| Year |
Citation |
Score |
| 2020 |
Saravanan B, Soota D, Islam Z, Majumdar S, Mann R, Meel S, Farooq U, Walavalkar K, Gayen S, Singh AK, Hannenhalli S, Notani D. Ligand dependent gene regulation by transient ERα clustered enhancers. Plos Genetics. 16: e1008516. PMID 31905229 DOI: 10.1371/Journal.Pgen.1008516 |
0.35 |
|
| 2019 |
Magen A, Das Sahu A, Lee JS, Sharmin M, Lugo A, Gutkind JS, Schäffer AA, Ruppin E, Hannenhalli S. Beyond Synthetic Lethality: Charting the Landscape of Pairwise Gene Expression States Associated with Survival in Cancer. Cell Reports. 28: 938-948.e6. PMID 31340155 DOI: 10.1016/J.Celrep.2019.06.067 |
0.4 |
|
| 2019 |
Cordero P, Parikh VN, Chin ET, Erbilgin A, Gloudemans MJ, Shang C, Huang Y, Chang AC, Smith KS, Dewey F, Zaleta K, Morley M, Brandimarto J, Glazer N, Waggott D, ... ... Hannenhalli S, et al. Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure. Nature Communications. 10: 2760. PMID 31235787 DOI: 10.1038/S41467-019-10591-5 |
0.334 |
|
| 2019 |
Howard AD, Wang X, Prasad M, Sahu AD, Aniba R, Miller M, Hannenhalli S, Chang YC. Allele-specific enhancers mediate associations between LCAT and ABCA1 polymorphisms and HDL metabolism. Plos One. 14: e0215911. PMID 31039173 DOI: 10.1371/Journal.Pone.0215911 |
0.387 |
|
| 2019 |
Datta V, Hannenhalli S, Siddharthan R. ChIPulate: A comprehensive ChIP-seq simulation pipeline. Plos Computational Biology. 15: e1006921. PMID 30897079 DOI: 10.1371/Journal.Pcbi.1006921 |
0.34 |
|
| 2019 |
Sahu AD, S Lee J, Wang Z, Zhang G, Iglesias-Bartolome R, Tian T, Wei Z, Miao B, Nair NU, Ponomarova O, Friedman AA, Amzallag A, Moll T, Kasumova G, Greninger P, ... ... Hannenhalli S, et al. Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy. Molecular Systems Biology. 15: e8323. PMID 30858180 DOI: 10.15252/Msb.20188323 |
0.335 |
|
| 2019 |
Das A, Lee JS, Zhang G, Wang Z, Amzallag A, Boland G, Hannenhalli S, Herlyn M, Benes C, Gutkind JS, Flaherty K, Ruppin E. Abstract LB-149: Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-149 |
0.325 |
|
| 2018 |
Nair NU, Das A, Amit U, Robinson W, Park SG, Basu M, Lugo A, Leor J, Ruppin E, Hannenhalli S. Putative functional genes in idiopathic dilated cardiomyopathy. Scientific Reports. 8: 66. PMID 29311597 DOI: 10.1038/S41598-017-18524-2 |
0.4 |
|
| 2018 |
Lee JS, Das A, Jerby-Arnon L, Arafeh R, Davidson M, Amzallag A, Park SG, Cheng K, Robinson W, Atias D, Stossel C, Buzhor E, Stein G, Waterfall JJ, Meltzer PS, ... ... Hannenhalli S, et al. Abstract A188: Harnessing synthetic lethality to predict the response to cancer treatments Molecular Cancer Therapeutics. 17. DOI: 10.1158/1535-7163.Targ-17-A188 |
0.344 |
|
| 2017 |
Patkar S, Magen A, Sharan R, Hannenhalli S. A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer. Plos Computational Biology. 13: e1005793. PMID 29190299 DOI: 10.1371/Journal.Pcbi.1005793 |
0.336 |
|
| 2017 |
Basu M, Sharmin M, Das A, Nair NU, Wang K, Lee JS, Chang YC, Ruppin E, Hannenhalli S. Prediction and Subtyping of Hypertension from Pan-tissue Transcriptomic and Genetic Analyses. Genetics. PMID 28899996 DOI: 10.1534/Genetics.117.300280 |
0.349 |
|
| 2017 |
Sarda S, Das A, Vinson C, Hannenhalli S. Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal-promoters. Genome Research. PMID 28223400 DOI: 10.1101/Gr.212050.116 |
0.402 |
|
| 2017 |
Magen A, Das A, Lee J, Hannenhalli S, Ruppin E. Abstract 1558: Data-driven approach to detecting novel gene interactions in cancer with applications to drug response prediction and cancer stratification Cancer Research. 77: 1558-1558. DOI: 10.1158/1538-7445.Am2017-1558 |
0.305 |
|
| 2016 |
Karathia H, Kingsford C, Girvan M, Hannenhalli S. A pathway-centric view of spatial proximity in the 3D nucleome across cell lines. Scientific Reports. 6: 39279. PMID 27976707 DOI: 10.1038/Srep39279 |
0.341 |
|
| 2016 |
Sharmin M, Bravo HC, Hannenhalli S. Heterogeneity of transcription factor binding specificity models within and across cell lines. Genome Research. PMID 27311443 DOI: 10.1101/Gr.199166.115 |
0.349 |
|
| 2015 |
Sharmin M, Bravo HC, Hannenhalli S. Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer. Bmc Cancer. 16: 88. PMID 26868017 DOI: 10.1186/S12885-016-2128-1 |
0.341 |
|
| 2015 |
Das A, Morley M, Moravec CS, Tang WH, Hakonarson H, Margulies KB, Cappola TP, Jensen S, Hannenhalli S. Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6: 8555. PMID 26456756 DOI: 10.1038/Ncomms9555 |
0.377 |
|
| 2015 |
Sarda S, Hannenhalli S. High-Throughput Identification of Cis-Regulatory Rewiring Events in Yeast. Molecular Biology and Evolution. 32: 3047-63. PMID 26399482 DOI: 10.1093/Molbev/Msv203 |
0.367 |
|
| 2015 |
Kun Wang, Das A, Zheng-Mei Xiong, Kan Cao, Hannenhalli S. Phenotype-Dependent Coexpression Gene Clusters: Application to Normal and Premature Ageing. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 30-9. PMID 26357076 DOI: 10.1109/Tcbb.2014.2359446 |
0.327 |
|
| 2015 |
Liu Y, Morley M, Brandimarto J, Hannenhalli S, Hu Y, Ashley EA, Tang WH, Moravec CS, Margulies KB, Cappola TP, Li M. RNA-Seq identifies novel myocardial gene expression signatures of heart failure. Genomics. 105: 83-9. PMID 25528681 DOI: 10.1016/J.Ygeno.2014.12.002 |
0.333 |
|
| 2015 |
Sahu AD, Lee JS, Hannenhalli S, Ruppin E. Abstract B56: Tracing synthetic rescue reprogramming to counteract cancer resistance Molecular Cancer Therapeutics. 14. DOI: 10.1158/1535-7163.Targ-15-B56 |
0.345 |
|
| 2014 |
Park SG, Hannenhalli S, Choi SS. Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals. Bmc Genomics. 15: 526. PMID 24964727 DOI: 10.1186/1471-2164-15-526 |
0.418 |
|
| 2014 |
Darnell DK, Zhang LS, Hannenhalli S, Yaklichkin SY. Developmental expression of chicken FOXN1 and putative target genes during feather development. The International Journal of Developmental Biology. 58: 57-64. PMID 24860996 DOI: 10.1387/Ijdb.130023Sy |
0.362 |
|
| 2014 |
Sarda S, Hannenhalli S. Next-generation sequencing and epigenomics research: a hammer in search of nails. Genomics & Informatics. 12: 2-11. PMID 24748856 DOI: 10.5808/Gi.2014.12.1.2 |
0.315 |
|
| 2014 |
Alemu EY, Carl JW, Corrada Bravo H, Hannenhalli S. Determinants of expression variability. Nucleic Acids Research. 42: 3503-14. PMID 24435799 DOI: 10.1093/Nar/Gkt1364 |
0.409 |
|
| 2014 |
Plasschaert RN, Vigneau S, Tempera I, Gupta R, Maksimoska J, Everett L, Davuluri R, Mamorstein R, Lieberman PM, Schultz D, Hannenhalli S, Bartolomei MS. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids Research. 42: 774-89. PMID 24121688 DOI: 10.1093/Nar/Gkt910 |
0.352 |
|
| 2014 |
Plasschaert RN, Vigneau S, Tempera I, Gupta R, Maksimoska J, Everett L, Davuluri R, Marmorstein R, Lieberman PM, Schultz D, Hannenhalli S, Bartolomei MS. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation Nucleic Acids Research. 42: 7487-7487. DOI: 10.1093/Nar/Gku470 |
0.308 |
|
| 2014 |
Lu Y, Hannenhalli S, Cappola T, Putt M. An evaluation of Monte-Carlo logic and logicFS motivated by a study of the regulation of gene expression in heart failure Journal of Applied Statistics. 41: 1956-1975. DOI: 10.1080/02664763.2014.898133 |
0.316 |
|
| 2013 |
Malin J, Aniba MR, Hannenhalli S. Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers. Nucleic Acids Research. 41: 6828-38. PMID 23700312 DOI: 10.1093/Nar/Gkt374 |
0.375 |
|
| 2013 |
Kim R, Kulkarni P, Hannenhalli S. Derepression of Cancer/testis antigens in cancer is associated with distinct patterns of DNA hypomethylation. Bmc Cancer. 13: 144. PMID 23522060 DOI: 10.1186/1471-2407-13-144 |
0.32 |
|
| 2013 |
Mukherjee R, Evans P, Singh LN, Hannenhalli S. Correlated evolution of positions within mammalian cis elements. Plos One. 8: e55521. PMID 23408994 DOI: 10.1371/Journal.Pone.0055521 |
0.366 |
|
| 2013 |
Choi SS, Hannenhalli S. Three independent determinants of protein evolutionary rate. Journal of Molecular Evolution. 76: 98-111. PMID 23400388 DOI: 10.1007/S00239-013-9543-6 |
0.327 |
|
| 2013 |
Zeng J, Hannenhalli S. Inferring evolution of gene duplicates using probabilistic models and nonparametric belief propagation. Bmc Genomics. 14: S15. PMID 23368094 DOI: 10.1186/1471-2164-14-S1-S15 |
0.392 |
|
| 2012 |
Li J, Bowens N, Cheng L, Zhu X, Chen M, Hannenhalli S, Cappola TP, Parmacek MS. Myocardin-like protein 2 regulates TGFβ signaling in embryonic stem cells and the developing vasculature. Development (Cambridge, England). 139: 3531-42. PMID 22899851 DOI: 10.1242/Dev.082222 |
0.335 |
|
| 2012 |
Stewart AJ, Hannenhalli S, Plotkin JB. Why transcription factor binding sites are ten nucleotides long. Genetics. 192: 973-85. PMID 22887818 DOI: 10.1534/Genetics.112.143370 |
0.341 |
|
| 2012 |
Khaladkar M, Hannenhalli S. Functional divergence of gene duplicates - a domain-centric view. Bmc Evolutionary Biology. 12: 126. PMID 22839301 DOI: 10.1186/1471-2148-12-126 |
0.345 |
|
| 2012 |
Sahu AD, Hannenhalli S. Dirichlet process model for joint haplotype inference and GWAS Bmc Proceedings. 6. DOI: 10.1186/1753-6561-6-S6-P49 |
0.311 |
|
| 2012 |
Malin J, Aniba R, Hannenhalli S. Enhancer network revealed by correlated DNAse HS states of enhancers Bmc Proceedings. 6. DOI: 10.1186/1753-6561-6-S6-P28 |
0.355 |
|
| 2011 |
Yaklichkin SY, Darnell DK, Pier MV, Antin PB, Hannenhalli S. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. Bmc Evolutionary Biology. 11: 302. PMID 21999483 DOI: 10.1186/1471-2148-11-302 |
0.407 |
|
| 2011 |
Khaladkar M, Smyda M, Hannenhalli S. Epigenomic and RNA structural correlates of polyadenylation. Rna Biology. 8: 529-37. PMID 21508683 DOI: 10.4161/Rna.8.3.15194 |
0.305 |
|
| 2011 |
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S. Genome-wide survey of natural selection on functional, structural, and network properties of polymorphic sites in Saccharomyces paradoxus. Molecular Biology and Evolution. 28: 2615-27. PMID 21478372 DOI: 10.1093/Molbev/Msr085 |
0.344 |
|
| 2011 |
Everett LJ, Jensen ST, Hannenhalli S. Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis. Nucleic Acids Research. 39: e78. PMID 21470963 DOI: 10.1093/Nar/Gkr172 |
0.352 |
|
| 2011 |
Dewey FE, Perez MV, Wheeler MT, Watt C, Spin J, Langfelder P, Horvath S, Hannenhalli S, Cappola TP, Ashley EA. Gene coexpression network topology of cardiac development, hypertrophy, and failure. Circulation. Cardiovascular Genetics. 4: 26-35. PMID 21127201 DOI: 10.1161/Circgenetics.110.941757 |
0.332 |
|
| 2010 |
Trivedi CM, Zhu W, Wang Q, Jia C, Kee HJ, Li L, Hannenhalli S, Epstein JA. Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation. Developmental Cell. 19: 450-9. PMID 20833366 DOI: 10.1016/J.Devcel.2010.08.012 |
0.307 |
|
| 2010 |
Everett L, Hansen M, Hannenhalli S. Regulating the regulators: modulators of transcription factor activity. Methods in Molecular Biology (Clifton, N.J.). 674: 297-312. PMID 20827600 DOI: 10.1007/978-1-60761-854-6_19 |
0.432 |
|
| 2010 |
Rohlfing AK, Miteva Y, Hannenhalli S, Lamitina T. Genetic and physiological activation of osmosensitive gene expression mimics transcriptional signatures of pathogen infection in C. elegans. Plos One. 5: e9010. PMID 20126308 DOI: 10.1371/Journal.Pone.0009010 |
0.349 |
|
| 2010 |
Hansen M, Everett L, Singh L, Hannenhalli S. Mimosa: mixture model of co-expression to detect modulators of regulatory interaction. Algorithms For Molecular Biology : Amb. 5: 4. PMID 20047660 DOI: 10.1186/1748-7188-5-4 |
0.386 |
|
| 2010 |
Singh LN, Hannenhalli S. Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families. Nucleic Acids Research. 38: 738-49. PMID 19933262 DOI: 10.1093/Nar/Gkp989 |
0.412 |
|
| 2009 |
Putt ME, Hannenhalli S, Lu Y, Haines P, Chandrupatla HR, Morrisey EE, Margulies KB, Cappola TP. Evidence for coregulation of myocardial gene expression by MEF2 and NFAT in human heart failure. Circulation. Cardiovascular Genetics. 2: 212-9. PMID 20031589 DOI: 10.1161/Circgenetics.108.816686 |
0.313 |
|
| 2009 |
Essien K, Vigneau S, Apreleva S, Singh LN, Bartolomei MS, Hannenhalli S. CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome Biology. 10: R131. PMID 19922652 DOI: 10.1186/Gb-2009-10-11-R131 |
0.358 |
|
| 2009 |
Hannenhalli S, Kaestner KH. The evolution of Fox genes and their role in development and disease. Nature Reviews. Genetics. 10: 233-40. PMID 19274050 DOI: 10.1038/Nrg2523 |
0.374 |
|
| 2009 |
Everett L, Vo A, Hannenhalli S. PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids Research. 37: D66-71. PMID 18927104 DOI: 10.1093/Nar/Gkn731 |
0.424 |
|
| 2008 |
Fermin DR, Barac A, Lee S, Polster SP, Hannenhalli S, Bergemann TL, Grindle S, Dyke DB, Pagani F, Miller LW, Tan S, Dos Remedios C, Cappola TP, Margulies KB, Hall JL. Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation. Cardiovascular Genetics. 1: 117-25. PMID 20031553 DOI: 10.1161/Circgenetics.108.802652 |
0.312 |
|
| 2008 |
Sethupathy P, Hannenhalli S. A tutorial of the poisson random field model in population genetics. Advances in Bioinformatics. 257864. PMID 19920987 DOI: 10.1155/2008/257864 |
0.301 |
|
| 2008 |
Sethupathy P, Giang H, Plotkin JB, Hannenhalli S. Genome-wide analysis of natural selection on human cis-elements. Plos One. 3: e3137. PMID 18781197 DOI: 10.1371/Journal.Pone.0003137 |
0.377 |
|
| 2008 |
Essien K, Hannenhalli S, Stoeckert CJ. Computational analysis of constraints on noncoding regions, coding regions and gene expression in relation to Plasmodium phenotypic diversity. Plos One. 3: e3122. PMID 18769675 DOI: 10.1371/Journal.Pone.0003122 |
0.333 |
|
| 2008 |
Wan LB, Pan H, Hannenhalli S, Cheng Y, Ma J, Fedoriw A, Lobanenkov V, Latham KE, Schultz RM, Bartolomei MS. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development Development. 135: 2729-2738. PMID 18614575 DOI: 10.1242/Dev.024539 |
0.345 |
|
| 2008 |
Singh LN, Hannenhalli S. Functional diversification of paralogous transcription factors via divergence in DNA binding site motif and in expression. Plos One. 3: e2345. PMID 18523562 DOI: 10.1371/Journal.Pone.0002345 |
0.431 |
|
| 2008 |
Hannenhalli S. Eukaryotic transcription factor binding sites--modeling and integrative search methods. Bioinformatics (Oxford, England). 24: 1325-31. PMID 18426806 DOI: 10.1093/Bioinformatics/Btn198 |
0.37 |
|
| 2007 |
Singh LN, Wang LS, Hannenhalli S. TREMOR--a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic Acids Research. 35: 7360-71. PMID 17962303 DOI: 10.1093/Nar/Gkm885 |
0.392 |
|
| 2007 |
Wang J, Ungar LH, Tseng H, Hannenhalli S. MetaProm: a neural network based meta-predictor for alternative human promoter prediction. Bmc Genomics. 8: 374. PMID 17941982 DOI: 10.1186/1471-2164-8-374 |
0.346 |
|
| 2007 |
Minkah N, Hwang Y, Perry K, Van Duyne GD, Hendrickson R, Lefkowitz EJ, Hannenhalli S, Bushman FD. Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. Virology. 365: 60-9. PMID 17462694 DOI: 10.1016/J.Virol.2007.02.037 |
0.326 |
|
| 2007 |
Vardhanabhuti S, Wang J, Hannenhalli S. Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation. Nucleic Acids Research. 35: 3203-13. PMID 17452354 DOI: 10.1093/Nar/Gkm201 |
0.341 |
|
| 2007 |
Zhang Y, Rath N, Hannenhalli S, Wang Z, Cappola T, Kimura S, Atochina-Vasserman E, Lu MM, Beers MF, Morrisey EE. GATA and Nkx factors synergistically regulate tissue-specific gene expression and development in vivo. Development (Cambridge, England). 134: 189-98. PMID 17164424 DOI: 10.1242/Dev.02720 |
0.356 |
|
| 2006 |
Berry C, Hannenhalli S, Leipzig J, Bushman FD. Selection of target sites for mobile DNA integration in the human genome. Plos Computational Biology. 2: e157. PMID 17166054 DOI: 10.1371/Journal.Pcbi.0020157 |
0.347 |
|
| 2006 |
Hadley D, Murphy T, Valladares O, Hannenhalli S, Ungar L, Kim J, Bućan M. Patterns of sequence conservation in presynaptic neural genes. Genome Biology. 7: R105. PMID 17096848 DOI: 10.1186/Gb-2006-7-11-R105 |
0.408 |
|
| 2006 |
Hinsch H, Hannenhalli S. Recurring genomic breaks in independent lineages support genomic fragility. Bmc Evolutionary Biology. 6: 90. PMID 17090315 DOI: 10.1186/1471-2148-6-90 |
0.304 |
|
| 2006 |
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP. Transcriptional genomics associates FOX transcription factors with human heart failure. Circulation. 114: 1269-76. PMID 16952980 DOI: 10.1161/Circulationaha.106.632430 |
0.346 |
|
| 2006 |
Everett L, Wang LS, Hannenhalli S. Dense subgraph computation via stochastic search: application to detect transcriptional modules. Bioinformatics (Oxford, England). 22: e117-23. PMID 16873461 DOI: 10.1093/Bioinformatics/Btl260 |
0.369 |
|
| 2006 |
Wang J, Hannenhalli S. A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research Communications. 347: 166-77. PMID 16806065 DOI: 10.1016/J.Bbrc.2006.06.062 |
0.392 |
|
| 2006 |
Hannenhalli SS, Middleton RP, Levy S, Perroud B, Holzwarth JA, McDonald K, Hannah SS. Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements Osteoarthritis and Cartilage. 14: 830-838. PMID 16580849 DOI: 10.1016/j.joca.2006.02.007 |
0.325 |
|
| 2006 |
Keeley MB, Wood MA, Isiegas C, Stein J, Hellman K, Hannenhalli S, Abel T. Differential transcriptional response to nonassociative and associative components of classical fear conditioning in the amygdala and hippocampus. Learning & Memory (Cold Spring Harbor, N.Y.). 13: 135-42. PMID 16547164 DOI: 10.1101/Lm.86906 |
0.302 |
|
| 2006 |
Ross DA, Hannenhalli S, Tobias JW, Cooch N, Shiekhattar R, Kadesch T. Functional analysis of Hes-1 in preadipocytes. Molecular Endocrinology (Baltimore, Md.). 20: 698-705. PMID 16282371 DOI: 10.1210/Me.2005-0325 |
0.422 |
|
| 2005 |
Bushman F, Lewinski M, Ciuffi A, Barr S, Leipzig J, Hannenhalli S, Hoffmann C. Genome-wide analysis of retroviral DNA integration. Nature Reviews. Microbiology. 3: 848-58. PMID 16175173 DOI: 10.1038/Nrmicro1263 |
0.337 |
|
| 2005 |
Hannenhalli S, Wang LS. Enhanced position weight matrices using mixture models. Bioinformatics (Oxford, England). 21: i204-12. PMID 15961459 DOI: 10.1093/Bioinformatics/Bti1001 |
0.31 |
|
| 2005 |
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD. Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription. Journal of Virology. 79: 6610-9. PMID 15890899 DOI: 10.1128/Jvi.79.11.6610-6619.2005 |
0.342 |
|
| 2004 |
Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, Walenz B, Shatkay H, Dew I, Miller JR, Flanigan MJ, Edwards NJ, Bolanos R, Fasulo D, Halldorsson BV, ... Hannenhalli S, et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proceedings of the National Academy of Sciences of the United States of America. 101: 1916-21. PMID 14769938 DOI: 10.1073/Pnas.0307971100 |
0.302 |
|
| 2004 |
Ishimori N, Walsh K, Zheng X, Lu F, Hannenhalli S, Nusskern D, Mural R, Paigen B. CHARACTERIZATION OF Ath17, A QUANTITATIVE TRAIT LOCUS FOR ATHEROSCLEROSIS SUSCEPTIBILITY BETWEEN C57BL/6J AND 129S1/SvImJ; SINGLE-NUCLEOTIDE POLYMORPHISMS HAVE IMPORTANT IMPLICATIONS ON IDENTIFYING ATHEROSCLEROSIS MODIFIER GENES Cardiovascular Pathology. 13: 5-6. DOI: 10.1016/J.Carpath.2004.03.010 |
0.312 |
|
| 2003 |
Hannenhalli S, Levy S. Transcriptional regulation of protein complexes and biological pathways. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 14: 611-9. PMID 14629111 DOI: 10.1007/S00335-002-2260-X |
0.388 |
|
| 2002 |
Levy S, Hannenhalli S. Identification of transcription factor binding sites in the human genome sequence. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 13: 510-4. PMID 12370781 DOI: 10.1007/S00335-002-2175-6 |
0.369 |
|
| 2002 |
Hannenhalli S, Levy S. Predicting transcription factor synergism. Nucleic Acids Research. 30: 4278-84. PMID 12364607 DOI: 10.1093/Nar/Gkf535 |
0.414 |
|
| 2001 |
Levy S, Hannenhalli S, Workman C. Enrichment of regulatory signals in conserved non-coding genomic sequence Bioinformatics. 17: 871-877. PMID 11673231 DOI: 10.1093/Bioinformatics/17.10.871 |
0.383 |
|
| 2001 |
Hannenhalli S, Levy S. Promoter prediction in the human genome Bioinformatics. 17. PMID 11472997 DOI: 10.1093/Bioinformatics/17.Suppl_1.S90 |
0.395 |
|
| 2001 |
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, ... ... Hannenhalli S, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040 |
0.35 |
|
| 1996 |
Hannenhalli S. Polynomial-time algorithm for computing translocation distance between genomes Discrete Applied Mathematics. 71: 137-151. DOI: 10.1016/S0166-218X(96)00061-3 |
0.31 |
|
| 1995 |
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA. Genome sequence comparison and scenarios for gene rearrangements: a test case. Genomics. 30: 299-311. PMID 8586431 DOI: 10.1006/Geno.1995.9873 |
0.366 |
|
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