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Ilan Gronau - Publications

Affiliations: 
Biological Statistics and Computational Biology Cornell University, Ithaca, NY, United States 
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13/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Chavez DE, Gronau I, Hains T, Dikow RB, Frandsen PB, Figueiró HV, Garcez FS, Tchaicka L, de Paula RC, Rodrigues FHG, Jorge RSP, Lima ES, Songsasen N, Johnson WE, Eizirik E, et al. Comparative genomics uncovers the evolutionary history, demography, and molecular adaptations of South American canids. Proceedings of the National Academy of Sciences of the United States of America. 119: e2205986119. PMID 35969758 DOI: 10.1073/pnas.2205986119  0.356
2020 Hejase HA, Salman-Minkov A, Campagna L, Hubisz MJ, Lovette IJ, Gronau I, Siepel A. Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps. Proceedings of the National Academy of Sciences of the United States of America. 117: 30554-30565. PMID 33199636 DOI: 10.1073/pnas.2015987117  0.387
2019 Chavez DE, Gronau I, Hains T, Kliver S, Koepfli KP, Wayne RK. Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus). Scientific Reports. 9: 8329. PMID 31171819 DOI: 10.1038/S41598-019-44772-5  0.398
2016 Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, et al. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature. PMID 26886800 DOI: 10.1038/Nature16544  0.357
2015 Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilá C, et al. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research. PMID 26680994 DOI: 10.1101/Gr.197517.115  0.35
2015 Campagna L, Gronau I, Silveira LF, Siepel A, Lovette IJ. Distinguishing noise from signal in patterns of genomic divergence in a highly polymorphic avian radiation. Molecular Ecology. 24: 4238-51. PMID 26175196 DOI: 10.1111/Mec.13314  0.325
2015 Gulko B, Hubisz MJ, Gronau I, Siepel A. A method for calculating probabilities of fitness consequences for point mutations across the human genome Nature Genetics. 47: 276-283. PMID 25599402 DOI: 10.1038/Ng.3196  0.577
2014 Rasmussen MD, Hubisz MJ, Gronau I, Siepel A. Genome-wide inference of ancestral recombination graphs. Plos Genetics. 10: e1004342. PMID 24831947 DOI: 10.1371/Journal.Pgen.1004342  0.507
2014 Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, et al. Genome sequencing highlights the dynamic early history of dogs. Plos Genetics. 10: e1004016. PMID 24453982 DOI: 10.1371/Journal.Pgen.1004016  0.335
2013 Arbiza L, Gronau I, Aksoy BA, Hubisz MJ, Gulko B, Keinan A, Siepel A. Genome-wide inference of natural selection on human transcription factor binding sites Nature Genetics. 45: 723-729. PMID 23749186 DOI: 10.1038/Ng.2658  0.575
2013 Gronau I, Arbiza L, Mohammed J, Siepel A. Inference of natural selection from interspersed genomic elements based on polymorphism and divergence. Molecular Biology and Evolution. 30: 1159-71. PMID 23386628 DOI: 10.1093/Molbev/Mst019  0.56
2012 Choi SC, Rasmussen MD, Hubisz MJ, Gronau I, Stanhope MJ, Siepel A. Replacing and additive horizontal gene transfer in Streptococcus. Molecular Biology and Evolution. 29: 3309-20. PMID 22617954 DOI: 10.1093/Molbev/Mss138  0.311
2011 Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A. Bayesian inference of ancient human demography from individual genome sequences Nature Genetics. 43: 1031-1034. PMID 21926973 DOI: 10.1038/Ng.937  0.581
Low-probability matches (unlikely to be authored by this person)
2016 Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, et al. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics. 12: e1005851. PMID 26943675 DOI: 10.1371/Journal.Pgen.1005851  0.292
2010 Gronau I, Moran S, Yavneh I. Adaptive distance measures for resolving K2P quartets: metric separation versus stochastic noise. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1509-18. PMID 20575667 DOI: 10.1089/cmb.2009.0236  0.281
2016 vonHoldt BM, Cahill JA, Fan Z, Gronau I, Robinson J, Pollinger JP, Shapiro B, Wall J, Wayne RK. Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf. Science Advances. 2: e1501714. PMID 29713682 DOI: 10.1126/Sciadv.1501714  0.271
2023 Lauterbur ME, Cavassim MIA, Gladstein AL, Gower G, Pope NS, Tsambos G, Adrion J, Belsare S, Biddanda A, Caudill V, Cury J, Echevarria I, Haller BC, Hasan AR, Huang X, ... ... Gronau I, et al. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. Elife. 12. PMID 37342968 DOI: 10.7554/eLife.84874  0.268
2018 Damti Y, Gronau I, Moran S, Yavneh I. Comparing evolutionary distances via adaptive distance functions. Journal of Theoretical Biology. 440: 88-99. PMID 29277603 DOI: 10.1016/j.jtbi.2017.12.022  0.226
2009 Gronau I, Moran S, Yavneh I. Towards optimal distance functions for stochastic substitution models. Journal of Theoretical Biology. 260: 294-307. PMID 19501101 DOI: 10.1016/j.jtbi.2009.05.028  0.222
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967  0.207
2022 Leibovich Z, Gronau I. Optimal Design of Synthetic DNA Sequences Without Unwanted Binding Sites. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 35648072 DOI: 10.1089/cmb.2021.0417  0.166
2007 Gronau I, Moran S. On the hardness of inferring phylogenies from triplet-dissimilarities Theoretical Computer Science. 389: 44-55. DOI: 10.1016/j.tcs.2007.07.048  0.118
2023 Avram O, Durmus B, Rakocz N, Corradetti G, An U, Nitalla MG, Rudas Á, Wakatsuki Y, Hirabayashi K, Velaga S, Tiosano L, Corvi F, Verma A, Karamat A, Lindenberg S, ... ... Gronau I, et al. SLIViT: a general AI framework for clinical-feature diagnosis from limited 3D biomedical-imaging data. Research Square. PMID 38045283 DOI: 10.21203/rs.3.rs-3044914/v2  0.115
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, et al. Author response: A community-maintained standard library of population genetic models Elife. DOI: 10.7554/Elife.54967.Sa2  0.08
2014 Mohammed J, Bortolamiol-Becet D, Flynt AS, Gronau I, Siepel A, Lai EC. Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila. Rna (New York, N.Y.). 20: 1195-209. PMID 24942624 DOI: 10.1261/Rna.044644.114  0.079
2007 Gronau I, Moran S. Neighbor joining algorithms for inferring phylogenies via LCA distances. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 1-15. PMID 17381342 DOI: 10.1089/cmb.2006.0115  0.072
2012 Doerr D, Gronau I, Moran S, Yavneh I. Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms For Molecular Biology : Amb. 7: 22. PMID 22938153 DOI: 10.1186/1748-7188-7-22  0.068
2011 Gronau I, Moran S, Snir S. Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges Random Structures & Algorithms. 40: 350-384. DOI: 10.1002/rsa.20372  0.062
2008 Linshiz G, Yehezkel TB, Kaplan S, Gronau I, Ravid S, Adar R, Shapiro E. Recursive construction of perfect DNA molecules from imperfect oligonucleotides. Molecular Systems Biology. 4: 191. PMID 18463615 DOI: 10.1038/Msb.2008.26  0.06
2011 Yehezkel TB, Linshiz G, Kaplan S, Gronau I, Ravid S, Adar R, Shapiro E. Recursive construction and error correction of DNA molecules and libraries from synthetic and natural DNA. Methods in Enzymology. 498: 207-45. PMID 21601680 DOI: 10.1016/B978-0-12-385120-8.00010-3  0.053
2017 vonHoldt BM, Cahill JA, Gronau I, Shapiro B, Wall J, Wayne RK. Response to Hohenlohe et al. Science Advances. 3: e1701233. PMID 28630935 DOI: 10.1126/Sciadv.1701233  0.01
2007 Gronau I, Moran S. Optimal implementations of UPGMA and other common clustering algorithms Information Processing Letters. 104: 205-210. DOI: 10.1016/j.ipl.2007.07.002  0.01
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