induction, encodes a novel nuclear protein that interacts with the LIN-35 Rb protein. Genetics. 171: 1017-31. PMID 16020796 DOI: 10.1534/Genetics.104.034173 |
0.695 |
|
| 2005 |
Han JD, Dupuy D, Bertin N, Cusick ME, Vidal M. Effect of sampling on topology predictions of protein-protein interaction networks. Nature Biotechnology. 23: 839-44. PMID 16003372 DOI: 10.1038/Nbt1116 |
0.421 |
|
| 2005 |
Scholtens D, Vidal M, Gentleman R. Local modeling of global interactome networks. Bioinformatics (Oxford, England). 21: 3548-57. PMID 15998662 DOI: 10.1093/Bioinformatics/Bti567 |
0.402 |
|
| 2005 |
Caruso ME, Jenna S, Beaulne S, Lee EH, Bergeron A, Chauve C, Roby P, Rual JF, Hill DE, Vidal M, Bossé R, Chevet E. Biochemical clustering of monomeric GTPases of the Ras superfamily. Molecular & Cellular Proteomics : McP. 4: 936-44. PMID 15814614 DOI: 10.1074/Mcp.M500025-Mcp200 |
0.332 |
|
| 2005 |
Wei C, Lamesch P, Arumugam M, Rosenberg J, Hu P, Vidal M, Brent MR. Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions. Genome Research. 15: 577-82. PMID 15805498 DOI: 10.1101/Gr.3329005 |
0.367 |
|
| 2005 |
Kim JK, Gabel HW, Kamath RS, Tewari M, Pasquinelli A, Rual JF, Kennedy S, Dybbs M, Bertin N, Kaplan JM, Vidal M, Ruvkun G. Functional genomic analysis of RNA interference in C. elegans. Science (New York, N.Y.). 308: 1164-7. PMID 15790806 DOI: 10.1126/Science.1109267 |
0.371 |
|
| 2005 |
Fox RM, Von Stetina SE, Barlow SJ, Shaffer C, Olszewski KL, Moore JH, Dupuy D, Vidal M, Miller DM. A gene expression fingerprint of C. elegans embryonic motor neurons. Bmc Genomics. 6: 42. PMID 15780142 DOI: 10.1186/1471-2164-6-42 |
0.321 |
|
| 2005 |
Fernandez AG, Gunsalus KC, Huang J, Chuang LS, Ying N, Liang HL, Tang C, Schetter AJ, Zegar C, Rual JF, Hill DE, Reinke V, Vidal M, Piano F. New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones. Genome Research. 15: 250-9. PMID 15687288 DOI: 10.1101/Gr.3194805 |
0.395 |
|
| 2005 |
Jenna S, Caruso ME, Emadali A, Nguyên DT, Dominguez M, Li S, Roy R, Reboul J, Vidal M, Tzimas GN, Bossé R, Chevet E. Regulation of membrane trafficking by a novel Cdc42-related protein in Caenorhabditis elegans epithelial cells. Molecular Biology of the Cell. 16: 1629-39. PMID 15659649 DOI: 10.1091/Mbc.E04-08-0760 |
0.344 |
|
| 2005 |
Pujana M, Han J, Starita L, Tewari M, Ahn J, Assmann V, ElShamy W, Rual J, Gelman R, Gunsalus K, Greenberg R, Bohian B, Bertin N, Ayivi-Guedehoussou N, Nathanson K, ... ... Vidal M, et al. A model of the BRCA1/BRCA2 network Breast Cancer Research. 7: 1-1. DOI: 10.1186/Bcr1195 |
0.411 |
|
| 2004 |
Wong SL, Zhang LV, Tong AH, Li Z, Goldberg DS, King OD, Lesage G, Vidal M, Andrews B, Bussey H, Boone C, Roth FP. Combining biological networks to predict genetic interactions. Proceedings of the National Academy of Sciences of the United States of America. 101: 15682-7. PMID 15496468 DOI: 10.1073/Pnas.0406614101 |
0.459 |
|
| 2004 |
Dricot A, Rual JF, Lamesch P, Bertin N, Dupuy D, Hao T, Lambert C, Hallez R, Delroisse JM, Vandenhaute J, Lopez-Goñi I, Moriyon I, Garcia-Lobo JM, Sangari FJ, Macmillan AP, ... ... Vidal M, et al. Generation of the Brucella melitensis ORFeome version 1.1. Genome Research. 14: 2201-6. PMID 15489343 DOI: 10.1101/Gr.2456204 |
0.41 |
|
| 2004 |
Dupuy D, Li QR, Deplancke B, Boxem M, Hao T, Lamesch P, Sequerra R, Bosak S, Doucette-Stamm L, Hope IA, Hill DE, Walhout AJ, Vidal M. A first version of the Caenorhabditis elegans Promoterome. Genome Research. 14: 2169-75. PMID 15489340 DOI: 10.1101/Gr.2497604 |
0.77 |
|
| 2004 |
Rual JF, Ceron J, Koreth J, Hao T, Nicot AS, Hirozane-Kishikawa T, Vandenhaute J, Orkin SH, Hill DE, van den Heuvel S, Vidal M. Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. Genome Research. 14: 2162-8. PMID 15489339 DOI: 10.1101/Gr.2505604 |
0.335 |
|
| 2004 |
Rual JF, Hirozane-Kishikawa T, Hao T, Bertin N, Li S, Dricot A, Li N, Rosenberg J, Lamesch P, Vidalain PO, Clingingsmith TR, Hartley JL, Esposito D, Cheo D, Moore T, ... ... Vidal M, et al. Human ORFeome version 1.1: a platform for reverse proteomics. Genome Research. 14: 2128-35. PMID 15489335 DOI: 10.1101/Gr.2973604 |
0.395 |
|
| 2004 |
Luan CH, Qiu S, Finley JB, Carson M, Gray RJ, Huang W, Johnson D, Tsao J, Reboul J, Vaglio P, Hill DE, Vidal M, Delucas LJ, Luo M. High-throughput expression of C. elegans proteins. Genome Research. 14: 2102-10. PMID 15489332 DOI: 10.1101/Gr.2520504 |
0.431 |
|
| 2004 |
Deplancke B, Dupuy D, Vidal M, Walhout AJ. A gateway-compatible yeast one-hybrid system. Genome Research. 14: 2093-101. PMID 15489331 DOI: 10.1101/Gr.2445504 |
0.772 |
|
| 2004 |
Hope IA, Stevens J, Garner A, Hayes J, Cheo DL, Brasch MA, Vidal M. Feasibility of genome-scale construction of promoter::reporter gene fusions for expression in Caenorhabditis elegans using a multisite gateway recombination system. Genome Research. 14: 2070-5. PMID 15489328 DOI: 10.1101/Gr.2463804 |
0.384 |
|
| 2004 |
Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M. C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions. Genome Research. 14: 2064-9. PMID 15489327 DOI: 10.1101/Gr.2496804 |
0.38 |
|
| 2004 |
Brasch MA, Hartley JL, Vidal M. ORFeome cloning and systems biology: standardized mass production of the parts from the parts-list. Genome Research. 14: 2001-9. PMID 15489318 DOI: 10.1101/Gr.2769804 |
0.444 |
|
| 2004 |
Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, Zhang LV, Dupuy D, Walhout AJ, Cusick ME, Roth FP, Vidal M. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature. 430: 88-93. PMID 15190252 DOI: 10.1038/Nature02555 |
0.71 |
|
| 2004 |
Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, Bertin N, Chung S, Vidal M, Gerstein M. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. Genome Research. 14: 1107-18. PMID 15173116 DOI: 10.1101/Gr.1774904 |
0.496 |
|
| 2004 |
Fisk Green R, Lorson M, Walhout AJ, Vidal M, van den Heuvel S. Identification of critical domains and putative partners for the Caenorhabditis elegans spindle component LIN-5. Molecular Genetics and Genomics : Mgg. 271: 532-44. PMID 15138888 DOI: 10.1007/S00438-004-1012-X |
0.694 |
|
| 2004 |
Rual JF, Hill DE, Vidal M. ORFeome projects: gateway between genomics and omics. Current Opinion in Chemical Biology. 8: 20-5. PMID 15036152 DOI: 10.1016/J.Cbpa.2003.12.002 |
0.412 |
|
| 2004 |
Vidalain PO, Boxem M, Ge H, Li S, Vidal M. Increasing specificity in high-throughput yeast two-hybrid experiments. Methods (San Diego, Calif.). 32: 363-70. PMID 15003598 DOI: 10.1016/J.Ymeth.2003.10.001 |
0.57 |
|
| 2004 |
Tewari M, Hu PJ, Ahn JS, Ayivi-Guedehoussou N, Vidalain PO, Li S, Milstein S, Armstrong CM, Boxem M, Butler MD, Busiguina S, Rual JF, Ibarrola N, Chaklos ST, Bertin N, ... ... Vidal M, et al. Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network. Molecular Cell. 13: 469-82. PMID 14992718 DOI: 10.1016/S1097-2765(04)00033-4 |
0.308 |
|
| 2004 |
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Vidal M, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926 |
0.472 |
|
| 2004 |
Boulton SJ, Martin JS, Polanowska J, Hill DE, Gartner A, Vidal M. BRCA1/BARD1 orthologs required for DNA repair in Caenorhabditis elegans. Current Biology : Cb. 14: 33-9. PMID 14711411 DOI: 10.1016/J.Cub.2003.11.029 |
0.622 |
|
| 2004 |
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, ... ... Vidal M, et al. A map of the interactome network of the metazoan C. elegans. Science (New York, N.Y.). 303: 540-3. PMID 14704431 DOI: 10.1126/Science.1091403 |
0.64 |
|
| 2003 |
Ge H, Walhout AJ, Vidal M. Integrating 'omic' information: a bridge between genomics and systems biology. Trends in Genetics : Tig. 19: 551-60. PMID 14550629 DOI: 10.1016/J.Tig.2003.08.009 |
0.747 |
|
| 2003 |
Xu L, Wei Y, Reboul J, Vaglio P, Shin TH, Vidal M, Elledge SJ, Harper JW. BTB proteins are substrate-specific adaptors in an SCF-like modular ubiquitin ligase containing CUL-3. Nature. 425: 316-21. PMID 13679922 DOI: 10.1038/Nature01985 |
0.413 |
|
| 2003 |
Huang RY, Boulton SJ, Vidal M, Almo SC, Bresnick AR, Chance MR. High-throughput expression, purification, and characterization of recombinant Caenorhabditis elegans proteins. Biochemical and Biophysical Research Communications. 307: 928-34. PMID 12878200 DOI: 10.1016/S0006-291X(03)01265-8 |
0.659 |
|
| 2003 |
Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, Moore T, Hudson JR, Hartley JL, Brasch MA, Vandenhaute J, ... ... Vidal M, et al. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Nature Genetics. 34: 35-41. PMID 12679813 DOI: 10.1038/Ng1140 |
0.673 |
|
| 2003 |
Vaglio P, Lamesch P, Reboul J, Rual JF, Martinez M, Hill D, Vidal M. WorfDB: the Caenorhabditis elegans ORFeome Database. Nucleic Acids Research. 31: 237-40. PMID 12519990 DOI: 10.1093/Nar/Gkg092 |
0.37 |
|
| 2002 |
Walhout AJ, Reboul J, Shtanko O, Bertin N, Vaglio P, Ge H, Lee H, Doucette-Stamm L, Gunsalus KC, Schetter AJ, Morton DG, Kemphues KJ, Reinke V, Kim SK, Piano F, ... Vidal M, et al. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Current Biology : Cb. 12: 1952-8. PMID 12445390 DOI: 10.1016/S0960-9822(02)01279-4 |
0.755 |
|
| 2002 |
Hofmann ER, Milstein S, Boulton SJ, Ye M, Hofmann JJ, Stergiou L, Gartner A, Vidal M, Hengartner MO. Caenorhabditis elegans HUS-1 is a DNA damage checkpoint protein required for genome stability and EGL-1-mediated apoptosis. Current Biology : Cb. 12: 1908-18. PMID 12445383 DOI: 10.1016/S0960-9822(02)01262-9 |
0.563 |
|
| 2002 |
Endoh H, Vincent S, Jacob Y, Réal E, Walhout AJ, Vidal M. Integrated version of reverse two-hybrid system for the postproteomic era. Methods in Enzymology. 350: 525-45. PMID 12073334 DOI: 10.1016/S0076-6879(02)50983-6 |
0.739 |
|
| 2002 |
Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, ... ... Vidal M, et al. Structural genomics: a pipeline for providing structures for the biologist. Protein Science : a Publication of the Protein Society. 11: 723-38. PMID 11910018 DOI: 10.1110/Ps.4570102 |
0.631 |
|
| 2002 |
Huang NN, Mootz DE, Walhout AJ, Vidal M, Hunter CP. MEX-3 interacting proteins link cell polarity to asymmetric gene expression in Caenorhabditis elegans. Development (Cambridge, England). 129: 747-59. PMID 11830574 |
0.646 |
|
| 2002 |
Boulton SJ, Gartner A, Reboul J, Vaglio P, Dyson N, Hill DE, Vidal M. Combined functional genomic maps of the C. elegans DNA damage response. Science (New York, N.Y.). 295: 127-31. PMID 11778048 DOI: 10.1126/Science.1065986 |
0.757 |
|
| 2002 |
Cheng H, Cenciarelli C, Shao Z, Vidal M, Parks WP, Pagano M, Cheng-Mayer C. Human T cell leukemia virus type 1 Tax associates with a molecular chaperone complex containing hTid-1 and Hsp70. Current Biology : Cb. 11: 1771-5. PMID 11719219 DOI: 10.1016/S0960-9822(01)00540-1 |
0.402 |
|
| 2002 |
Vidal M. n-hybrid systems Trends in Cell Biology. 12: 56. DOI: 10.1016/S0962-8924(01)02175-4 |
0.309 |
|
| 2001 |
Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, Vincent S, Vidal M. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". Genome Research. 11: 2120-6. PMID 11731503 DOI: 10.1101/Gr.205301 |
0.65 |
|
| 2001 |
Ge H, Liu Z, Church GM, Vidal M. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nature Genetics. 29: 482-6. PMID 11694880 DOI: 10.1038/Ng776 |
0.644 |
|
| 2001 |
Davy A, Bello P, Thierry-Mieg N, Vaglio P, Hitti J, Doucette-Stamm L, Thierry-Mieg D, Reboul J, Boulton S, Walhout AJ, Coux O, Vidal M. A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. Embo Reports. 2: 821-8. PMID 11559592 DOI: 10.1093/Embo-Reports/Kve184 |
0.79 |
|
| 2001 |
Yin H, Morioka H, Towle CA, Vidal M, Watanabe T, Weissbach L. Evidence that HAX-1 is an interleukin-1 alpha N-terminal binding protein. Cytokine. 15: 122-37. PMID 11554782 DOI: 10.1006/Cyto.2001.0891 |
0.36 |
|
| 2001 |
Fuchs KP, Bommer G, Dumont E, Christoph B, Vidal M, Kremmer E, Kempkes B. Mutational analysis of the J recombination signal sequence binding protein (RBP-J)/Epstein-Barr virus nuclear antigen 2 (EBNA2) and RBP-J/Notch interaction. Febs Journal. 268: 4639-4646. PMID 11532000 DOI: 10.1046/J.1432-1327.2001.02387.X |
0.446 |
|
| 2001 |
Kennedy BK, Liu OW, Dick FA, Dyson N, Harlow E, Vidal M. Histone deacetylase-dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft. Proceedings of the National Academy of Sciences of the United States of America. 98: 8720-5. PMID 11447271 DOI: 10.1073/Pnas.151240898 |
0.679 |
|
| 2001 |
Walhout AJ, Vidal M. Protein interaction maps for model organisms. Nature Reviews. Molecular Cell Biology. 2: 55-62. PMID 11413466 DOI: 10.1038/35048107 |
0.717 |
|
| 2001 |
Walhout AJ, Vidal M. High-throughput yeast two-hybrid assays for large-scale protein interaction mapping. Methods (San Diego, Calif.). 24: 297-306. PMID 11403578 DOI: 10.1006/Meth.2001.1190 |
0.729 |
|
| 2001 |
Reboul J, Vaglio P, Tzellas N, Thierry-Mieg N, Moore T, Jackson C, Shin-i T, Kohara Y, Thierry-Mieg D, Thierry-Mieg J, Lee H, Hitti J, Doucette-Stamm L, Hartley JL, Temple GF, ... ... Vidal M, et al. Open-reading-frame sequence tags (OSTs) support the existence of at least 17,300 genes in C. elegans. Nature Genetics. 27: 332-6. PMID 11242119 DOI: 10.1038/85913 |
0.386 |
|
| 2001 |
Vidal M. A biological atlas of functional maps. Cell. 104: 333-9. PMID 11239391 DOI: 10.1016/S0092-8674(01)00221-5 |
0.396 |
|
| 2001 |
Boulton SJ, Vincent S, Vidal M. Use of protein-interaction maps to formulate biological questions. Current Opinion in Chemical Biology. 5: 57-62. PMID 11166649 DOI: 10.1016/S1367-5931(00)00168-X |
0.67 |
|
| 2001 |
Reboul J, Vaglio P, Tzellas N, Jackson C, Moore T, Kohara Y, Thierry-Mieg J, Thierry-Mieg D, Hitti J, Doucette-Stamm L, Hartley J, Temple G, Brasch M, Hill D, Vidal M. The gene number dilemma: Direct evidence for at least 19,000 protein-encoding genes in C. elegans and implications for the human genome Nature Genetics. 27: 82-82. DOI: 10.1038/87264 |
0.433 |
|
| 2001 |
Vaglio P, Vidal M. Functional genomics touches base Nature Cell Biology. 3: E100-E100. DOI: 10.1038/35070137 |
0.312 |
|
| 2000 |
Walhout AJ, Temple GF, Brasch MA, Hartley JL, Lorson MA, van den Heuvel S, Vidal M. GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Methods in Enzymology. 328: 575-92. PMID 11075367 DOI: 10.1016/S0076-6879(00)28419-X |
0.673 |
|
| 2000 |
Endoh H, Walhout AJ, Vidal M. A green fluorescent protein-based reverse two-hybrid system: application to the characterization of large numbers of potential protein-protein interactions. Methods in Enzymology. 328: 74-88. PMID 11075339 DOI: 10.1016/S0076-6879(00)28391-2 |
0.712 |
|
| 2000 |
Walhout AJ, Boulton SJ, Vidal M. Yeast two-hybrid systems and protein interaction mapping projects for yeast and worm. Yeast (Chichester, England). 17: 88-94. PMID 10900455 DOI: 10.1002/1097-0061(20000630)17:2<88::Aid-Yea20>3.0.Co;2-Y |
0.797 |
|
| 2000 |
Zukerberg LR, Patrick GN, Nikolic M, Humbert S, Wu CL, Lanier LM, Gertler FB, Vidal M, Van Etten RA, Tsai LH. Cables links Cdk5 and c-Abl and facilitates Cdk5 tyrosine phosphorylation, kinase upregulation, and neurite outgrowth. Neuron. 26: 633-46. PMID 10896159 DOI: 10.1016/S0896-6273(00)81200-3 |
0.463 |
|
| 2000 |
Walhout AJ, Sordella R, Lu X, Hartley JL, Temple GF, Brasch MA, Thierry-Mieg N, Vidal M. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science (New York, N.Y.). 287: 116-22. PMID 10615043 DOI: 10.1126/Science.287.5450.116 |
0.74 |
|
| 1999 |
Walhout AJ, Vidal M. A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens. Genome Research. 9: 1128-34. PMID 10568752 DOI: 10.1101/Gr.9.11.1128 |
0.715 |
|
| 1999 |
Cenciarelli C, Chiaur DS, Guardavaccaro D, Parks W, Vidal M, Pagano M. Identification of a family of human F-box proteins Current Biology. 9: 1177-1179. PMID 10531035 DOI: 10.1016/S0960-9822(00)80020-2 |
0.372 |
|
| 1999 |
Vidal M, Endoh H. Prospects for drug screening using the reverse two-hybrid system Trends in Biotechnology. 17: 374-381. PMID 10461184 DOI: 10.1016/S0167-7799(99)01338-4 |
0.398 |
|
| 1999 |
Vidal M, Legrain P. Yeast forward and reverse ‘n’-hybrid systems Nucleic Acids Research. 27: 919-929. PMID 9927722 DOI: 10.1093/Nar/27.4.919 |
0.432 |
|
| 1998 |
Schilling B, De-Medina T, Syken J, Vidal M, Münger K. A novel human DnaJ protein, hTid-1, a homolog of the Drosophila tumor suppressor protein Tid56, can interact with the human papillomavirus type 16 E7 oncoprotein. Virology. 247: 74-85. PMID 9683573 DOI: 10.1006/Viro.1998.9220 |
0.381 |
|
| 1997 |
Hu G, Zhang S, Vidal M, La Baer J, Xu T, Fearon ER. Mammalian homologs of seven in absentia regulate DCC via the ubiquitin- proteasome pathway Genes and Development. 11: 2701-2714. PMID 9334332 DOI: 10.1101/Gad.11.20.2701 |
0.463 |
|
| 1997 |
Yasugi T, Vidal M, Sakai H, Howley PM, Benson JD. Two classes of human papillomavirus type 16 E1 mutants suggest pleiotropic conformational constraints affecting E1 multimerization, E2 interaction, and interaction with cellular proteins. Journal of Virology. 71: 5942-51. PMID 9223484 DOI: 10.1128/Jvi.71.8.5942-5951.1997 |
0.359 |
|
| 1996 |
Kim S, Chen Y, O’Leary E, Witzgall R, Vidal M, Bonventre JV. A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins Proceedings of the National Academy of Sciences of the United States of America. 93: 15299-15304. PMID 8986806 DOI: 10.1073/Pnas.93.26.15299 |
0.4 |
|
| 1996 |
Vidal M, Braun P, Chen E, Boeke JD, Harlow E. Genetic characterization of a mammalian protein-protein interaction domain by using a yeast reverse two-hybrid system. Proceedings of the National Academy of Sciences of the United States of America. 93: 10321-6. PMID 8816798 DOI: 10.1073/Pnas.93.19.10321 |
0.634 |
|
| 1996 |
Vidal M, Brachmann RK, Fattaey A, Harlow E, Boeke JD. Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 93: 10315-20. PMID 8816797 DOI: 10.1073/Pnas.93.19.10315 |
0.644 |
|
| 1996 |
Du W, Vidal M, Xie JE, Dyson N. RBF, a novel RB-related gene that regulates E2F activity and interacts with cyclin E in Drosophila. Genes & Development. 10: 1206-18. PMID 8675008 DOI: 10.1101/Gad.10.10.1206 |
0.616 |
|
| 1996 |
Englert C, Vidal M, Maheswaran S, Ge Y, Ezzell RM, Isselbacher KJ, Haber DA. Truncated WT1 mutants alter the subnuclear localization of the wild-type protein. Proceedings of the National Academy of Sciences of the United States of America. 92: 11960-4. PMID 8618823 DOI: 10.1073/Pnas.92.26.11960 |
0.334 |
|
| 1995 |
Sardet C, Vidal M, Cobrinik D, Geng Y, Onufryk C, Chen A, Weinberg RA. E2F-4 and E2F-5, two members of the E2F family, are expressed in the early phases of the cell cycle. Proceedings of the National Academy of Sciences of the United States of America. 92: 2403-7. PMID 7892279 DOI: 10.1073/Pnas.92.6.2403 |
0.375 |
|
| 1993 |
Ishioka C, Frebourg T, Yan Y, Vidal M, Friend SH, Schmidt S, Iggo R. Screening patients for heterozygous p53 mutations using a functional assay in yeast. Nature Genetics. 5: 124-129. PMID 8252037 DOI: 10.1038/Ng1093-124 |
0.341 |
|
| 1993 |
Lees JA, Saito M, Vidal M, Valentine M, Look T, Harlow E, Dyson N, Helin K. The retinoblastoma protein binds to a family of E2F transcription factors. Molecular and Cellular Biology. 13: 7813-25. PMID 8246996 DOI: 10.1128/Mcb.13.12.7813 |
0.734 |
|
| 1992 |
Helin K, Lees JA, Vidal M, Dyson N, Harlow E, Fattaey A. A cDNA encoding a pRB-binding protein with properties of the transcription factor E2F. Cell. 70: 337-50. PMID 1638634 DOI: 10.1016/0092-8674(92)90107-N |
0.732 |
|
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