| Year |
Citation |
Score |
| 2024 |
Bortel P, Piga I, Koenig C, Gerner C, Martinez-Val A, Olsen JV. Systematic optimization of automated phosphopeptide enrichment for high-sensitivity phosphoproteomics. Molecular & Cellular Proteomics : McP. 100754. PMID 38548019 DOI: 10.1016/j.mcpro.2024.100754 |
0.383 |
|
| 2024 |
Ye Z, Sabatier P, Martin-Gonzalez J, Eguchi A, Lechner M, Østergaard O, Xie J, Guo Y, Schultz L, Truffer R, Bekker-Jensen DB, Bache N, Olsen JV. One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes. Nature Communications. 15: 2474. PMID 38503780 DOI: 10.1038/s41467-024-46777-9 |
0.746 |
|
| 2024 |
Fagernäs Z, Troché G, Olsen JV, Welker F. Digging deeper into ancient skeletal proteomes through consecutive digestion with multiple proteases. Journal of Proteomics. 298: 105143. PMID 38423353 DOI: 10.1016/j.jprot.2024.105143 |
0.32 |
|
| 2024 |
Guzman UH, Martinez-Val A, Ye Z, Damoc E, Arrey TN, Pashkova A, Renuse S, Denisov E, Petzoldt J, Peterson AC, Harking F, Østergaard O, Rydbirk R, Aznar S, Stewart H, ... ... Olsen JV, et al. Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition. Nature Biotechnology. PMID 38302753 DOI: 10.1038/s41587-023-02099-7 |
0.751 |
|
| 2024 |
Lu L, Ye Z, Zhang R, Olsen JV, Yuan Y, Mao Y. ETD-Based Proteomic Profiling Improves Arginine Methylation Identification and Reveals Novel PRMT5 Substrates. Journal of Proteome Research. PMID 38272855 DOI: 10.1021/acs.jproteome.3c00724 |
0.729 |
|
| 2023 |
Koenig C, Martinez-Val A, Naicker P, Stoychev S, Jordaan J, Olsen JV. Protocol for high-throughput semi-automated label-free- or TMT-based phosphoproteome profiling. Star Protocols. 4: 102536. PMID 37659085 DOI: 10.1016/j.xpro.2023.102536 |
0.308 |
|
| 2023 |
Rudjord-Levann AM, Ye Z, Hafkenscheid L, Horn S, Wiegertjes R, Nielsen MAI, Song M, Mathiesen CBK, Stoop J, Stowell S, Straten PT, Leffler H, Vakhrushev SY, Dabelsteen S, Olsen JV, et al. Galectin-1 induces a tumor-associated macrophage phenotype and upregulates indoleamine 2,3-dioxygenase-1. Iscience. 26: 106984. PMID 37534161 DOI: 10.1016/j.isci.2023.106984 |
0.683 |
|
| 2023 |
Phlairaharn T, Ye Z, Krismer E, Pedersen AK, Pietzner M, Olsen JV, Schoof EM, Searle BC. Optimizing Linear Ion-Trap Data-Independent Acquisition toward Single-Cell Proteomics. Analytical Chemistry. 95: 9881-9891. PMID 37338819 DOI: 10.1021/acs.analchem.3c00842 |
0.755 |
|
| 2023 |
Martínez-Val A, Fort K, Koenig C, Van der Hoeven L, Franciosa G, Moehring T, Ishihama Y, Chen YJ, Makarov A, Xuan Y, Olsen JV. Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids. Nature Communications. 14: 3599. PMID 37328457 DOI: 10.1038/s41467-023-39347-y |
0.38 |
|
| 2023 |
Phlairaharn T, Ye Z, Krismer E, Pedersen AK, Pietzner M, Olsen JV, Schoof EM, Searle BC. Optimizing linear ion trap data independent acquisition towards single cell proteomics. Biorxiv : the Preprint Server For Biology. PMID 36865114 DOI: 10.1101/2023.02.21.529444 |
0.754 |
|
| 2022 |
Ye Z, Kilic G, Dabelsteen S, Marinova IN, Thøfner JFB, Song M, Rudjord-Levann AM, Bagdonaite I, Vakhrushev SY, Brakebusch CH, Olsen JV, Wandall HH. Characterization of TGF-β signaling in a human organotypic skin model reveals that loss of TGF-βRII induces invasive tissue growth. Science Signaling. 15: eabo2206. PMID 36413597 DOI: 10.1126/scisignal.abo2206 |
0.663 |
|
| 2022 |
Kverneland AH, Østergaard O, Emdal KB, Svane IM, Olsen JV. Differential ultracentrifugation enables deep plasma proteomics through enrichment of extracellular vesicles. Proteomics. e2200039. PMID 36398564 DOI: 10.1002/pmic.202200039 |
0.331 |
|
| 2022 |
Martinez-Val A, Guzmán UH, Olsen JV. Obtaining Complete Human Proteomes. Annual Review of Genomics and Human Genetics. PMID 35440146 DOI: 10.1146/annurev-genom-112921-024948 |
0.382 |
|
| 2022 |
Ye Z, Batth TS, Rüther P, Olsen JV. A deeper look at carrier proteome effects for single-cell proteomics. Communications Biology. 5: 150. PMID 35194133 DOI: 10.1038/s42003-022-03095-4 |
0.769 |
|
| 2021 |
Martinez-Val A, Bekker-Jensen DB, Steigerwald S, Koenig C, Østergaard O, Mehta A, Tran T, Sikorski K, Torres-Vega E, Kwasniewicz E, Brynjólfsdóttir SH, Frankel LB, Kjøbsted R, Krogh N, Lundby A, ... ... Olsen JV, et al. Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution. Nature Communications. 12: 7113. PMID 34876567 DOI: 10.1038/s41467-021-27398-y |
0.318 |
|
| 2021 |
Martinez-Val A, Bekker-Jensen DB, Hogrebe A, Olsen JV. Data Processing and Analysis for DIA-Based Phosphoproteomics Using Spectronaut. Methods in Molecular Biology (Clifton, N.J.). 2361: 95-107. PMID 34236657 DOI: 10.1007/978-1-0716-1641-3_6 |
0.385 |
|
| 2021 |
Pedersen AK, Pfeiffer A, Karemore G, Akimov V, Bekker-Jensen DB, Blagoev B, Francavilla C, Olsen JV. Proteomic investigation of Cbl and Cbl-b in neuroblastoma cell differentiation highlights roles for SHP-2 and CDK16. Iscience. 24: 102321. PMID 33889818 DOI: 10.1016/j.isci.2021.102321 |
0.329 |
|
| 2020 |
Askeland A, Borup A, Østergaard O, Olsen JV, Lund SM, Christiansen G, Kristensen SR, Heegaard NHH, Pedersen S. Mass-Spectrometry Based Proteome Comparison of Extracellular Vesicle Isolation Methods: Comparison of ME-kit, Size-Exclusion Chromatography, and High-Speed Centrifugation. Biomedicines. 8. PMID 32722497 DOI: 10.3390/biomedicines8080246 |
0.325 |
|
| 2020 |
Lanigan LT, Mackie M, Feine S, Hublin JJ, Schmitz RW, Wilcke A, Collins MJ, Cappellini E, Olsen JV, Taurozzi AJ, Welker F. Multi-protease analysis of Pleistocene bone proteomes. Journal of Proteomics. 103889. PMID 32652221 DOI: 10.1016/j.jprot.2020.103889 |
0.318 |
|
| 2020 |
Trolle Jensen TZ, Mackie M, Taurozzi AJ, Lanigan LT, Gundelach C, Olsen J, Sørensen SA, Collins MJ, Sørensen M, Schroeder H. The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark. Royal Society Open Science. 7: 191172. PMID 32218948 DOI: 10.1098/Rsos.191172 |
0.354 |
|
| 2020 |
Aasebø E, Berven FS, Bartaula-Brevik S, Stokowy T, Hovland R, Vaudel M, Døskeland SO, McCormack E, Batth TS, Olsen JV, Bruserud Ø, Selheim F, Hernandez-Valladares M. Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. Cancers. 12. PMID 32192169 DOI: 10.3390/Cancers12030709 |
0.307 |
|
| 2020 |
Bekker-Jensen DB, Martinez-Val A, Steigerwald S, Rüther PL, Fort KL, Arrey TN, Harder A, Makarov AA, Olsen JV. A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients. Molecular & Cellular Proteomics : McP. PMID 32051234 DOI: 10.1074/mcp.TIR119.001906 |
0.438 |
|
| 2020 |
Bekker-Jensen DB, Bernhardt OM, Hogrebe A, Martinez-Val A, Verbeke L, Gandhi T, Kelstrup CD, Reiter L, Olsen JV. Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries. Nature Communications. 11: 787. PMID 32034161 DOI: 10.1038/s41467-020-14609-1 |
0.368 |
|
| 2019 |
Tsutaya T, Mackie M, Koenig C, Sato T, Weber AW, Kato H, Olsen JV, Cappellini E. Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog. Scientific Reports. 9: 12841. PMID 31492911 DOI: 10.1038/s41598-019-49183-0 |
0.327 |
|
| 2018 |
Kelstrup CD, Aizikov K, Batth TS, Kreutzman A, Grinfeld D, Lange O, Mourad D, Makarov AA, Olsen JV. Limits for resolving isobaric tandem mass tag reporter ions using phase constrained spectrum deconvolution. Journal of Proteome Research. PMID 30220210 DOI: 10.1021/acs.jproteome.8b00381 |
0.37 |
|
| 2018 |
Bache N, Geyer PE, Bekker-Jensen DB, Hoerning O, Falkenby L, Treit PV, Doll S, Paron I, Müller JB, Meier F, Olsen JV, Vorm O, Mann M. A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics. Molecular & Cellular Proteomics : McP. PMID 30104208 DOI: 10.1074/Mcp.Tir118.000853 |
0.493 |
|
| 2018 |
Akimov V, Barrio-Hernandez I, Hansen SVF, Hallenborg P, Pedersen AK, Bekker-Jensen DB, Puglia M, Christensen SDK, Vanselow JT, Nielsen MM, Kratchmarova I, Kelstrup CD, Olsen JV, Blagoev B. UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites. Nature Structural & Molecular Biology. 25: 631-640. PMID 29967540 DOI: 10.1038/s41594-018-0084-y |
0.321 |
|
| 2018 |
Cramer CN, Kelstrup CD, Olsen JV, Haselmann KF, Nielsen PK. Generic Workflow for Mapping of Complex Disulfide Bonds Using In-Source Reduction and Extracted Ion Chromatograms from Data-Dependent Mass Spectrometry. Analytical Chemistry. PMID 29878755 DOI: 10.1021/acs.analchem.8b01603 |
0.357 |
|
| 2018 |
Hogrebe A, von Stechow L, Bekker-Jensen DB, Weinert BT, Kelstrup CD, Olsen JV. Benchmarking common quantification strategies for large-scale phosphoproteomics. Nature Communications. 9: 1045. PMID 29535314 DOI: 10.1038/s41467-018-03309-6 |
0.376 |
|
| 2018 |
Kelstrup CD, Bekker-Jensen DB, Arrey TN, Hogrebe A, Harder A, Olsen JV. Performance Evaluation of the Q Exactive HF-X for Shotgun Proteomics. Journal of Proteome Research. 17: 727-738. PMID 29183128 DOI: 10.1021/acs.jproteome.7b00602 |
0.359 |
|
| 2017 |
Bekker-Jensen DB, Kelstrup CD, Batth TS, Larsen SC, Haldrup C, Bramsen JB, Sørensen KD, Høyer S, Ørntoft TF, Andersen CL, Nielsen ML, Olsen JV. An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes. Cell Systems. PMID 28601559 DOI: 10.1016/j.cels.2017.05.009 |
0.406 |
|
| 2017 |
Pirone L, Xolalpa W, Sigurðsson JO, Ramirez J, Pérez C, González M, de Sabando AR, Elortza F, Rodriguez MS, Mayor U, Olsen JV, Barrio R, Sutherland JD. A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation. Scientific Reports. 7: 40756. PMID 28098257 DOI: 10.1038/srep40756 |
0.304 |
|
| 2016 |
von Stechow L, Olsen JV. Proteomics insights into DNA damage response and translating this knowledge to clinical strategies. Proteomics. PMID 27682984 DOI: 10.1002/pmic.201600018 |
0.326 |
|
| 2016 |
Jersie-Christensen RR, Sultan A, Olsen JV. Simple and Reproducible Sample Preparation for Single-Shot Phosphoproteomics with High Sensitivity. Methods in Molecular Biology (Clifton, N.J.). 1355: 251-60. PMID 26584931 DOI: 10.1007/978-1-4939-3049-4_17 |
0.383 |
|
| 2016 |
Batth TS, Olsen JV. Offline High pH Reversed-Phase Peptide Fractionation for Deep Phosphoproteome Coverage. Methods in Molecular Biology (Clifton, N.J.). 1355: 179-92. PMID 26584926 DOI: 10.1007/978-1-4939-3049-4_12 |
0.341 |
|
| 2015 |
Cramer CN, Haselmann KF, Olsen JV, Nielsen PK. Disulfide Linkage Characterization of Disulfide Bond-Containing Proteins and Peptides by Reducing Electrochemistry and Mass Spectrometry. Analytical Chemistry. PMID 26695097 DOI: 10.1021/acs.analchem.5b03148 |
0.36 |
|
| 2015 |
von Stechow L, Francavilla C, Olsen JV. Recent findings and technological advances in phosphoproteomics for cells and tissues. Expert Review of Proteomics. 12: 469-87. PMID 26400465 DOI: 10.1586/14789450.2015.1078730 |
0.308 |
|
| 2015 |
Gibbs-Seymour I, Oka Y, Rajendra E, Weinert BT, Passmore LA, Patel KJ, Olsen JV, Choudhary C, Bekker-Jensen S, Mailand N. Ubiquitin-SUMO circuitry controls activated fanconi anemia ID complex dosage in response to DNA damage. Molecular Cell. 57: 150-64. PMID 25557546 DOI: 10.1016/J.Molcel.2014.12.001 |
0.534 |
|
| 2014 |
Kelstrup CD, Jersie-Christensen RR, Batth TS, Arrey TN, Kuehn A, Kellmann M, Olsen JV. Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field Orbitrap mass spectrometer. Journal of Proteome Research. 13: 6187-95. PMID 25349961 DOI: 10.1021/pr500985w |
0.332 |
|
| 2014 |
Batth TS, Francavilla C, Olsen JV. Off-line high-pH reversed-phase fractionation for in-depth phosphoproteomics. Journal of Proteome Research. 13: 6176-86. PMID 25338131 DOI: 10.1021/pr500893m |
0.376 |
|
| 2014 |
Francavilla C, Hekmat O, Blagoev B, Olsen JV. SILAC-based temporal phosphoproteomics. Methods in Molecular Biology (Clifton, N.J.). 1188: 125-48. PMID 25059609 DOI: 10.1007/978-1-4939-1142-4_10 |
0.398 |
|
| 2014 |
Schou J, Kelstrup CD, Hayward DG, Olsen JV, Nilsson J. Comprehensive identification of SUMO2/3 targets and their dynamics during mitosis. Plos One. 9: e100692. PMID 24971888 DOI: 10.1371/journal.pone.0100692 |
0.349 |
|
| 2014 |
Kelstrup CD, Frese C, Heck AJ, Olsen JV, Nielsen ML. Analytical utility of mass spectral binning in proteomic experiments by SPectral Immonium Ion Detection (SPIID). Molecular & Cellular Proteomics : McP. 13: 1914-24. PMID 24895383 DOI: 10.1074/Mcp.O113.035915 |
0.371 |
|
| 2013 |
Olsen JV, Mann M. Status of large-scale analysis of post-translational modifications by mass spectrometry. Molecular & Cellular Proteomics : McP. 12: 3444-52. PMID 24187339 DOI: 10.1074/Mcp.O113.034181 |
0.543 |
|
| 2013 |
Tinti M, Kiemer L, Costa S, Miller ML, Sacco F, Olsen JV, Carducci M, Paoluzi S, Langone F, Workman CT, Blom N, Machida K, Thompson CM, Schutkowski M, Brunak S, et al. The SH2 domain interaction landscape. Cell Reports. 3: 1293-305. PMID 23545499 DOI: 10.1016/J.Celrep.2013.03.001 |
0.381 |
|
| 2013 |
Tyanova S, Cox J, Olsen J, Mann M, Frishman D. Phosphorylation variation during the cell cycle scales with structural propensities of proteins. Plos Computational Biology. 9: e1002842. PMID 23326221 DOI: 10.1371/Journal.Pcbi.1002842 |
0.413 |
|
| 2012 |
Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV. Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns. Cell Reports. 2: 419-31. PMID 22902405 DOI: 10.1016/J.Celrep.2012.07.006 |
0.591 |
|
| 2012 |
Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C. Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues. Molecular & Cellular Proteomics : McP. 11: 1578-85. PMID 22790023 DOI: 10.1074/Mcp.M112.017905 |
0.629 |
|
| 2012 |
Kelstrup CD, Young C, Lavallee R, Nielsen ML, Olsen JV. Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer. Journal of Proteome Research. 11: 3487-97. PMID 22537090 DOI: 10.1021/pr3000249 |
0.42 |
|
| 2012 |
Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C. Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response. Molecular Cell. 46: 212-25. PMID 22424773 DOI: 10.1016/J.Molcel.2012.01.026 |
0.623 |
|
| 2012 |
Cappellini E, Jensen LJ, Szklarczyk D, Ginolhac A, da Fonseca RA, Stafford TW, Holen SR, Collins MJ, Orlando L, Willerslev E, Gilbert MT, Olsen JV. Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins. Journal of Proteome Research. 11: 917-26. PMID 22103443 DOI: 10.1021/pr200721u |
0.321 |
|
| 2011 |
Pines A, Kelstrup CD, Vrouwe MG, Puigvert JC, Typas D, Misovic B, de Groot A, von Stechow L, van de Water B, Danen EH, Vrieling H, Mullenders LH, Olsen JV. Global phosphoproteome profiling reveals unanticipated networks responsive to cisplatin treatment of embryonic stem cells. Molecular and Cellular Biology. 31: 4964-77. PMID 22006019 DOI: 10.1128/MCB.05258-11 |
0.302 |
|
| 2011 |
Weinert BT, Wagner SA, Horn H, Henriksen P, Liu WR, Olsen JV, Jensen LJ, Choudhary C. Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation. Science Signaling. 4: ra48. PMID 21791702 DOI: 10.1126/Scisignal.2001902 |
0.609 |
|
| 2011 |
Lundby A, Olsen JV. GeLCMS for in-depth protein characterization and advanced analysis of proteomes. Methods in Molecular Biology (Clifton, N.J.). 753: 143-55. PMID 21604121 DOI: 10.1007/978-1-61779-148-2_10 |
0.408 |
|
| 2011 |
Kelstrup CD, Hekmat O, Francavilla C, Olsen JV. Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment. Journal of Proteome Research. 10: 2937-48. PMID 21526838 DOI: 10.1021/pr200154t |
0.302 |
|
| 2011 |
Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. Science Signaling. 4: rs3. PMID 21406692 DOI: 10.1126/Scisignal.2001570 |
0.418 |
|
| 2011 |
Olsen JV, Mann M. Effective representation and storage of mass spectrometry-based proteomic data sets for the scientific community. Science Signaling. 4: pe7. PMID 21325203 DOI: 10.1126/Scisignal.2001839 |
0.5 |
|
| 2011 |
Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M. Andromeda: a peptide search engine integrated into the MaxQuant environment. Journal of Proteome Research. 10: 1794-805. PMID 21254760 DOI: 10.1021/Pr101065J |
0.471 |
|
| 2010 |
Walther TC, Olsen JV, Mann M. Yeast expression proteomics by high-resolution mass spectrometry. Methods in Enzymology. 470: 259-80. PMID 20946814 DOI: 10.1016/S0076-6879(10)70011-2 |
0.516 |
|
| 2010 |
Nagaraj N, D'Souza RC, Cox J, Olsen JV, Mann M. Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation. Journal of Proteome Research. 9: 6786-94. PMID 20873877 DOI: 10.1021/Pr100637Q |
0.516 |
|
| 2010 |
Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M. Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell. 142: 967-80. PMID 20850016 DOI: 10.1016/J.Cell.2010.08.020 |
0.407 |
|
| 2010 |
Weintz G, Olsen JV, Frühauf K, Niedzielska M, Amit I, Jantsch J, Mages J, Frech C, Dölken L, Mann M, Lang R. The phosphoproteome of toll-like receptor-activated macrophages. Molecular Systems Biology. 6: 371. PMID 20531401 DOI: 10.1038/Msb.2010.29 |
0.397 |
|
| 2010 |
Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Science Signaling. 3: ra3. PMID 20068231 DOI: 10.1126/Scisignal.2000475 |
0.482 |
|
| 2010 |
Mortensen P, Gouw JW, Olsen JV, Ong SE, Rigbolt KT, Bunkenborg J, Cox J, Foster LJ, Heck AJ, Blagoev B, Andersen JS, Mann M. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. Journal of Proteome Research. 9: 393-403. PMID 19888749 DOI: 10.1021/Pr900721E |
0.714 |
|
| 2009 |
Choudhary C, Olsen JV, Brandts C, Cox J, Reddy PN, Böhmer FD, Gerke V, Schmidt-Arras DE, Berdel WE, Müller-Tidow C, Mann M, Serve H. Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. Molecular Cell. 36: 326-39. PMID 19854140 DOI: 10.1016/J.Molcel.2009.09.019 |
0.6 |
|
| 2009 |
Olsen JV, Schwartz JC, Griep-Raming J, Nielsen ML, Damoc E, Denisov E, Lange O, Remes P, Taylor D, Splendore M, Wouters ER, Senko M, Makarov A, Mann M, Horning S. A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Molecular & Cellular Proteomics : McP. 8: 2759-69. PMID 19828875 DOI: 10.1074/Mcp.M900375-Mcp200 |
0.45 |
|
| 2009 |
Gnad F, Godoy LMFd, Cox J, Neuhauser N, Ren S, Olsen JV, Mann M. High‐accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast Proteomics. 9: 4642-4652. PMID 19795423 DOI: 10.1002/Pmic.200900144 |
0.493 |
|
| 2009 |
Sharma K, Weber C, Bairlein M, Greff Z, Kéri G, Cox J, Olsen JV, Daub H. Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nature Methods. 6: 741-4. PMID 19749761 DOI: 10.1038/Nmeth.1373 |
0.311 |
|
| 2009 |
Pan C, Olsen JV, Daub H, Mann M. Global Effects of Kinase Inhibitors on Signaling Networks Revealed by Quantitative Phosphoproteomics Molecular & Cellular Proteomics. 8: 2796-2808. PMID 19651622 DOI: 10.1074/Mcp.M900285-Mcp200 |
0.388 |
|
| 2009 |
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M. Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science (New York, N.Y.). 325: 834-40. PMID 19608861 DOI: 10.1126/Science.1175371 |
0.673 |
|
| 2009 |
Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, Mann M. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics. Nature Protocols. 4: 698-705. PMID 19373234 DOI: 10.1038/Nprot.2009.36 |
0.526 |
|
| 2009 |
Oppermann FS, Gnad F, Olsen JV, Hornberger R, Greff Z, Kéri G, Mann M, Daub H. Large-scale proteomics analysis of the human kinome. Molecular & Cellular Proteomics : McP. 8: 1751-64. PMID 19369195 DOI: 10.1074/Mcp.M800588-Mcp200 |
0.485 |
|
| 2009 |
Hurd PJ, Bannister AJ, Halls K, Dawson MA, Vermeulen M, Olsen JV, Ismail H, Somers J, Mann M, Owen-Hughes T, Gout I, Kouzarides T. Phosporylation of histone H3 Thr-45 is linked to apoptosis Journal of Biological Chemistry. 284: 16575-16583. PMID 19363025 DOI: 10.1074/Jbc.M109.005421 |
0.366 |
|
| 2009 |
Olsen JV, Macek B. High accuracy mass spectrometry in large-scale analysis of protein phosphorylation. Methods in Molecular Biology (Clifton, N.J.). 492: 131-42. PMID 19241030 DOI: 10.1007/978-1-59745-493-3_7 |
0.4 |
|
| 2009 |
Macek B, Mann M, Olsen JV. Global and Site-Specific Quantitative Phosphoproteomics: Principles and Applications Annual Review of Pharmacology and Toxicology. 49: 199-221. PMID 18834307 DOI: 10.1146/Annurev.Pharmtox.011008.145606 |
0.497 |
|
| 2008 |
Pan C, Gnad F, Olsen JV, Mann M. Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors Proteomics. 8: 4534-4546. PMID 18846507 DOI: 10.1002/Pmic.200800105 |
0.469 |
|
| 2008 |
de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature. 455: 1251-4. PMID 18820680 DOI: 10.1038/Nature07341 |
0.519 |
|
| 2008 |
Bandeira N, Olsen JV, Mann JV, Mann M, Pevzner PA. Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. Bioinformatics (Oxford, England). 24: i416-23. PMID 18785330 DOI: 10.1093/bioinformatics/btn184 |
0.464 |
|
| 2008 |
Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Körner R, Greff Z, Kéri G, Stemmann O, Mann M. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. Molecular Cell. 31: 438-48. PMID 18691976 DOI: 10.1016/J.Molcel.2008.07.007 |
0.441 |
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| 2008 |
Knipscheer P, Flotho A, Klug H, Olsen JV, van Dijk WJ, Fish A, Johnson ES, Mann M, Sixma TK, Pichler A. Ubc9 sumoylation regulates SUMO target discrimination. Molecular Cell. 31: 371-82. PMID 18691969 DOI: 10.1016/J.Molcel.2008.05.022 |
0.328 |
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| 2008 |
Mertins P, Eberl HC, Renkawitz J, Olsen JV, Tremblay ML, Mann M, Ullrich A, Daub H. Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics Molecular & Cellular Proteomics. 7: 1763-1777. PMID 18515860 DOI: 10.1074/Mcp.M800196-Mcp200 |
0.509 |
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| 2008 |
Macek B, Gnad F, Soufi B, Kumar C, Olsen JV, Mijakovic I, Mann M. Phosphoproteome Analysis of E. coli Reveals Evolutionary Conservation of Bacterial Ser/Thr/Tyr Phosphorylation Molecular & Cellular Proteomics. 7: 299-307. PMID 17938405 DOI: 10.1074/Mcp.M700311-Mcp200 |
0.441 |
|
| 2007 |
Gnad F, Ren S, Cox J, Olsen JV, Macek B, Oroshi M, Mann M. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biology. 8: 1-13. PMID 18039369 DOI: 10.1186/Gb-2007-8-11-R250 |
0.41 |
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| 2007 |
Olsen JV, Macek B, Lange O, Makarov A, Horning S, Mann M. Higher-energy C-trap dissociation for peptide modification analysis. Nature Methods. 4: 709-12. PMID 17721543 DOI: 10.1038/Nmeth1060 |
0.508 |
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| 2007 |
Notenboom V, Hibbert RG, van Rossum-Fikkert SE, Olsen JV, Mann M, Sixma TK. Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification. Nucleic Acids Research. 35: 5819-30. PMID 17720710 DOI: 10.1093/Nar/Gkm615 |
0.305 |
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| 2007 |
Schandorff S, Olsen JV, Bunkenborg J, Blagoev B, Zhang Y, Andersen JS, Mann M. A mass spectrometry-friendly database for cSNP identification. Nature Methods. 4: 465-6. PMID 17538625 DOI: 10.1038/Nmeth0607-465 |
0.496 |
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| 2007 |
Knipscheer P, van Dijk WJ, Olsen JV, Mann M, Sixma TK. Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation. The Embo Journal. 26: 2797-807. PMID 17491593 DOI: 10.1038/Sj.Emboj.7601711 |
0.312 |
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| 2007 |
Dengjel J, Akimov V, Olsen JV, Bunkenborg J, Mann M, Blagoev B, Andersen JS. Quantitative proteomic assessment of very early cellular signaling events Nature Biotechnology. 25: 566-568. PMID 17450129 DOI: 10.1038/Nbt1301 |
0.386 |
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| 2007 |
Klein C, Aivaliotis M, Olsen JV, Falb M, Besir H, Scheffer B, Bisle B, Tebbe A, Konstantinidis K, Siedler F, Pfeiffer F, Mann M, Oesterhelt D. The low molecular weight proteome of Halobacterium salinarum. Journal of Proteome Research. 6: 1510-8. PMID 17326674 DOI: 10.1021/Pr060634Q |
0.494 |
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| 2007 |
Macek B, Mijakovic I, Olsen JV, Gnad F, Kumar C, Jensen PR, Mann M. The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis Molecular and Cellular Proteomics. 6: 697-707. PMID 17218307 DOI: 10.1074/Mcp.M600464-Mcp200 |
0.476 |
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| 2007 |
Olsen JV, Nielsen PA, Andersen JR, Mann M, Wiśniewski JR. Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: mapping of neurotransmitter receptors and ion channels. Brain Research. 1134: 95-106. PMID 17207779 DOI: 10.1016/J.Brainres.2006.11.082 |
0.389 |
|
| 2007 |
Mann K, Olsen JV, Maček B, Gnad F, Mann M. Phosphoproteins of the chicken eggshell calcified layer. Proteomics. 7: 106-115. PMID 17152097 DOI: 10.1002/Pmic.200600635 |
0.47 |
|
| 2007 |
Zhang Y, Zhang Y, Adachi J, Olsen JV, Shi R, de Souza G, Pasini E, Foster LJ, Macek B, Zougman A, Kumar C, Wisniewski JR, Jun W, Mann M. MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. Nucleic Acids Research. 35: D771-9. PMID 17090601 DOI: 10.1093/Nar/Gkl784 |
0.535 |
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| 2006 |
Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M. In-gel digestion for mass spectrometric characterization of proteins and proteomes Nature Protocols. 1: 2856-2860. PMID 17406544 DOI: 10.1038/Nprot.2006.468 |
0.517 |
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| 2006 |
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell. 127: 635-648. PMID 17081983 DOI: 10.1016/J.Cell.2006.09.026 |
0.478 |
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| 2006 |
Albrethsen J, Bøgebo R, Olsen J, Raskov H, Gammeltoft S. Preanalytical and analytical variation of surface-enhanced laser desorption-ionization time-of-flight mass spectrometry of human serum. Clinical Chemistry and Laboratory Medicine. 44: 1243-1252. PMID 17032137 DOI: 10.1515/Cclm.2006.228 |
0.305 |
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| 2006 |
Adachi J, Kumar C, Zhang Y, Olsen JV, Mann M. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biology. 7: 1-16. PMID 16948836 DOI: 10.1186/Gb-2006-7-9-R80 |
0.491 |
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| 2006 |
Godoy LMFd, Olsen JV, Souza GAd, Li G, Mortensen P, Mann M. Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system Genome Biology. 7: 1-15. PMID 16784548 DOI: 10.1186/Gb-2006-7-6-R50 |
0.558 |
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| 2006 |
Macek B, Waanders LF, Olsen JV, Mann M. Top-down Protein Sequencing and MS3 on a Hybrid Linear Quadrupole Ion Trap-Orbitrap Mass Spectrometer Molecular & Cellular Proteomics. 5: 949-958. PMID 16478717 DOI: 10.1074/Mcp.T500042-Mcp200 |
0.554 |
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| 2005 |
Olsen JV, de Godoy LM, Li G, Macek B, Mortensen P, Pesch R, Makarov A, Lange O, Horning S, Mann M. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Molecular & Cellular Proteomics : McP. 4: 2010-21. PMID 16249172 DOI: 10.1074/Mcp.T500030-Mcp200 |
0.506 |
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| 2005 |
Nielsen PA, Olsen JV, Podtelejnikov AV, Andersen JR, Mann M, Wisniewski JR. Proteomic mapping of brain plasma membrane proteins. Molecular & Cellular Proteomics : McP. 4: 402-8. PMID 15684408 DOI: 10.1074/mcp.T500002-MCP200 |
0.409 |
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| 2005 |
Gruhler A, Olsen JV, Mohammed S, Mortensen P, Færgeman NJ, Mann M, Jensen ON. Quantitative Phosphoproteomics Applied to the Yeast Pheromone Signaling Pathway Molecular & Cellular Proteomics. 4: 310-327. PMID 15665377 DOI: 10.1074/Mcp.M400219-Mcp200 |
0.572 |
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| 2004 |
Olsen JV, Mann M. Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation Proceedings of the National Academy of Sciences of the United States of America. 101: 13417-13422. PMID 15347803 DOI: 10.1073/Pnas.0405549101 |
0.501 |
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| 2004 |
Hinsby AM, Olsen JV, Mann M. Tyrosine Phosphoproteomics of Fibroblast Growth Factor Signaling A ROLE FOR INSULIN RECEPTOR SUBSTRATE-4 Journal of Biological Chemistry. 279: 46438-46447. PMID 15316024 DOI: 10.1074/Jbc.M404537200 |
0.444 |
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| 2004 |
Olsen JV, Ong SE, Mann M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Molecular & Cellular Proteomics : McP. 3: 608-14. PMID 15034119 DOI: 10.1074/Mcp.T400003-Mcp200 |
0.672 |
|
| 2004 |
Olsen JV, Andersen JR, Nielsen PA, Nielsen ML, Figeys D, Mann M, Wisniewski JR. HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain. Molecular & Cellular Proteomics : McP. 3: 82-92. PMID 14610161 DOI: 10.1074/Mcp.M300103-Mcp200 |
0.448 |
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| 2003 |
Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES, Mann M. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell. 115: 629-40. PMID 14651853 DOI: 10.1016/S0092-8674(03)00926-7 |
0.375 |
|
| 2003 |
Hinsby AM, Olsen JV, Bennett KL, Mann M. Signaling initiated by overexpression of the fibroblast growth factor receptor-1 investigated by mass spectrometry. Molecular & Cellular Proteomics. 2: 29-36. PMID 12601080 DOI: 10.1074/Mcp.M200075-Mcp200 |
0.492 |
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