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Chris Sander, PhD - Publications

Affiliations: 
1986-1997 Biocomputing EMBL Heidelberg 
 1995-1998 Research European Bioinformatics Institute (EBI), UK 
 2002-2015 Computational Biology Center Memorial Sloan Kettering Cancer Center, Rockville Centre, NY, United States 
 2016- Cell Biology Harvard Medical School 
Area:
computational biology, structural biology, cancer biology, evolutionary biology
Website:
http://sanderlab.org
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Year Citation  Score
2024 Notin P, Rollins N, Gal Y, Sander C, Marks D. Machine learning for functional protein design. Nature Biotechnology. 42: 216-228. PMID 38361074 DOI: 10.1038/s41587-024-02127-0  0.554
2024 Peidli S, Green TD, Shen C, Gross T, Min J, Garda S, Yuan B, Schumacher LJ, Taylor-King JP, Marks DS, Luna A, Blüthgen N, Sander C. scPerturb: harmonized single-cell perturbation data. Nature Methods. PMID 38279009 DOI: 10.1038/s41592-023-02144-y  0.527
2023 Thadani NN, Gurev S, Notin P, Youssef N, Rollins NJ, Ritter D, Sander C, Gal Y, Marks DS. Learning from prepandemic data to forecast viral escape. Nature. 622: 818-825. PMID 37821700 DOI: 10.1038/s41586-023-06617-0  0.534
2023 Fram B, Truebridge I, Su Y, Riesselman AJ, Ingraham JB, Passera A, Napier E, Thadani NN, Lim S, Roberts K, Kaur G, Stiffler M, Marks DS, Bahl CD, Khan AR, ... Sander C, et al. Simultaneous enhancement of multiple functional properties using evolution-informed protein design. Biorxiv : the Preprint Server For Biology. PMID 37214973 DOI: 10.1101/2023.05.09.539914  0.577
2023 Placido D, Yuan B, Hjaltelin JX, Zheng C, Haue AD, Chmura PJ, Yuan C, Kim J, Umeton R, Antell G, Chowdhury A, Franz A, Brais L, Andrews E, Marks DS, ... ... Sander C, et al. A deep learning algorithm to predict risk of pancreatic cancer from disease trajectories. Nature Medicine. PMID 37156936 DOI: 10.1038/s41591-023-02332-5  0.509
2022 Yan G, Luna A, Wang H, Bozorgui B, Li X, Sanchez M, Dereli Z, Kahraman N, Kara G, Chen X, Zheng C, McGrail D, Sahni N, Lu Y, Babur O, ... ... Sander C, et al. BET inhibition induces vulnerability to MCL1 targeting through upregulation of fatty acid synthesis pathway in breast cancer. Cell Reports. 40: 111304. PMID 36103824 DOI: 10.1016/j.celrep.2022.111304  0.774
2022 Li X, Dowling EK, Yan G, Dereli Z, Bozorgui B, Imanirad P, Elnaggar JH, Luna A, Menter DG, Pilie PG, Yap TA, Kopetz S, Sander C, Korkut A. Precision combination therapies based on recurrent oncogenic co-alterations. Cancer Discovery. PMID 35412613 DOI: 10.1158/2159-8290.CD-21-0832  0.726
2021 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, ... ... Sander C, et al. COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10851. PMID 34939300 DOI: 10.15252/msb.202110851  0.756
2021 Luna A, Siper MC, Korkut A, Durupinar F, Dogrusoz U, Aslan JE, Sander C, Demir E, Babur O. Analyzing causal relationships in proteomic profiles using CausalPath. Star Protocols. 2: 100955. PMID 34877547 DOI: 10.1016/j.xpro.2021.100955  0.77
2021 Wong JV, Franz M, Siper MC, Fong D, Durupinar F, Dallago C, Luna A, Giorgi JM, Rodchenkov I, Babur Ö, Bachman JA, Gyori B, Demir E, Bader GD, Sander C. Author-sourced capture of pathway knowledge in computable form using Biofactoid. Elife. 10. PMID 34860157 DOI: 10.7554/eLife.68292  0.726
2021 Gillespie M, Jassal B, Stephan R, Milacic M, Rothfels K, Senff-Ribeiro A, Griss J, Sevilla C, Matthews L, Gong C, Deng C, Varusai T, Ragueneau E, Haider Y, May B, ... ... Sander C, et al. The reactome pathway knowledgebase 2022. Nucleic Acids Research. PMID 34788843 DOI: 10.1093/nar/gkab1028  0.49
2021 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, ... ... Sander C, et al. COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 17: e10387. PMID 34664389 DOI: 10.15252/msb.202110387  0.78
2021 Babur Ö, Luna A, Korkut A, Durupinar F, Siper MC, Dogrusoz U, Vaca Jacome AS, Peckner R, Christianson KE, Jaffe JD, Spellman PT, Aslan JE, Sander C, Demir E. Causal interactions from proteomic profiles: Molecular data meet pathway knowledge. Patterns (New York, N.Y.). 2: 100257. PMID 34179843 DOI: 10.1016/j.patter.2021.100257  0.766
2021 Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, ... ... Sander C, et al. PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research. PMID 33999203 DOI: 10.1093/nar/gkab354  0.812
2021 Shin JE, Riesselman AJ, Kollasch AW, McMahon C, Simon E, Sander C, Manglik A, Kruse AC, Marks DS. Protein design and variant prediction using autoregressive generative models. Nature Communications. 12: 2403. PMID 33893299 DOI: 10.1038/s41467-021-22732-w  0.561
2020 Yuan B, Shen C, Luna A, Korkut A, Marks DS, Ingraham J, Sander C. CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy. Cell Systems. PMID 33373583 DOI: 10.1016/j.cels.2020.11.013  0.695
2020 Reguant R, Antipin Y, Sheridan R, Dallago C, Diamantoukos D, Luna A, Sander C, Gauthier NP. AlignmentViewer: Sequence Analysis of Large Protein Families. F1000research. 9. PMID 33123346 DOI: 10.12688/F1000Research.22242.1  0.358
2020 Nyman E, Stein RR, Jing X, Wang W, Marks B, Zervantonakis IK, Korkut A, Gauthier NP, Sander C. Perturbation biology links temporal protein changes to drug responses in a melanoma cell line. Plos Computational Biology. 16: e1007909. PMID 32667922 DOI: 10.1371/Journal.Pcbi.1007909  0.635
2020 Shen J, Yuan B, Luna A, Korkut A, Marks D, Ingraham J, Sander C. Abstract 2102: Interpretable machine learning for perturbation biology Cancer Research. 80: 2102-2102. DOI: 10.1158/1538-7445.Am2020-2102  0.719
2019 Stiffler MA, Poelwijk FJ, Brock KP, Stein RR, Riesselman A, Teyra J, Sidhu SS, Marks DS, Gauthier NP, Sander C. Protein Structure from Experimental Evolution. Cell Systems. PMID 31838147 DOI: 10.1016/J.Cels.2019.11.008  0.626
2019 Guo T, Luna A, Rajapakse VN, Koh CC, Wu Z, Liu W, Sun Y, Gao H, Menden MP, Xu C, Calzone L, Martignetti L, Auwerx C, Buljan M, Banaei-Esfahani A, ... ... Sander C, et al. Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. Iscience. 21: 664-680. PMID 31733513 DOI: 10.1016/J.Isci.2019.10.059  0.513
2019 Rodchenkov I, Babur O, Luna A, Aksoy BA, Wong JV, Fong D, Franz M, Siper MC, Cheung M, Wrana M, Mistry H, Mosier L, Dlin J, Wen Q, O'Callaghan C, ... ... Sander C, et al. Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. Nucleic Acids Research. PMID 31647099 DOI: 10.1093/Nar/Gkz946  0.792
2019 Sala D, Huang YJ, Cole CA, Snyder D, Liu G, Ishida Y, Swapna GVT, Brock KP, Sander C, Fidelis K, Kryshtafovych A, Inouye M, Tejero R, Valafar H, Rosato A, et al. Protein Structure Prediction Assisted with Sparse NMR Data in CASP13. Proteins. PMID 31603581 DOI: 10.1002/Prot.25837  0.352
2019 Vedanayagam J, Chatila WK, Aksoy BA, Majumdar S, Skanderup AJ, Demir E, Schultz N, Sander C, Lai EC. Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis. Nature Communications. 10: 3682. PMID 31417090 DOI: 10.1038/S41467-019-11610-1  0.675
2019 Rollins NJ, Brock KP, Poelwijk FJ, Stiffler MA, Gauthier NP, Sander C, Marks DS. Inferring protein 3D structure from deep mutation scans. Nature Genetics. PMID 31209393 DOI: 10.1038/S41588-019-0432-9  0.609
2019 Xu J, Reznik E, Lee HJ, Gundem G, Jonsson P, Sarungbam J, Bialik A, Sanchez-Vega F, Creighton CJ, Hoekstra JG, Zhang L, Sajjakulnukit P, Kremer D, Tolstyka ZP, Casuscelli J, ... ... Sander C, et al. Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma. Elife. 8. PMID 30924768 DOI: 10.7554/Elife.38986  0.611
2019 Huang YJ, Brock KP, Ishida Y, Swapna GVT, Inouye M, Marks DS, Sander C, Montelione GT. Combining Evolutionary Covariance and NMR Data for Protein Structure Determination. Methods in Enzymology. 614: 363-392. PMID 30611430 DOI: 10.1016/Bs.Mie.2018.11.004  0.616
2019 Xu J, Reznik E, Lee H, Gundem G, Jonsson P, Sarungbam J, Bialik A, Sanchez-Vega F, Creighton CJ, Hoekstra J, Zhang L, Sajjakulnukit P, Kremer D, Tolstyka Z, Casuscelli J, ... ... Sander C, et al. Author response: Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma Elife. DOI: 10.7554/Elife.38986.025  0.571
2019 Luna A, Wang H, Babur O, Sander C, Korkut A. Abstract 3820: Discovery of adaptive resistance pathways and anti-resistance combination therapies from phosphoproteomic data using graphical models Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-3820  0.679
2019 Gao J, Mazor T, Abeshouse A, Bruijn Id, Gross B, Kalletla K, Kumari P, Kundra R, Li X, Lindsay J, Lisman A, Lukasse P, Madupuri R, Ochoa A, Plantalech O, ... ... Sander C, et al. Abstract 3209: The cBioPortal for Cancer Genomics Cancer Research. 80: 3209-3209. DOI: 10.1158/1538-7445.Am2020-3209  0.362
2018 Huang YJ, Brock KP, Sander C, Marks DS, Montelione GT. A Hybrid Approach for Protein Structure Determination Combining Sparse NMR with Evolutionary Coupling Sequence Data. Advances in Experimental Medicine and Biology. 1105: 153-169. PMID 30617828 DOI: 10.1007/978-981-13-2200-6_10  0.618
2018 Rajapakse VN, Luna A, Yamade M, Loman L, Varma S, Sunshine M, Iorio F, Sousa FG, Elloumi F, Aladjem MI, Thomas A, Sander C, Kohn KW, Benes CH, Garnett M, et al. CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines. Iscience. PMID 30553813 DOI: 10.1016/J.Isci.2018.11.029  0.363
2018 Hopf TA, Green AG, Schubert B, Mersmann S, Schärfe CPI, Ingraham JB, Toth-Petroczy A, Brock K, Riesselman AJ, Palmedo P, Kang C, Sheridan R, Draizen EJ, Dallago C, Sander C, et al. The EVcouplings Python framework for coevolutionary sequence analysis. Bioinformatics (Oxford, England). PMID 30304492 DOI: 10.1093/Bioinformatics/Bty862  0.63
2018 Wedge DC, Gundem G, Mitchell T, Woodcock DJ, Martincorena I, Ghori M, Zamora J, Butler A, Whitaker H, Kote-Jarai Z, Alexandrov LB, Van Loo P, Massie CE, Dentro S, Warren AY, ... ... Sander C, et al. Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets. Nature Genetics. PMID 29662167 DOI: 10.1038/S41588-018-0086-Z  0.312
2018 Sanchez-Vega F, Mina M, Armenia J, Chatila WK, Luna A, La KC, Dimitriadoy S, Liu DL, Kantheti HS, Saghafinia S, Chakravarty D, Daian F, Gao Q, Bailey MH, Liang WW, ... ... Sander C, et al. Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell. 173: 321-337.e10. PMID 29625050 DOI: 10.1016/J.Cell.2018.03.035  0.332
2018 Way GP, Sanchez-Vega F, La K, Armenia J, Chatila WK, Luna A, Sander C, Cherniack AD, Mina M, Ciriello G, Schultz N, Sanchez Y, Greene CS. Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas. Cell Reports. 23: 172-180.e3. PMID 29617658 DOI: 10.1016/J.Celrep.2018.03.046  0.319
2018 Reznik E, Luna A, Aksoy BA, Liu EM, La K, Ostrovnaya I, Creighton CJ, Hakimi AA, Sander C. A Landscape of Metabolic Variation across Tumor Types. Cell Systems. PMID 29396322 DOI: 10.1016/J.Cels.2017.12.014  0.751
2018 Gao J, Mazor T, Ciftci E, Raman P, Lukasse P, Bahceci I, Sigaras A, Abeshouse A, Bruijn Id, Gross B, Kundra R, Lisman A, Ochoa A, Sheridan R, Su J, ... ... Sander C, et al. Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data Cancer Research. 78: 923-923. DOI: 10.1158/1538-7445.Am2018-923  0.363
2018 Sanchez-Vega F, Mina M, Armenia J, Chatila WK, Luna A, La K, Dimitriadoy S, Liu DL, Kantheti HS, Heins Z, Ochoa A, Gross B, Gao J, Zhang H, Kundra R, ... ... Sander C, et al. Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas Cancer Research. 78: 3302-3302. DOI: 10.1158/1538-7445.Am2018-3302  0.357
2018 Luna A, Babur Ö, Yan G, Demir E, Sander C, Korkut A. Abstract 2838: Discovery of adaptive resistance pathways and anti-resistance combination therapies in cancer from phosphoproteomic data Cancer Research. 78: 2838-2838. DOI: 10.1158/1538-7445.Am2018-2838  0.627
2018 Wong JV, Luna A, Demir E, Rodchenkov I, Babur Ö, Sander C, Bader GD. Abstract 1284: How can you interpret gene lists from -omics experiments Cancer Research. 78: 1284-1284. DOI: 10.1158/1538-7445.Am2018-1284  0.358
2018 Brock K, Sander C, Marks D. Using evolutionary couplings to predict contacts and build structures Acta Crystallographica Section A. 74. DOI: 10.1107/S2053273318094536  0.558
2018 Sander C, Marks D. Solutions to the computational protein folding problem The Faseb Journal. 32. DOI: 10.1096/Fasebj.2018.32.1_Supplement.377.1  0.586
2017 Aksoy BA, Dancík V, Smith K, Mazerik JN, Ji Z, Gross B, Nikolova O, Jaber N, Califano A, Schreiber SL, Gerhard DS, Hermida LC, Jagu S, Sander C, Floratos A, et al. CTD2 Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220450 DOI: 10.1093/Database/Bax054  0.669
2017 Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, ... ... Sander C, et al. Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles. Cell Reports. 19: 2878-2880. PMID 28658632 DOI: 10.1016/J.Celrep.2017.06.008  0.604
2017 Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, ... ... Sander C, et al. Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles. Cell Reports. 18: 2780-2794. PMID 28297679 DOI: 10.1016/J.Celrep.2017.02.033  0.612
2017 Gao J, Chang MT, Johnsen HC, Gao SP, Sylvester BE, Sumer SO, Zhang H, Solit DB, Taylor BS, Schultz N, Sander C. 3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets. Genome Medicine. 9: 4. PMID 28115009 DOI: 10.1186/S13073-016-0393-X  0.313
2017 Reznik E, Wang Q, La K, Schultz N, Sander C. Mitochondrial respiratory gene expression is suppressed in many cancers. Elife. 6. PMID 28099114 DOI: 10.7554/Elife.21592  0.606
2017 Hopf TA, Ingraham JB, Poelwijk FJ, Schärfe CP, Springer M, Sander C, Marks DS. Mutation effects predicted from sequence co-variation. Nature Biotechnology. PMID 28092658 DOI: 10.1038/Nbt.3769  0.704
2017 Wong JV, Luna A, Demir E, Rodchenkov I, Babur Ö, Sander C, Bader G. How can you interpret gene lists from -omics experiments? F1000research. 6. DOI: 10.7490/F1000Research.1115132.1  0.467
2017 Gao J, Ciftci E, Raman P, Lukasse P, Bahceci I, Abeshouse A, Chen H, Bruijn Id, Gross B, Heins Z, Kundra R, Lisman A, Ochoa A, Sheridan R, Sumer O, ... ... Sander C, et al. Abstract 2607: The cBioPortal for Cancer Genomics: an open source platform for accessing and interpreting complex cancer genomics data in the era of precision medicine Cancer Research. 77: 2607-2607. DOI: 10.1158/1538-7445.Am2017-2607  0.364
2017 Rajapakse VN, Luna A, Sander C, Reinhold WC, Pommier Y. Abstract 2586: CellMinerCDB: Enabling cross-database exploration of molecular pharmacology data and response determinant discovery in cancer cell lines Cancer Research. 77: 2586-2586. DOI: 10.1158/1538-7445.Am2017-2586  0.301
2016 Toth-Petroczy A, Palmedo P, Ingraham J, Hopf TA, Berger B, Sander C, Marks DS. Structured States of Disordered Proteins from Genomic Sequences. Cell. 167: 158-170.e12. PMID 27662088 DOI: 10.1016/J.Cell.2016.09.010  0.707
2016 Kusebauch U, Campbell DS, Deutsch EW, Chu CS, Spicer DA, Brusniak MY, Slagel J, Sun Z, Stevens J, Grimes B, Shteynberg D, Hoopmann MR, Blattmann P, Ratushny AV, Rinner O, ... ... Sander C, et al. Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome. Cell. PMID 27453469 DOI: 10.1016/J.Cell.2016.06.041  0.336
2016 Gerhard DS, Clemons PA, Shamji AF, Hon C, Wagner BK, Schreiber SL, Krasnitz A, Sordella R, Sander C, Lowe SW, Powers S, Smith K, Aburi M, Iavarone A, Lasorella A, et al. Transforming Big Data into cancer-relevant insight: An initial, multi-tier approach to assess reproducibility and relevance. Molecular Cancer Research : McR. PMID 27401613 DOI: 10.1158/1541-7786.Mcr-16-0090  0.326
2016 Weinreb C, Riesselman AJ, Ingraham JB, Gross T, Sander C, Marks DS. 3D RNA and Functional Interactions from Evolutionary Couplings. Cell. PMID 27087444 DOI: 10.1016/J.Cell.2016.03.030  0.703
2016 Chen F, Zhang Y, Şenbabaoğlu Y, Ciriello G, Yang L, Reznik E, Shuch B, Micevic G, De Velasco G, Shinbrot E, Noble MS, Lu Y, Covington KR, Xi L, Drummond JA, ... ... Sander C, et al. Multilevel Genomics-Based Taxonomy of Renal Cell Carcinoma. Cell Reports. PMID 26947078 DOI: 10.1016/J.Celrep.2016.02.024  0.614
2016 Şenbabaoğlu Y, Sümer SO, Sánchez-Vega F, Bemis D, Ciriello G, Schultz N, Sander C. A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers. Plos Computational Biology. 12: e1004765. PMID 26928298 DOI: 10.1371/Journal.Pcbi.1004765  0.375
2016 Reznik E, Miller ML, Şenbabaoğlu Y, Riaz N, Sarungbam J, Tickoo SK, Al-Ahmadie HA, Lee W, Seshan VE, Hakimi AA, Sander C. Mitochondrial DNA copy number variation across human cancers. Elife. 5. PMID 26901439 DOI: 10.7554/Elife.10769  0.607
2016 Hakimi AA, Reznik E, Lee CH, Creighton CJ, Brannon AR, Luna A, Aksoy BA, Liu EM, Shen R, Lee W, Chen Y, Stirdivant SM, Russo P, Chen YB, Tickoo SK, ... ... Sander C, et al. An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma. Cancer Cell. 29: 104-116. PMID 26766592 DOI: 10.1016/J.Ccell.2015.12.004  0.742
2016 Reznik E, Wang Q, La K, Schultz N, Sander C. Author response: Mitochondrial respiratory gene expression is suppressed in many cancers Elife. DOI: 10.7554/Elife.21592.018  0.57
2016 Gao J, Lindsay J, Watt S, Bahceci I, Lukasse P, Abeshouse A, Chen H, Bruijn Id, Gross B, Li D, Kundra R, Heins Z, Reis-Filho J, Sumer O, Sun Y, ... ... Sander C, et al. Abstract 5277: The cBioPortal for cancer genomics and its application in precision oncology Cancer Research. 76: 5277-5277. DOI: 10.1158/1538-7445.Am2016-5277  0.353
2016 Gao J, Chang MT, Sylvester BE, Johnsen HC, Gao SP, Sumer SO, Solit DB, Taylor BS, Schultz N, Sander C. Abstract 3606: Identification of oncogenic mutation hotspots via three-dimensional proximity Cancer Research. 76: 3606-3606. DOI: 10.1158/1538-7445.Am2016-3606  0.354
2016 Rosenzweig B, Reznik E, Shingarev R, Zabor EC, Stirdivant S, Sander C, Hsieh JJ, Jaimes EA, Russo P, Hakimi AA, Coleman JA. MP85-20 METABOLOMICS AND POST-NEPHRECTOMY RENAL FUNCTION PREDICTION Journal of Urology. 195. DOI: 10.1016/J.Juro.2016.02.2286  0.564
2015 Miller ML, Reznik E, Gauthier NP, Aksoy BA, Korkut A, Gao J, Ciriello G, Schultz N, Sander C. Pan-Cancer Analysis of Mutation Hotspots in Protein Domains. Cell Systems. 1: 197-209. PMID 27135912 DOI: 10.1016/J.Cels.2015.08.014  0.787
2015 Luna A, Babur Ö, Aksoy BA, Demir E, Sander C. PaxtoolsR: Pathway Analysis in R Using Pathway Commons. Bioinformatics (Oxford, England). PMID 26685306 DOI: 10.1093/Bioinformatics/Btv733  0.777
2015 Luna A, Rajapakse VN, Sousa FG, Gao J, Schultz N, Varma S, Reinhold W, Sander C, Pommier Y. rcellminer: Exploring Molecular Profiles and Drug Response of the NCI-60 Cell Lines in R. Bioinformatics (Oxford, England). PMID 26635141 DOI: 10.1093/Bioinformatics/Btv701  0.319
2015 Gauthier NP, Reznik E, Gao J, Sumer SO, Schultz N, Sander C, Miller ML. MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer. Nucleic Acids Research. PMID 26590264 DOI: 10.1093/Nar/Gkv1132  0.644
2015 Korkut A, Wang W, Demir E, Aksoy BA, Jing X, Molinelli EJ, Babur Ö, Bemis DL, Onur Sumer S, Solit DB, Pratilas CA, Sander C. Perturbation biology nominates upstream-downstream drug combinations in RAF inhibitor resistant melanoma cells. Elife. 4. PMID 26284497 DOI: 10.7554/Elife.04640  0.787
2015 Stein RR, Marks DS, Sander C. Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models. Plos Computational Biology. 11: e1004182. PMID 26225866 DOI: 10.1371/Journal.Pcbi.1004182  0.723
2015 Creixell P, Reimand J, Haider S, Wu G, Shibata T, Vazquez M, Mustonen V, Gonzalez-Perez A, Pearson J, Sander C, Raphael BJ, Marks DS, Ouellette BFF, Valencia A, Bader GD, et al. Pathway and network analysis of cancer genomes. Nature Methods. 12: 615-621. PMID 26125594 DOI: 10.1038/Nmeth.3440  0.783
2015 Tang Y, Huang YJ, Hopf TA, Sander C, Marks DS, Montelione GT. Protein structure determination by combining sparse NMR data with evolutionary couplings. Nature Methods. PMID 26121406 DOI: 10.1038/Nmeth.3455  0.713
2015 Ebhardt HA, Root A, Sander C, Aebersold R. Applications of targeted proteomics in systems biology and translational medicine. Proteomics. PMID 26097198 DOI: 10.1002/Pmic.201500004  0.312
2015 Brat DJ, Verhaak RG, Aldape KD, Yung WK, Salama SR, Cooper LA, Rheinbay E, Miller CR, Vitucci M, Morozova O, Robertson AG, Noushmehr H, Laird PW, Cherniack AD, ... ... Sander C, et al. Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. The New England Journal of Medicine. 372: 2481-98. PMID 26061751 DOI: 10.1056/Nejmoa1402121  0.642
2015 Aad G, Abbott B, Abdallah J, Abdinov O, Aben R, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Abreu R, Abulaiti Y, Acharya BS, Adamczyk L, Adams DL, Adelman J, ... ... Sander C, et al. Combined Measurement of the Higgs Boson Mass in pp Collisions at sqrt[s]=7 and 8 TeV with the ATLAS and CMS Experiments. Physical Review Letters. 114: 191803. PMID 26024162 DOI: 10.1103/Physrevlett.114.191803  0.404
2015 Reznik E, Sander C. Extensive decoupling of metabolic genes in cancer. Plos Computational Biology. 11: e1004176. PMID 25961905 DOI: 10.1371/Journal.Pcbi.1004176  0.595
2015 Babur Ö, Gönen M, Aksoy BA, Schultz N, Ciriello G, Sander C, Demir E. Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations. Genome Biology. 16: 45. PMID 25887147 DOI: 10.1186/S13059-015-0612-6  0.796
2015 Hayat S, Sander C, Marks DS, Elofsson A. All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences. Proceedings of the National Academy of Sciences of the United States of America. 112: 5413-8. PMID 25858953 DOI: 10.1073/Pnas.1419956112  0.716
2015 Sousa FG, Matuo R, Tang SW, Rajapakse VN, Luna A, Sander C, Varma S, Simon PH, Doroshow JH, Reinhold WC, Pommier Y. Alterations of DNA repair genes in the NCI-60 cell lines and their predictive value for anticancer drug activity. Dna Repair. 28: 107-15. PMID 25758781 DOI: 10.1016/J.Dnarep.2015.01.011  0.351
2015 Erson-Omay EZ, Ça?layan AO, Schultz N, Weinhold N, Omay SB, Özduman K, Köksal Y, Li J, Serin Harmanc? A, Clark V, Carrión-Grant G, Baranoski J, Ça?lar C, Barak T, Co?kun S, ... ... Sander C, et al. Somatic POLE mutations cause an ultramutated giant cell high-grade glioma subtype with better prognosis. Neuro-Oncology. PMID 25740784 DOI: 10.1093/Neuonc/Nov027  0.308
2015 Reznik E, Miller ML, Şenbabaoğlu Y, Riaz N, Sarungbam J, Tickoo SK, Al-Ahmadie HA, Lee W, Seshan VE, Hakimi AA, Sander C. Author response: Mitochondrial DNA copy number variation across human cancers Elife. DOI: 10.7554/Elife.10769.028  0.565
2015 Korkut A, Wang W, Demir E, Aksoy BA, Jing X, Molinelli EJ, Babur Ö, Bemis DL, Sumer SO, Solit DB, Pratilas CA, Sander C. Author response: Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells Elife. DOI: 10.7554/Elife.04640.031  0.735
2015 Ciriello G, Gatza ML, Hoadley KA, Zhang H, Rhie SK, Bowlby R, Wilkerson MD, Kandoth C, McLellan M, Cherniack A, Laird PW, Sander C, King TA, Perou CM. Abstract S2-04: Comprehensive molecular characterization of invasive lobular breast tumors Cancer Research. 75. DOI: 10.1158/1538-7445.Sabcs14-S2-04  0.338
2015 Creixell P, Reimand J, Haider S, Wu G, Shibata T, Vazquez M, Mustonen V, Gonzalez-Perez A, Pearson J, Sander C, Raphael BJ, Marks DS, Ouellette BFF, Valencia A, Bader GD, et al. Pathway and network analysis of cancer genomes Nature Methods. 12: 615-621. DOI: 10.1038/nmeth.3440  0.692
2015 Miller ML, Reznik E, Gauthier NP, Aksoy BA, Korkut A, Gao J, Ciriello G, Schultz N, Sander C. Pan-Cancer Analysis of Mutation Hotspots in Protein Domains Cell Systems. 1: 197-209. DOI: 10.1016/S0959-8049(16)61060-2  0.726
2014 Kaushik P, Molinelli EJ, Miller ML, Wang W, Korkut A, Liu W, Ju Z, Lu Y, Mills G, Sander C. Spatial normalization of reverse phase protein array data. Plos One. 9: e97213. PMID 25501559 DOI: 10.1371/Journal.Pone.0097213  0.615
2014 Weinhold N, Jacobsen A, Schultz N, Sander C, Lee W. Genome-wide analysis of noncoding regulatory mutations in cancer. Nature Genetics. 46: 1160-5. PMID 25261935 DOI: 10.1038/Ng.3101  0.369
2014 Hopf TA, Schärfe CP, Rodrigues JP, Green AG, Kohlbacher O, Sander C, Bonvin AM, Marks DS. Sequence co-evolution gives 3D contacts and structures of protein complexes. Elife. 3. PMID 25255213 DOI: 10.7554/Elife.03430  0.731
2014 Michel M, Hayat S, Skwark MJ, Sander C, Marks DS, Elofsson A. PconsFold: improved contact predictions improve protein models. Bioinformatics (Oxford, England). 30: i482-8. PMID 25161237 DOI: 10.1093/Bioinformatics/Btu458  0.7
2014 Babur Ö, Dogrusoz U, Çakır M, Aksoy BA, Schultz N, Sander C, Demir E. Integrating biological pathways and genomic profiles with ChiBE 2. Bmc Genomics. 15: 642. PMID 25086704 DOI: 10.1186/1471-2164-15-642  0.675
2014 Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, ... ... Sander C, et al. PredictProtein--an open resource for online prediction of protein structural and functional features. Nucleic Acids Research. 42: W337-43. PMID 24799431 DOI: 10.1093/Nar/Gku366  0.809
2014 Aksoy BA, Demir E, Babur Ö, Wang W, Jing X, Schultz N, Sander C. Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles. Bioinformatics (Oxford, England). 30: 2051-9. PMID 24665131 DOI: 10.1093/Bioinformatics/Btu164  0.685
2014 Gao J, Ciriello G, Sander C, Schultz N. Collection, integration and analysis of cancer genomic profiles: from data to insight. Current Opinion in Genetics & Development. 24: 92-8. PMID 24584084 DOI: 10.1016/J.Gde.2013.12.003  0.373
2014 Babur Ö, Aksoy BA, Rodchenkov I, Sümer SO, Sander C, Demir E. Pattern search in BioPAX models. Bioinformatics (Oxford, England). 30: 139-40. PMID 24045775 DOI: 10.1093/Bioinformatics/Btt539  0.662
2014 Hopf TA, Schärfe CPI, Rodrigues JPGLM, Green AG, Kohlbacher O, Sander C, Bonvin AMJJ, Marks DS. Author response: Sequence co-evolution gives 3D contacts and structures of protein complexes Elife. DOI: 10.7554/Elife.03430.032  0.591
2014 Gao J, Aksoy BA, Gross B, Dresdner G, Sun Y, Sumer SO, Sander C, Schultz N. Abstract 4271: The cBioPortal for Cancer Genomics as a clinical decision support tool Cancer Research. 74: 4271-4271. DOI: 10.1158/1538-7445.Am2014-4271  0.681
2013 Molinelli EJ, Korkut A, Wang W, Miller ML, Gauthier NP, Jing X, Kaushik P, He Q, Mills G, Solit DB, Pratilas CA, Weigt M, Braunstein A, Pagnani A, Zecchina R, ... Sander C, et al. Perturbation biology: inferring signaling networks in cellular systems. Plos Computational Biology. 9: e1003290. PMID 24367245 DOI: 10.1371/Journal.Pcbi.1003290  0.642
2013 Akrami R, Jacobsen A, Hoell J, Schultz N, Sander C, Larsson E. Comprehensive analysis of long non-coding RNAs in ovarian cancer reveals global patterns and targeted DNA amplification. Plos One. 8: e80306. PMID 24265805 DOI: 10.1371/Journal.Pone.0080306  0.352
2013 Brennan CW, Verhaak RG, McKenna A, Campos B, Noushmehr H, Salama SR, Zheng S, Chakravarty D, Sanborn JZ, Berman SH, Beroukhim R, Bernard B, Wu CJ, Genovese G, Shmulevich I, ... ... Sander C, et al. The somatic genomic landscape of glioblastoma. Cell. 155: 462-77. PMID 24120142 DOI: 10.1016/J.Cell.2013.09.034  0.371
2013 Ciriello G, Sinha R, Hoadley KA, Jacobsen AS, Reva B, Perou CM, Sander C, Schultz N. The molecular diversity of Luminal A breast tumors. Breast Cancer Research and Treatment. 141: 409-20. PMID 24096568 DOI: 10.1007/S10549-013-2699-3  0.322
2013 Jacobsen A, Silber J, Harinath G, Huse JT, Schultz N, Sander C. Analysis of microRNA-target interactions across diverse cancer types. Nature Structural & Molecular Biology. 20: 1325-32. PMID 24096364 DOI: 10.1038/Nsmb.2678  0.311
2013 Ciriello G, Miller ML, Aksoy BA, Senbabaoglu Y, Schultz N, Sander C. Emerging landscape of oncogenic signatures across human cancers. Nature Genetics. 45: 1127-33. PMID 24071851 DOI: 10.1038/Ng.2762  0.68
2013 Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer analysis project. Nature Genetics. 45: 1113-20. PMID 24071849 DOI: 10.1038/Ng.2764  0.347
2013 Demir E, Babur O, Rodchenkov I, Aksoy BA, Fukuda KI, Gross B, Sümer OS, Bader GD, Sander C. Using biological pathway data with paxtools. Plos Computational Biology. 9: e1003194. PMID 24068901 DOI: 10.1371/Journal.Pcbi.1003194  0.784
2013 Miller ML, Molinelli EJ, Nair JS, Sheikh T, Samy R, Jing X, He Q, Korkut A, Crago AM, Singer S, Schwartz GK, Sander C. Drug synergy screen and network modeling in dedifferentiated liposarcoma identifies CDK4 and IGF1R as synergistic drug targets. Science Signaling. 6: ra85. PMID 24065146 DOI: 10.1126/Scisignal.2004014  0.624
2013 Rodchenkov I, Demir E, Sander C, Bader GD. The BioPAX Validator. Bioinformatics (Oxford, England). 29: 2659-60. PMID 23918249 DOI: 10.1093/Bioinformatics/Btt452  0.493
2013 Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, Vazquez M, Fink JL, Kassahn KS, Pearson JV, Bader GD, Boutros PC, Muthuswamy L, Ouellette BF, Reimand J, ... ... Sander C, et al. Computational approaches to identify functional genetic variants in cancer genomes. Nature Methods. 10: 723-9. PMID 23900255 DOI: 10.1038/Nmeth.2562  0.628
2013 Iyer G, Al-Ahmadie H, Schultz N, Hanrahan AJ, Ostrovnaya I, Balar AV, Kim PH, Lin O, Weinhold N, Sander C, Zabor EC, Janakiraman M, Garcia-Grossman IR, Heguy A, Viale A, et al. Prevalence and co-occurrence of actionable genomic alterations in high-grade bladder cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 31: 3133-40. PMID 23897969 DOI: 10.1200/Jco.2012.46.5740  0.367
2013 Aksoy BA, Gao J, Dresdner G, Wang W, Root A, Jing X, Cerami E, Sander C. PiHelper: an open source framework for drug-target and antibody-target data. Bioinformatics (Oxford, England). 29: 2071-2. PMID 23766416 DOI: 10.1093/Bioinformatics/Btt345  0.666
2013 Ho AS, Kannan K, Roy DM, Morris LG, Ganly I, Katabi N, Ramaswami D, Walsh LA, Eng S, Huse JT, Zhang J, Dolgalev I, Huberman K, Heguy A, Viale A, ... ... Sander C, et al. The mutational landscape of adenoid cystic carcinoma. Nature Genetics. 45: 791-8. PMID 23685749 DOI: 10.1038/Ng.2643  0.31
2013 Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO, Sun Y, Jacobsen A, Sinha R, Larsson E, Cerami E, Sander C, Schultz N. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Science Signaling. 6: pl1. PMID 23550210 DOI: 10.1126/scisignal.2004088  0.676
2013 Ciriello G, Cerami E, Aksoy BA, Sander C, Schultz N. Using MEMo to discover mutual exclusivity modules in cancer. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.17. PMID 23504936 DOI: 10.1002/0471250953.Bi0817S41  0.701
2013 Mo Q, Wang S, Seshan VE, Olshen AB, Schultz N, Sander C, Powers RS, Ladanyi M, Shen R. Pattern discovery and cancer gene identification in integrated cancer genomic data. Proceedings of the National Academy of Sciences of the United States of America. 110: 4245-50. PMID 23431203 DOI: 10.1073/Pnas.1208949110  0.355
2013 John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. Potential miRNA Target Sites in the 3′ UTRs of Selected Genes Plos Biology. DOI: 10.1371/Journal.Pbio.0020363.G004  0.541
2013 Schultz N, Sander C. Abstract SY12-02: Computational cancer genomics: Biological discovery and translation. Cancer Research. 73. DOI: 10.1158/1538-7445.Am2013-Sy12-02  0.357
2013 Giovanni C, Perou CM, Sander C, Schultz N. Abstract 822: The molecular diversity of Luminal A breast cancer. Cancer Research. 73: 822-822. DOI: 10.1158/1538-7445.Am2013-822  0.338
2013 Korkut A, Wang W, Molinelli E, Miller M, Kaushik P, Aksoy A, Sander C. Abstract 5227: Quantitative network models of signaling and drug response in melanoma. Cancer Research. 73: 5227-5227. DOI: 10.1158/1538-7445.Am2013-5227  0.625
2013 Gao J, Sumer SO, Dresdner G, Aksoy BA, Sander C, Schultz N. Abstract 5140: Individual patient cancer profiles in the cBio Cancer Genomic Portal. Cancer Research. 73: 5140-5140. DOI: 10.1158/1538-7445.Am2013-5140  0.693
2013 Voss MH, Hakimi AA, Pham CG, Brannon AR, Chen Y, Cunha LF, Akin O, Liu H, Takeda S, Scott SN, Socci ND, Viale A, Schultz N, Sander C, Reuter VE, et al. Abstract 3515: Pathway convergent evolution underscores treatment response to MTOR inhibitors in kidney cancers. Cancer Research. 73: 3515-3515. DOI: 10.1158/1538-7445.Am2013-3515  0.352
2013 Korkut A, Wang W, Molinelli E, Miller M, Kaushik P, Aksoy A, Jing X, Gauthier N, Sander C. Abstract A24: Network models of signaling and drug response in melanoma. Molecular Cancer Therapeutics. 12. DOI: 10.1158/1535-7163.Targ-13-A24  0.34
2012 Marks DS, Hopf TA, Sander C. Protein structure prediction from sequence variation. Nature Biotechnology. 30: 1072-80. PMID 23138306 DOI: 10.1038/Nbt.2419  0.639
2012 Iyer G, Hanrahan AJ, Milowsky MI, Al-Ahmadie H, Scott SN, Janakiraman M, Pirun M, Sander C, Socci ND, Ostrovnaya I, Viale A, Heguy A, Peng L, Chan TA, Bochner B, et al. Genome sequencing identifies a basis for everolimus sensitivity. Science (New York, N.Y.). 338: 221. PMID 22923433 DOI: 10.1126/Science.1226344  0.357
2012 Cerami E, Gao J, Dogrusoz U, Gross BE, Sumer SO, Aksoy BA, Jacobsen A, Byrne CJ, Heuer ML, Larsson E, Antipin Y, Reva B, Goldberg AP, Sander C, Schultz N. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery. 2: 401-4. PMID 22588877 DOI: 10.1158/2159-8290.Cd-12-0095  0.686
2012 Hopf TA, Colwell LJ, Sheridan R, Rost B, Sander C, Marks DS. Three-dimensional structures of membrane proteins from genomic sequencing. Cell. 149: 1607-21. PMID 22579045 DOI: 10.1016/J.Cell.2012.04.012  0.771
2012 Shen R, Mo Q, Schultz N, Seshan VE, Olshen AB, Huse J, Ladanyi M, Sander C. Integrative subtype discovery in glioblastoma using iCluster. Plos One. 7: e35236. PMID 22539962 DOI: 10.1371/Journal.Pone.0035236  0.365
2012 Creighton CJ, Hernandez-Herrera A, Jacobsen A, Levine DA, Mankoo P, Schultz N, Du Y, Zhang Y, Larsson E, Sheridan R, Xiao W, Spellman PT, Getz G, Wheeler DA, Perou CM, ... ... Sander C, et al. Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma. Plos One. 7: e34546. PMID 22479643 DOI: 10.1371/Journal.Pone.0034546  0.3
2012 Hanrahan AJ, Schultz N, Westfal ML, Sakr RA, Giri DD, Scarperi S, Janakiraman M, Janikariman M, Olvera N, Stevens EV, She QB, Aghajanian C, King TA, Stanchina Ed, Spriggs DR, ... ... Sander C, et al. Genomic complexity and AKT dependence in serous ovarian cancer. Cancer Discovery. 2: 56-67. PMID 22328975 DOI: 10.1158/2159-8290.Cd-11-0170  0.312
2012 Ciriello G, Cerami E, Sander C, Schultz N. Mutual exclusivity analysis identifies oncogenic network modules. Genome Research. 22: 398-406. PMID 21908773 DOI: 10.1101/Gr.125567.111  0.378
2012 Iyer G, Milowsky MI, Al-Ahmadie H, Hanrahan A, Janakiraman M, Heguy A, Viale A, Socci ND, Sander C, Bochner B, Bajorin DF, Berger MF, Taylor BS, Solit DB. Defining the genetic basis of everolimus sensitivity in metastatic bladder cancer (MBC) by whole-genome sequencing (WGS). Journal of Clinical Oncology. 30: 4527-4527. DOI: 10.1200/Jco.2012.30.15_Suppl.4527  0.318
2012 Holm L, Sander C. Locating domains in three‐dimensional structures International Tables For Crystallography. DOI: 10.1107/97809553602060000891  0.337
2012 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, ... ... Sander C, et al. The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942)) Nature Biotechnology. 30: 365. DOI: 10.1038/Nbt0412-365C  0.473
2012 Morcos F, Pagnini A, Lunt B, Bertolino A, Marks D, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M. Estimation of Residue-Residue Coevolution using Direct Coupling Analysis Identifies Many Native Contacts Across a Large Number of Domain Families Biophysical Journal. 102: 250a. DOI: 10.1016/J.Bpj.2011.11.1378  0.615
2011 Taylor BS, DeCarolis PL, Angeles CV, Brenet F, Schultz N, Antonescu CR, Scandura JM, Sander C, Viale AJ, Socci ND, Singer S. Frequent alterations and epigenetic silencing of differentiation pathway genes in structurally rearranged liposarcomas. Cancer Discovery. 1: 587-97. PMID 22328974 DOI: 10.1158/2159-8290.Cd-11-0181  0.329
2011 Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C. Protein 3D structure computed from evolutionary sequence variation. Plos One. 6: e28766. PMID 22163331 DOI: 10.1371/Journal.Pone.0028766  0.739
2011 Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proceedings of the National Academy of Sciences of the United States of America. 108: E1293-301. PMID 22106262 DOI: 10.1073/Pnas.1111471108  0.734
2011 Mankoo PK, Shen R, Schultz N, Levine DA, Sander C. Time to recurrence and survival in serous ovarian tumors predicted from integrated genomic profiles. Plos One. 6: e24709. PMID 22073136 DOI: 10.1371/Journal.Pone.0024709  0.346
2011 Reva B, Antipin Y, Sander C. Predicting the functional impact of protein mutations: application to cancer genomics. Nucleic Acids Research. 39: e118. PMID 21727090 DOI: 10.1093/Nar/Gkr407  0.36
2011 Bott M, Brevet M, Taylor BS, Shimizu S, Ito T, Wang L, Creaney J, Lake RA, Zakowski MF, Reva B, Sander C, Delsite R, Powell S, Zhou Q, Shen R, et al. The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma. Nature Genetics. 43: 668-72. PMID 21642991 DOI: 10.1038/Ng.855  0.307
2011 Jörnsten R, Abenius T, Kling T, Schmidt L, Johansson E, Nordling TE, Nordlander B, Sander C, Gennemark P, Funa K, Nilsson B, Lindahl L, Nelander S. Network modeling of the transcriptional effects of copy number aberrations in glioblastoma. Molecular Systems Biology. 7: 486. PMID 21525872 DOI: 10.1038/Msb.2011.17  0.373
2011 Schultz N, Marenstein DR, De Angelis DA, Wang WQ, Nelander S, Jacobsen A, Marks DS, Massagué J, Sander C. Off-target effects dominate a large-scale RNAi screen for modulators of the TGF-β pathway and reveal microRNA regulation of TGFBR2. Silence. 2: 3. PMID 21401928 DOI: 10.1186/1758-907X-2-3  0.698
2011 Joosten RP, te Beek TA, Krieger E, Hekkelman ML, Hooft RW, Schneider R, Sander C, Vriend G. A series of PDB related databases for everyday needs. Nucleic Acids Research. 39: D411-9. PMID 21071423 DOI: 10.1093/Nar/Gkq1105  0.659
2011 Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C. Pathway Commons, a web resource for biological pathway data. Nucleic Acids Research. 39: D685-90. PMID 21071392 DOI: 10.1093/Nar/Gkq1039  0.752
2010 Larsson E, Sander C, Marks D. mRNA turnover rate limits siRNA and microRNA efficacy. Molecular Systems Biology. 6: 433. PMID 21081925 DOI: 10.1038/Msb.2010.89  0.687
2010 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, ... ... Sander C, et al. The BioPAX community standard for pathway data sharing. Nature Biotechnology. 28: 935-42. PMID 20829833 DOI: 10.1038/Nbt.1666  0.753
2010 Betel D, Koppal A, Agius P, Sander C, Leslie C. Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biology. 11: R90. PMID 20799968 DOI: 10.1186/Gb-2010-11-8-R90  0.329
2010 Barretina J, Taylor BS, Banerji S, Ramos AH, Lagos-Quintana M, Decarolis PL, Shah K, Socci ND, Weir BA, Ho A, Chiang DY, Reva B, Mermel CH, Getz G, Antipin Y, ... ... Sander C, et al. Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy. Nature Genetics. 42: 715-21. PMID 20601955 DOI: 10.1038/Ng.619  0.348
2010 Babur O, Demir E, Gönen M, Sander C, Dogrusoz U. Discovering modulators of gene expression. Nucleic Acids Research. 38: 5648-56. PMID 20466809 DOI: 10.1093/Nar/Gkq287  0.701
2010 Arvey A, Larsson E, Sander C, Leslie CS, Marks DS. Target mRNA abundance dilutes microRNA and siRNA activity. Molecular Systems Biology. 6: 363. PMID 20404830 DOI: 10.1038/Msb.2010.24  0.684
2010 Hudson TJ, Anderson W, Artez A, Barker AD, Bell C, Bernabé RR, Bhan MK, Calvo F, Eerola I, Gerhard DS, Guttmacher A, Guyer M, Hemsley FM, Jennings JL, ... ... Sander C, ... ... Sander C, et al. International network of cancer genome projects. Nature. 464: 993-8. PMID 20393554 DOI: 10.1038/Nature08987  0.616
2010 Cerami E, Demir E, Schultz N, Taylor BS, Sander C. Automated network analysis identifies core pathways in glioblastoma. Plos One. 5: e8918. PMID 20169195 DOI: 10.1371/Journal.Pone.0008918  0.39
2010 Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GS, Venugopal AK, Telikicherla D, Navarro JD, Mathivanan S, Pecquet C, Gollapudi SK, Tattikota SG, Mohan S, Padhukasahasram H, Subbannayya Y, ... ... Sander C, et al. NetPath: a public resource of curated signal transduction pathways. Genome Biology. 11: R3. PMID 20067622 DOI: 10.1186/Gb-2010-11-1-R3  0.493
2010 Babur O, Dogrusoz U, Demir E, Sander C. ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics (Oxford, England). 26: 429-31. PMID 20007251 DOI: 10.1093/Bioinformatics/Btp665  0.702
2010 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, ... ... Sander C, et al. Erratum: Corrigendum: The BioPAX community standard for pathway data sharing Nature Biotechnology. 28: 1308-1308. DOI: 10.1038/Nbt1210-1308C  0.47
2010 Larsson E, Sander C, Marks D. Erratum: mRNA Turnover Rate Limits siRNA and microRNA Efficacy Molecular Systems Biology. DOI: 10.1038/Msb.2010.113  0.512
2010 Zhao X, Schultz N, Taylor BS, Cerami E, Baumbusch LO, Haakensen VD, Lingjærde OC, Kristensen VN, Sander C, Børresen-Dale AL. 823 Pathway signatures in breast cancer progression − a genome-scale study based on integration of biology networks, DNA copy number, gene expression and mutations Ejc Supplements. 8: 207-208. DOI: 10.1016/S1359-6349(10)71619-0  0.321
2009 Chitale D, Gong Y, Taylor BS, Broderick S, Brennan C, Somwar R, Golas B, Wang L, Motoi N, Szoke J, Reinersman JM, Major J, Sander C, Seshan VE, Zakowski MF, et al. An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors. Oncogene. 28: 2773-83. PMID 19525976 DOI: 10.1038/Onc.2009.135  0.313
2009 Veeriah S, Brennan C, Meng S, Singh B, Fagin JA, Solit DB, Paty PB, Rohle D, Vivanco I, Chmielecki J, Pao W, Ladanyi M, Gerald WL, Liau L, Cloughesy TC, ... ... Sander C, et al. The tyrosine phosphatase PTPRD is a tumor suppressor that is frequently inactivated and mutated in glioblastoma and other human cancers. Proceedings of the National Academy of Sciences of the United States of America. 106: 9435-40. PMID 19478061 DOI: 10.1073/Pnas.0900571106  0.31
2009 Khan AA, Betel D, Miller ML, Sander C, Leslie CS, Marks DS. Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. Nature Biotechnology. 27: 549-55. PMID 19465925 DOI: 10.1038/Nbt.1543  0.679
2009 Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, ... ... Sander C, et al. Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). Molecular Oncology. 3: 9-17. PMID 19383362 DOI: 10.1016/J.Molonc.2008.11.003  0.334
2009 Khan AA, Betel D, Miller ML, Sander C, Leslie CS, Marks DS. Corrigendum: Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs Nature Biotechnology. 27: 671-671. DOI: 10.1038/Nbt0709-671A  0.527
2009 Levitt M, Sander C, Stern PS. The normal modes of a protein: Native bovine pancreatic trypsin inhibitor International Journal of Quantum Chemistry. 24: 181-199. DOI: 10.1002/Qua.560240721  0.434
2008 Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, ... ... Sander C, et al. Introducing meta-services for biomedical information extraction. Genome Biology. 9: S6. PMID 18834497 DOI: 10.1186/Gb-2008-9-S2-S6  0.485
2008 Tonikian R, Zhang Y, Sazinsky SL, Currell B, Yeh JH, Reva B, Held HA, Appleton BA, Evangelista M, Wu Y, Xin X, Chan AC, Seshagiri S, Lasky LA, Sander C, et al. A specificity map for the PDZ domain family. Plos Biology. 6: e239. PMID 18828675 DOI: 10.1371/Journal.Pbio.0060239  0.523
2008 Taylor BS, Barretina J, Socci ND, Decarolis P, Ladanyi M, Meyerson M, Singer S, Sander C. Functional copy-number alterations in cancer. Plos One. 3: e3179. PMID 18784837 DOI: 10.1371/Journal.Pone.0003179  0.334
2008 Nelander S, Wang W, Nilsson B, She Q, Pratilas C, Rosen N, Gennemark P, Sander C. Models from experiments: combinatorial drug perturbations of cancer cells Molecular Systems Biology. 4: 216-216. PMID 18766176 DOI: 10.1038/Msb.2008.53  0.337
2008 Aragues R, Sander C, Oliva B. Predicting cancer involvement of genes from heterogeneous data. Bmc Bioinformatics. 9: 172-172. PMID 18371197 DOI: 10.1186/1471-2105-9-172  0.34
2008 Rost B, Casadio R, Fariselli P, Sander C. Transmembrane helices predicted at 95% accuracy Protein Science. 4: 521-533. PMID 7795533 DOI: 10.1002/Pro.5560040318  0.54
2007 Betel D, Wilson M, Gabow AP, Marks DS, Sander C. The microRNA.org resource: targets and expression Nucleic Acids Research. 36: 149-153. PMID 18158296 DOI: 10.1093/Nar/Gkm995  0.707
2007 Reva B, Antipin Y, Sander C. Determinants of protein function revealed by combinatorial entropy optimization Genome Biology. 8: 1-15. PMID 17976239 DOI: 10.1186/Gb-2007-8-11-R232  0.346
2007 Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, ... ... Sander C, et al. Integration of biological networks and gene expression data using Cytoscape. Nature Protocols. 2: 2366-82. PMID 17947979 DOI: 10.1038/Nprot.2007.324  0.523
2007 Singer S, Socci ND, Ambrosini G, Sambol E, Decarolis P, Wu Y, O'Connor R, Maki R, Viale A, Sander C, Schwartz GK, Antonescu CR. Gene expression profiling of liposarcoma identifies distinct biological types/subtypes and potential therapeutic targets in well-differentiated and dedifferentiated liposarcoma. Cancer Research. 67: 6626-36. PMID 17638873 DOI: 10.1158/0008-5472.Can-07-0584  0.306
2007 Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, ... ... Sander C, et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell. 129: 1401-14. PMID 17604727 DOI: 10.1016/J.Cell.2007.04.040  0.314
2007 Mathew JP, Taylor BS, Bader GD, Pyarajan S, Antoniotti M, Chinnaiyan AM, Sander C, Burakoff SJ, Mishra B. From bytes to bedside: data integration and computational biology for translational cancer research. Plos Computational Biology. 3: e12. PMID 17319736 DOI: 10.1371/Journal.Pcbi.0030012  0.534
2007 Higgins ME, Claremont M, Major JE, Sander C, Lash AE. CancerGenes: a gene selection resource for cancer genome projects. Nucleic Acids Research. 35: D721-6. PMID 17088289 DOI: 10.1093/Nar/Gkl811  0.368
2006 Cerami EG, Bader GD, Gross BE, Sander C. cPath: open source software for collecting, storing, and querying biological pathways. Bmc Bioinformatics. 7: 497. PMID 17101041 DOI: 10.1186/1471-2105-7-497  0.533
2006 John B, Sander C, Marks DS. Prediction of human microRNA targets. Methods of Molecular Biology. 342: 101-113. PMID 16957370 DOI: 10.1385/1-59745-123-1:101  0.688
2006 Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, et al. A novel class of small RNAs bind to MILI protein in mouse testes. Nature. 442: 203-7. PMID 16751777 DOI: 10.1038/Nature04916  0.308
2006 Bader GD, Cary MP, Sander C. Pathguide: a pathway resource list. Nucleic Acids Research. 34: D504-6. PMID 16381921 DOI: 10.1093/Nar/Gkj126  0.555
2006 Orengo CA, Thornton JM, Holm L, Sander C. Protein folds and motifs: representation, comparison and classification International Tables For Crystallography. DOI: 10.1107/97809553602060000714  0.355
2005 Betel D, Sheridan RP, Marks DS, Sander C. Computational analysis of mouse piRNA sequence and biogenesis. Plos Computational Biology. 3. PMID 17997596 DOI: 10.1371/Journal.Pcbi.0030222  0.696
2005 Monticelli S, Ansel KM, Xiao C, Socci ND, Krichevsky AM, Thai TH, Rajewsky N, Marks DS, Sander C, Rajewsky K, Rao A, Kosik KS. MicroRNA profiling of the murine hematopoietic system. Genome Biology. 6: R71. PMID 16086853 DOI: 10.1186/Gb-2005-6-8-R71  0.674
2005 Leaman D, Chen PY, Fak J, Yalcin A, Pearce M, Unnerstall U, Marks DS, Sander C, Tuschl T, Gaul U. Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development. Cell. 121: 1097-108. PMID 15989958 DOI: 10.1016/J.Cell.2005.04.016  0.682
2005 Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T. The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes & Development. 19: 1288-93. PMID 15937218 DOI: 10.1101/Gad.1310605  0.674
2005 Cary MP, Bader GD, Sander C. Pathway information for systems biology. Febs Letters. 579: 1815-20. PMID 15763557 DOI: 10.1016/J.Febslet.2005.02.005  0.499
2005 John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. Correction: Human MicroRNA Targets Plos Biology. 3: e264. DOI: 10.1371/Journal.Pbio.0030264  0.567
2004 Chang J, Nicolas E, Marks D, Sander C, Lerro A, Buendia MA, Xu C, Mason WS, Moloshok T, Bort R, Zaret KS, Taylor JM. miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1. Rna Biology. 1: 106-13. PMID 17179747 DOI: 10.4161/Rna.1.2.1066  0.671
2004 John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. Human MicroRNA targets. Plos Biology. 2: e363. PMID 15502875 DOI: 10.1371/Journal.Pbio.0020363  0.698
2004 Pfeffer S, Zavolan M, Grässer FA, Chien M, Russo JJ, Ju J, John B, Enright AJ, Marks D, Sander C, Tuschl T. Identification of virus-encoded microRNAs. Science (New York, N.Y.). 304: 734-6. PMID 15118162 DOI: 10.1126/Science.1096781  0.671
2004 Tong AH, Lesage G, Bader GD, Ding H, Xu H, Xin X, Young J, Berriz GF, Brost RL, Chang M, Chen Y, Cheng X, Chua G, Friesen H, Goldberg DS, ... ... Sander C, et al. Global mapping of the yeast genetic interaction network. Science (New York, N.Y.). 303: 808-13. PMID 14764870 DOI: 10.1126/Science.1091317  0.632
2004 Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Sander C, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926  0.736
2003 Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS. MicroRNA targets in Drosophila. Genome Biology. 5: R1. PMID 14709173 DOI: 10.1186/Gb-2003-5-1-R1  0.58
2003 Berriz GF, King OD, Bryant B, Sander C, Roth FP. Characterizing gene sets with FuncAssociate. Bioinformatics (Oxford, England). 19: 2502-4. PMID 14668247 DOI: 10.1093/Bioinformatics/Btg363  0.538
2003 Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, ... ... Sander C, et al. Evaluation of annotation strategies using an entire genome sequence. Bioinformatics (Oxford, England). 19: 717-26. PMID 12691983 DOI: 10.1093/Bioinformatics/Btg077  0.51
2001 Vitkup D, Melamud E, Moult J, Sander C. Completeness in structural genomics Nature Structural Biology. 8: 559-565. PMID 11373627 DOI: 10.1038/88640  0.343
2001 Iliopoulos I, Tsoka S, Andrade MA, Janssen P, Audit B, Tramontano A, Valencia A, Leroy C, Sander C, Ouzounis CA. Genome sequences and great expectations. Genome Biology. 2: INTERACTIONS0001. PMID 11178275 DOI: 10.1186/Gb-2000-2-1-Interactions0001  0.53
2001 Rost B, Sander C. Third generation prediction of secondary structures. Methods in Molecular Biology (Clifton, N.J.). 143: 71-95. PMID 11084903 DOI: 10.1385/1-59259-368-2:71  0.493
2000 Promponas VJ, Enright AJ, Tsoka S, Kreil DP, Leroy C, Hamodrakas S, Sander C, Ouzounis CA. CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts. Bioinformatics (Oxford, England). 16: 915-22. PMID 11120681 DOI: 10.1093/Bioinformatics/16.10.915  0.307
2000 Hoersch S, Leroy C, Brown NP, Andrade MA, Sander C. The GeneQuiz Web server: Protein functional analysis through the Web Trends in Biochemical Sciences. 25: 33-35. PMID 10637611 DOI: 10.1016/S0968-0004(99)01510-8  0.351
1999 Andrade MA, Ouzounis C, Sander C, Tamames J, Valencia A. Functional classes in the three domains of life Journal of Molecular Evolution. 49: 551-557. PMID 10552036 DOI: 10.1007/Pl00006576  0.475
1999 Andrade MA, Brown NP, Leroy C, Hoersch S, De Daruvar A, Reich C, Franchini A, Tamames J, Valencia A, Ouzounis C, Sander C. Automated genome sequence analysis and annotation Bioinformatics. 15: 391-412. PMID 10366660 DOI: 10.1093/Bioinformatics/15.5.391  0.545
1999 Holm L, Sander C. Protein folds and families: sequence and structure alignments Nucleic Acids Research. 27: 244-247. PMID 9847191 DOI: 10.1093/Nar/27.1.244  0.379
1998 Holm L, Sander C. Dictionary of recurrent domains in protein structures. Proteins. 33: 88-96. PMID 9741847 DOI: 10.1002/(Sici)1097-0134(19981001)33:1<88::Aid-Prot8>3.0.Co;2-H  0.369
1998 Tamames J, Ouzounis C, Casari G, Sander C, Valencia A. EUCLID : Automatic classification of proteins in functional classes by their database annotations Bioinformatics. 14: 542-543. PMID 9694995 DOI: 10.1093/Bioinformatics/14.6.542  0.498
1998 Holm L, Sander C. Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics. 14: 423-429. PMID 9682055 DOI: 10.1093/Bioinformatics/14.5.423  0.341
1998 Brown NP, Leroy C, Sander C. MView: A web-compatible database search or multiple alignment viewer Bioinformatics. 14: 380-381. PMID 9632837 DOI: 10.1093/Bioinformatics/14.4.380  0.306
1998 Brown NP, Sander C, Bork P. Frame: detection of genomic sequencing errors. Bioinformatics (Oxford, England). 14: 367-71. PMID 9632832 DOI: 10.1093/Bioinformatics/14.4.367  0.509
1998 Andrade MA, Sander C, Valencia A. Updated catalogue of homologues to human disease-related proteins in the yeast genome Febs Letters. 426: 7-16. PMID 9598968 DOI: 10.1016/S0014-5793(98)00277-4  0.519
1998 Holm L, Sander C. Touring protein fold space with Dali/FSSP Nucleic Acids Research. 26: 316-319. PMID 9399863 DOI: 10.1093/Nar/26.1.316  0.371
1998 Dodge C, Schneider R, Sander C. The HSSP database of protein structure-sequence alignments and family profiles. Nucleic Acids Research. 26: 313-5. PMID 9399862 DOI: 10.1093/Nar/26.1.313  0.648
1997 Andrade MA, Sander C. Bioinformatics: From genome data to biological knowledge Current Opinion in Biotechnology. 8: 675-683. PMID 9425655 DOI: 10.1016/S0958-1669(97)80118-8  0.397
1997 Andrade MA, Daruvar A, Casari G, Schneider R, Termier M, Sander C. Characterization of new proteins found by analysis of short open reading frames from the full yeast genome. Yeast (Chichester, England). 13: 1363-74. PMID 9392081 DOI: 10.1002/(Sici)1097-0061(199711)13:14<1363::Aid-Yea182>3.0.Co;2-8  0.653
1997 Andrade M, Casari G, de Daruvar A, Sander C, Schneider R, Tamames J, Valencia A, Ouzounis C. Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Computer Applications in the Biosciences : Cabios. 13: 481-3. PMID 9283767 DOI: 10.1093/Bioinformatics/13.4.481  0.686
1997 Hooft RWW, Sander C, Vriend G. Objectively judging the quality of a protein structure from a Ramachandran plot Computer Applications in the Biosciences. 13: 425-430. PMID 9283757 DOI: 10.1093/Bioinformatics/13.4.425  0.305
1997 Andrade MA, Casari G, Sander C, Valencia A. Classification of protein families and detection of the determinant residues with an improved self-organizing map. Biological Cybernetics. 76: 441-50. PMID 9263431 DOI: 10.1007/S004220050357  0.48
1997 Rost B, Schneider R, Sander C. Protein fold recognition by prediction-based threading. Journal of Molecular Biology. 270: 471-80. PMID 9237912 DOI: 10.1006/Jmbi.1997.1101  0.703
1997 Voss H, Benes V, Andrade MA, Valencia A, Rechmann S, Teodoru C, Schwager C, Paces V, Sander C, Ansorge W. DNA sequencing and analysis of 130 kb from yeast chromosome XV. Yeast (Chichester, England). 13: 655-72. PMID 9200815 DOI: 10.1002/(Sici)1097-0061(19970615)13:7<655::Aid-Yea120>3.0.Co;2-I  0.525
1997 Holm L, Sander C. An evolutionary treasure: unification of a broad set of amidohydrolases related to urease Proteins. 28: 72-82. PMID 9144792 DOI: 10.1002/(Sici)1097-0134(199705)28:1<72::Aid-Prot7>3.0.Co;2-L  0.338
1997 Holm L, Sander C. Dali/FSSP classification of three-dimensional protein folds Nucleic Acids Research. 25: 231-234. PMID 9016542 DOI: 10.1093/Nar/25.1.231  0.385
1997 Schneider R, de Daruvar A, Sander C. The HSSP database of protein structure-sequence alignments. Nucleic Acids Research. 25: 226-30. PMID 9016541 DOI: 10.1093/Nar/25.1.226  0.646
1996 Hooft RWW, Sander C, Scharf M, Vriend G. The PDBFINDER database: A summary of PDB, DSSP and HSSP information with added value Computer Applications in the Biosciences. 12: 525-529. PMID 9021272 DOI: 10.1093/Bioinformatics/12.6.525  0.371
1996 Ouzounis C, Casari G, Sander C, Tamames J, Valencia A. Computational comparisons of model genomes Trends in Biotechnology. 14: 280-285. PMID 8987458 DOI: 10.1016/0167-7799(96)10043-3  0.509
1996 Thomas DJ, Casari G, Sander C. The Prediction Of Protein Contacts From Multiple Sequence Alignments Protein Engineering. 9: 941-948. PMID 8961347 DOI: 10.1093/Protein/9.11.941  0.351
1996 Eide LG, Sander C, Prydz H. Sequencing and analysis of a 35·4 kb region on the left arm of chromosome IV from Saccharomyces cerevisiae reveal 23 open reading frames Yeast. 12: 1085-1090. PMID 8896275 DOI: 10.1002/(Sici)1097-0061(199609)12:10B<1085::Aid-Yea9>3.0.Co;2-0  0.354
1996 Rost B, Sander C. Bridging the Protein Sequence-Structure Gap by Structure Predictions Annual Review of Biophysics and Biomolecular Structure. 25: 113-136. PMID 8800466 DOI: 10.1146/Annurev.Bb.25.060196.000553  0.564
1996 Ouzounis C, Casari G, Valencia A, Sander C. Novelties from the complete genome of Mycoplasma genitalium [3] Molecular Microbiology. 20: 898-900. PMID 8793887 DOI: 10.1111/J.1365-2958.1996.Tb02529.X  0.46
1996 Casari G, De Daruvar A, Sander C, Schneider R. Bioinformatics and the discovery of gene function. Trends in Genetics : Tig. 12: 244-5. PMID 8763493 DOI: 10.1016/0168-9525(96)30057-7  0.587
1996 Holm L, Sander C. Alignment of three-dimensional protein structures: network server for database searching. Methods in Enzymology. 266: 653-662. PMID 8743712 DOI: 10.1016/S0076-6879(96)66041-8  0.365
1996 Tamames J, Ouzounis C, Sander C, Valencia A. Genomes with distinct function composition Febs Letters. 389: 96-101. PMID 8682215 DOI: 10.1016/0014-5793(96)00527-3  0.532
1996 Holm L, Sander C. Mapping the Protein Universe Science. 273: 595-602. PMID 8662544 DOI: 10.1126/Science.273.5275.595  0.376
1996 Holm L, Sander C. The FSSP database: fold classification based on structure-structure alignment of proteins. Nucleic Acids Research. 24: 206-209. PMID 8594580 DOI: 10.1093/Nar/24.1.206  0.364
1996 Schneider R, Sander C. The HSSP database of protein structure-sequence alignments. Nucleic Acids Research. 24: 201-5. PMID 8594579 DOI: 10.1093/nar/24.1.201  0.611
1996 Hooft RWW, Sander C, Vriend G. Verification of protein structures : Side-chain planarity Journal of Applied Crystallography. 29: 714-716. DOI: 10.1107/S0021889896008631  0.31
1995 Rost B, Sander C. Progress of 1D protein structure prediction at last. Proteins. 23: 295-300. PMID 8710823 DOI: 10.1002/Prot.340230304  0.557
1995 Holm L, Sander C. Dali: a network tool for protein structure comparison Trends in Biochemical Sciences. 20: 478-480. PMID 8578593 DOI: 10.1016/S0968-0004(00)89105-7  0.319
1995 Ouzounis C, Bork P, Casari G, Sander C. New protein functions in yeast chromosome VIII. Protein Science : a Publication of the Protein Society. 4: 2424-8. PMID 8563640 DOI: 10.1002/Pro.5560041121  0.508
1995 Ouzounis C, Kyrpides N, Sander C. Novel protein families in archaean genomes Nucleic Acids Research. 23: 565-570. PMID 7899076 DOI: 10.1093/Nar/23.4.565  0.39
1995 Voss H, Tamames J, Teodoru C, Valencia A, Sensen C, Wiemann S, Schwager C, Zimmermann J, Sander C, Ansorge W. Nucleotide sequence and analysis of the centromeric region of yeast chromosome IX. Yeast (Chichester, England). 11: 61-78. PMID 7762303 DOI: 10.1002/Yea.320110109  0.507
1995 Casari G, Sander C, Valencia A. A method to predict functional residues in proteins Nature Structural Biology. 2: 171-178. PMID 7749921 DOI: 10.1038/Nsb0295-171  0.523
1995 Casari G, Andrade MA, Bork P, Boyle J, Daruvar A, Ouzounis C, Schneider R, Tamames J, Valencia A, Sander C. Challenging times for bioinformatics. Nature. 376: 647-8. PMID 7651513 DOI: 10.1038/376647A0  0.672
1995 Hobohm U, Sander C. A Sequence Property Approach to Searching Protein Databases Journal of Molecular Biology. 251: 390-399. PMID 7650738 DOI: 10.1006/Jmbi.1995.0442  0.365
1995 Konstantopoulou I, Ouzounis CA, Drosopoulou E, Yiangou M, Sideras P, Sander C, Scouras ZG. A Drosophila hsp70 gene contains long, antiparallel, coupled open reading frames (LAC ORFs) conserved in homologous loci Journal of Molecular Evolution. 41: 414-420. PMID 7563128 DOI: 10.1007/Bf00160312  0.309
1995 Bork P, Holm L, Koonin EV, Sander C. The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction. Proteins. 22: 259-66. PMID 7479698 DOI: 10.1002/Prot.340220306  0.486
1995 Bork P, Ouzounis C, Casari G, Schneider R, Sander C, Dolan M, Gilbert W, Gillevet PM. Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology. Molecular Microbiology. 16: 955-67. PMID 7476192 DOI: 10.1111/J.1365-2958.1995.Tb02321.X  0.683
1994 Koonin EV, Bork P, Sander C. Yeast chromosome III: new gene functions. The Embo Journal. 13: 493-503. PMID 8313894 DOI: 10.1002/J.1460-2075.1994.Tb06287.X  0.548
1994 Meitinger T, Meindl A, Bork P, Rost B, Sander C, Haasemann M, Murken J. Molecular modelling of the Norrie disease protein predicts a cystine knot growth factor tertiary structure. Nature Genetics. 5: 376-80. PMID 8298646 DOI: 10.1038/Ng1293-376  0.49
1994 Rost B, Sander C, Schneider R. Redefining the goals of protein secondary structure prediction. Journal of Molecular Biology. 235: 13-26. PMID 8289237 DOI: 10.1016/S0022-2836(05)80007-5  0.701
1994 Göbel U, Sander C, Schneider R, Valencia A. Correlated mutations and residue contacts in proteins. Proteins. 18: 309-17. PMID 8208723 DOI: 10.1002/Prot.340180402  0.7
1994 Rost B, Sander C, Schneider R. PHD--an automatic mail server for protein secondary structure prediction. Computer Applications in the Biosciences : Cabios. 10: 53-60. PMID 8193956 DOI: 10.1093/Bioinformatics/10.1.53  0.721
1994 Shindyalov IN, Kolchanov NA, Sander C. Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations? Protein Engineering. 7: 349-358. PMID 8177884 DOI: 10.1093/Protein/7.3.349  0.385
1994 Vriend G, Sander C, Stouten PFW. A novel search method for protein sequence-structure relations using property profiles Protein Engineering. 7: 23-29. PMID 8140091 DOI: 10.1093/Protein/7.1.23  0.378
1994 Rost B, Sander C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins. 19: 55-72. PMID 8066087 DOI: 10.1002/Prot.340190108  0.558
1994 Ouzounis C, Bork P, Sander C. The modular structure of NifU proteins. Trends in Biochemical Sciences. 19: 199-200. PMID 8048161 DOI: 10.1016/0968-0004(94)90021-3  0.483
1994 Hobohm U, Sander C. Enlarged representative set of protein structures Protein Science. 3: 522-524. PMID 8019422 DOI: 10.1002/Pro.5560030317  0.335
1994 Holm L, Sander C. Parser for protein folding units. Proteins. 19: 256-268. PMID 7937738 DOI: 10.1002/Prot.340190309  0.313
1994 Holm L, Sander C. Searching protein structure databases has come of age. Proteins. 19: 165-173. PMID 7937731 DOI: 10.1002/Prot.340190302  0.364
1994 Sander C, Schneider R. The HSSP database of protein structure-sequence alignments. Nucleic Acids Research. 22: 3597-9. PMID 7937066  0.608
1994 Bork P, Holm L, Sander C. The immunoglobulin fold. Structural classification, sequence patterns and common core. Journal of Molecular Biology. 242: 309-20. PMID 7932691 DOI: 10.1006/Jmbi.1994.1582  0.479
1994 Rost B, Sander C. Conservation and prediction of solvent accessibility in protein families Proteins. 20: 216-226. PMID 7892171 DOI: 10.1002/Prot.340200303  0.54
1994 Hobohm U, Houthaeve T, Sander C. Amino Acid Analysis and Protein Database Compositional Search as a Rapid and Inexpensive Method to Identify Proteins Analytical Biochemistry. 222: 202-209. PMID 7856850 DOI: 10.1006/Abio.1994.1474  0.333
1994 Rost B, Sander C. Structure prediction of proteins--where are we now? Current Opinion in Biotechnology. 5: 372-380. PMID 7765169 DOI: 10.1016/0958-1669(94)90045-0  0.539
1994 Sander C. Design of protein structures: Helix bundles and beyond Trends in Biotechnology. 12: 163-167. PMID 7764898 DOI: 10.1016/0167-7799(94)90077-9  0.324
1994 Holm L, Sander C, Rüterjans H, Schnarr M, Fogh R, Boelens R, Kaptein R. LexA repressor and iron uptake regulator from Escherichia coli: new members of the CAP-like DNA binding domain superfamily. Protein Engineering. 7: 1449-53. PMID 7716155 DOI: 10.1093/Protein/7.12.1449  0.369
1994 Scharf M, Schneider R, Casari G, Bork P, Valencia A, Ouzounis C, Sander C. GeneQuiz: a workbench for sequence analysis. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 2: 348-53. PMID 7584411  0.669
1994 Koonin EV, Bork P, Sander C. A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme? Nucleic Acids Research. 22: 2166-7. PMID 7518079 DOI: 10.1093/Nar/22.11.2166  0.501
1994 Hooft RWW, Sander C, Vriend G. Reconstruction of Symmetry-Related Molecules from Protein Data Bank (PDB) Files Journal of Applied Crystallography. 27: 1006-1009. DOI: 10.1107/S0021889894007764  0.334
1994 Bork P, Ouzounis C, Sander C. From genome sequences to protein function Current Opinion in Structural Biology. 4: 393-403. DOI: 10.1016/S0959-440X(94)90109-0  0.529
1993 Holmes KC, Sander C, Valencia A. A new ATP-binding fold in actin, hexokinase and Hsc70. Trends in Cell Biology. 3: 53-9. PMID 14731729 DOI: 10.1016/0962-8924(93)90161-S  0.762
1993 Rost B, Schneider R, Sander C. Progress in protein structure prediction? Trends in Biochemical Sciences. 18: 120-3. PMID 8493721 DOI: 10.1016/0968-0004(93)90017-H  0.707
1993 Ouzounis C, Sander C. Homology of the NifS family of proteins to a new class of pyridoxal phosphate-dependent enzymes Febs Letters. 322: 159-164. PMID 8482384 DOI: 10.1016/0014-5793(93)81559-I  0.309
1993 Stouten PFW, Sander C, Wittinghofer A, Valencia A. How Does The Switch-Ii Region Of G-Domains Work Febs Letters. 320: 1-6. PMID 8462668 DOI: 10.1016/0014-5793(93)81644-F  0.453
1993 Holm L, Sander C. Structural alignment of globins, phycocyanins and colicin A. Febs Letters. 315: 301-306. PMID 8422921 DOI: 10.1016/0014-5793(93)81183-Z  0.348
1993 Bork P, Sander C, Valencia A. Convergent evolution of similar enzymatic function on different protein folds: The hexokinase, ribokinase, and galactokinase families of sugar kinases Protein Science. 2: 31-40. PMID 8382990 DOI: 10.1002/Pro.5560020104  0.561
1993 Holm L, Sander C. Protein structure comparison by alignment of distance matrices. Journal of Molecular Biology. 233: 123-138. PMID 8377180 DOI: 10.1006/Jmbi.1993.1489  0.353
1993 Rost B, Sander C. Improved prediction of protein secondary structure by use of sequence profiles and neural networks Proceedings of the National Academy of Sciences of the United States of America. 90: 7558-7562. PMID 8356056 DOI: 10.1073/Pnas.90.16.7558  0.558
1993 Ouzounis C, Sander C, Scharf M, Schneider R. Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures. Journal of Molecular Biology. 232: 805-25. PMID 8355272 DOI: 10.1006/Jmbi.1993.1433  0.655
1993 Rost B, Sander C. Prediction of Protein Secondary Structure at Better than 70% Accuracy Journal of Molecular Biology. 232: 584-599. PMID 8345525 DOI: 10.1006/Jmbi.1993.1413  0.555
1993 Sander C, Schneider R. The HSSP data base of protein structure-sequence alignments. Nucleic Acids Research. 21: 3105-9. PMID 8332531  0.612
1993 Rost B, sander C. Secondary structure prediction of all-helical proteins in two states. Protein Engineering. 6: 831-836. PMID 8309930 DOI: 10.1093/Protein/6.8.831  0.518
1993 Hobohm U, Sander C. Does the HIV Nef protein mimic the MHC Febs Letters. 333: 211-213. PMID 8224180 DOI: 10.1016/0014-5793(93)80655-E  0.335
1993 Reizer J, Reizer A, Saier MH, Bork P, Sander C. Exopolyphosphate phosphatase and guanosine pentaphosphate phosphatase belong to the sugar kinase/actin/hsp 70 superfamily. Trends in Biochemical Sciences. 18: 247-8. PMID 8212131 DOI: 10.1016/0968-0004(93)90172-J  0.386
1993 Bork P, Sander C. A hybrid protein kinase-RNase in an interferon-induced pathway? Febs Letters. 334: 149-52. PMID 7693513 DOI: 10.1016/0014-5793(93)81701-Z  0.489
1993 Rost B, Sander C. Jury returns on structure prediction. Nature. 360: 540. PMID 1281284 DOI: 10.1038/360540B0  0.486
1992 Palme K, Diefenthal T, Vingron M, Sander C, Schell J. Molecular cloning and structural analysis of genes from Zea mays (L.) coding for members of the ras-related ypt gene family. Proceedings of the National Academy of Sciences of the United States of America. 89: 787-791. PMID 1731354 DOI: 10.1073/Pnas.89.2.787  0.317
1992 Vriend G, Sander C. Detection of common three-dimensional substructures in proteins. Proteins. 11: 52-8. PMID 1660134 DOI: 10.1002/Prot.340110107  0.323
1992 Bork P, Ouzounis C, Sander C, Scharf M, Schneider R, Sonnhammer E. What's in a genome? Nature. 358: 287. PMID 1641000 DOI: 10.1038/358287A0  0.646
1992 Holm L, Sander C. Evaluation of protein models by atomic solvation preference Journal of Molecular Biology. 225: 93-105. PMID 1583696 DOI: 10.1016/0022-2836(92)91028-N  0.357
1992 Holm L, Sander C. Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology. Proteins. 14: 213-223. PMID 1409569 DOI: 10.1002/Prot.340140208  0.316
1992 Bork P, Sander C, Valencia A. An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins Proceedings of the National Academy of Sciences of the United States of America. 89: 7290-7294. PMID 1323828 DOI: 10.1073/Pnas.89.16.7290  0.612
1992 Bork P, Sander C. A large domain common to sperm receptors (Zp2 and Zp3) and TGF-beta type III receptor. Febs Letters. 300: 237-40. PMID 1313375 DOI: 10.1016/0014-5793(92)80853-9  0.44
1992 Holm L, Ouzounis C, Sander C, Tuparev G, Vriend G. A database of protein structure families with common folding motifs Protein Science. 1: 1691-1698. PMID 1304898 DOI: 10.1002/Pro.5560011217  0.376
1992 Bork P, Ouzounis C, Sander C, Scharf M, Schneider R, Sonnhammer E. Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III. Protein Science : a Publication of the Protein Society. 1: 1677-90. PMID 1304897 DOI: 10.1002/Pro.5560011216  0.707
1992 Hobohm U, Scharf M, Schneider R, Sander C. Selection of representative protein data sets. Protein Science : a Publication of the Protein Society. 1: 409-17. PMID 1304348 DOI: 10.1002/Pro.5560010313  0.641
1992 Rost B, Sander C. EXERCISING MULTI-LAYERED NETWORKS ON PROTEIN SECONDARY STRUCTURE International Journal of Neural Systems. 3: 209-220. DOI: 10.1142/S0129065792000541  0.505
1991 Valencia A, Kjeldgaard M, Pai EF, Sander C. GTPase domains of ras p21 oncogene protein and elongation factor Tu: analysis of three-dimensional structures, sequence families, and functional sites. Proceedings of the National Academy of Sciences of the United States of America. 88: 5443-7. PMID 2052624 DOI: 10.1073/Pnas.88.12.5443  0.497
1991 Grandori R, Sander C. Identification by computer sequence analysis of transcriptional regulator proteins in Dictyostelium discoideum and Serratia marcescens. Nucleic Acids Research. 19: 2359-62. PMID 2041776 DOI: 10.1093/Nar/19.9.2359  0.405
1991 Valencia A, Chardin P, Wittinghofer A, Sander C. The ras protein family: Evolutionary tree and role of conserved amino acids Biochemistry. 30: 4637-4648. PMID 2029511 DOI: 10.1021/Bi00233A001  0.447
1991 Sander C, Schneider R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins. 9: 56-68. PMID 2017436 DOI: 10.1002/Prot.340090107  0.65
1991 Holm L, Sander C. Database algorithm for generating protein backbone and side-chain co-ordinates from a Cα trace: Application to model building and detection of co-ordinate errors Journal of Molecular Biology. 218: 183-194. PMID 2002501 DOI: 10.1016/0022-2836(91)90883-8  0.323
1991 Ouzounis C, Sander C. A structure-derived sequence pattern for the detection of type I copper binding domains in distantly related proteins Febs Letters. 279: 73-78. PMID 1995346 DOI: 10.1016/0014-5793(91)80254-Z  0.343
1991 Hubbard TJP, Sander C. The role of heat-shock and chaperone proteins in protein folding: possible molecular mechanisms. Protein Engineering. 4: 711-717. PMID 1798696 DOI: 10.1093/Protein/4.7.711  0.306
1991 Sander C. De novo design of proteins Current Opinion in Structural Biology. 1: 630-637. DOI: 10.1016/S0959-440X(05)80088-0  0.303
1989 Godzik A, Sander C. Conservation of residue interactions in a family of Ca-binding proteins Protein Engineering. 2: 589-596. PMID 2813336 DOI: 10.1093/Protein/2.8.589  0.343
1989 Frömmel C, Sander C. Thermitase, a thermostable subtilisin: Comparison of predicted and experimental structures and the molecular cause of thermostability Proteins. 5: 22-37. PMID 2664764 DOI: 10.1002/Prot.340050105  0.341
1989 Bussian BM, Sander C. How to determine protein secondary structure in solution by Raman spectroscopy: practical guide and test case DNase I Biochemistry. 28: 4271-4277. DOI: 10.1021/Bi00436A023  0.339
1985 Levitt M, Sander C, Stern PS. Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme. Journal of Molecular Biology. 181: 423-447. PMID 2580101 DOI: 10.1016/0022-2836(85)90230-X  0.43
1985 Levitt M, Sander C, Stern PS. Jaws. A film of enzyme dynamics Fresenius' Zeitschrift FüR Analytische Chemie. 321: 645-645. DOI: 10.1007/Bf00489623  0.422
1984 Kabsch W, Sander C. On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations Proceedings of the National Academy of Sciences of the United States of America. 81: 1075-1078. PMID 6422466 DOI: 10.1073/Pnas.81.4.1075  0.398
1983 Kabsch W, Sander C. How good are predictions of protein secondary structure Febs Letters. 155: 179-182. PMID 6852232 DOI: 10.1016/0014-5793(82)80597-8  0.355
1983 Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers. 22: 2577-2637. PMID 6667333 DOI: 10.1002/Bip.360221211  0.311
1983 Gallwitz D, Donath C, Sander C. A yeast gene encoding a protein homologous to the human c-has/bas proto-oncogene product Nature. 306: 704-707. PMID 6318115 DOI: 10.1038/306704A0  0.345
1982 Hol WG, Halie LM, Sander C. Dipoles of the alpha-helix and beta-sheet: their role in protein folding. Nature. 294: 532-6. PMID 7312043 DOI: 10.1038/294532A0  0.302
1980 Lifson S, Sander C. Specific recognition in the tertiary structure of beta-sheets of proteins. Journal of Molecular Biology. 139: 627-39. PMID 7411635 DOI: 10.1016/0022-2836(80)90052-2  0.579
1980 Sander C, Schulz GE. Degeneracy of the information contained in amino acid sequences: evidence from overlaid genes. Journal of Molecular Evolution. 13: 245-52. PMID 228047 DOI: 10.1007/Bf01739483  0.314
1979 Lifson S, Sander C. Antiparallel and parallel beta-strands differ in amino acid residue preferences. Nature. 282: 109-11. PMID 503185 DOI: 10.1038/282109A0  0.596
Low-probability matches (unlikely to be authored by this person)
2010 Brill E, Gobble R, Angeles C, Lagos-Quintana M, Crago A, Laxa B, Decarolis P, Zhang L, Antonescu C, Socci ND, Taylor BS, Sander C, Koff A, Singer S. ZIC1 overexpression is oncogenic in liposarcoma. Cancer Research. 70: 6891-901. PMID 20713527 DOI: 10.1158/0008-5472.Can-10-0745  0.3
1992 Janknecht R, Sander C, Pongs O. (HX)n repeats: a pH-controlled protein-protein interaction motif of eukaryotic transcription factors? Febs Letters. 295: 1-2. PMID 1765137 DOI: 10.1016/0014-5793(91)81369-J  0.3
2010 Taylor BS, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver BS, Arora VK, Kaushik P, Cerami E, Reva B, Antipin Y, Mitsiades N, Landers T, Dolgalev I, Major JE, ... ... Sander C, et al. Integrative genomic profiling of human prostate cancer. Cancer Cell. 18: 11-22. PMID 20579941 DOI: 10.1016/J.Ccr.2010.05.026  0.299
2016 Okada T, Lee AY, Qin LX, Agaram N, Mimae T, Shen Y, O'Connor R, López-Lago MA, Craig A, Miller ML, Agius P, Molinelli E, Socci ND, Crago AM, Shima F, ... Sander C, et al. Integrin-α10 dependency identifies RAC and RICTOR as therapeutic targets in high-grade myxofibrosarcoma. Cancer Discovery. PMID 27577794 DOI: 10.1158/2159-8290.Cd-15-1481  0.299
1992 Sander C, Vriend G, Bazan F, Horovitz A, Nakamura H, Ribas L, Finkelstein AV, Lockhart A, Merkl R, Perry LJ. Protein design on computers. Five new proteins: Shpilka, Grendel, Fingerclasp, Leather, and Aida. Proteins. 12: 105-10. PMID 1603799 DOI: 10.1002/Prot.340120203  0.298
2011 Hoell JI, Larsson E, Runge S, Nusbaum JD, Duggimpudi S, Farazi TA, Hafner M, Borkhardt A, Sander C, Tuschl T. RNA targets of wild-type and mutant FET family proteins. Nature Structural & Molecular Biology. 18: 1428-31. PMID 22081015 DOI: 10.1038/Nsmb.2163  0.297
1985 Brown RS, Sander C, Argos P. The primary structure of transcription factor TFIIIA has 12 consecutive repeats Febs Letters. 186: 271-274. PMID 4007166 DOI: 10.1016/0014-5793(85)80723-7  0.297
2011 Chen M, Pratt CP, Zeeman ME, Schultz N, Taylor BS, O'Neill A, Castillo-Martin M, Nowak DG, Naguib A, Grace DM, Murn J, Sander C, Gerald WL, Cordon-Cardo C, Newton AC, et al. Abstract 2405: Identification of PHLPP as a tumour suppressor reveals the role of pathway feedback compensation in PTEN-mutant prostate cancer progression Cancer Research. 71: 2405-2405. DOI: 10.1158/1538-7445.Am2011-2405  0.296
2018 Kahles A, Lehmann KV, Toussaint NC, Hüser M, Stark SG, Sachsenberg T, Stegle O, Kohlbacher O, Sander C, Rätsch G. Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients. Cancer Cell. PMID 30078747 DOI: 10.1016/J.Ccell.2018.07.001  0.295
2015 Rizvi NA, Hellmann MD, Snyder A, Kvistborg P, Makarov V, Havel JJ, Lee W, Yuan J, Wong P, Ho TS, Miller ML, Rekhtman N, Moreira AL, Ibrahim F, Bruggeman C, ... ... Sander C, et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science (New York, N.Y.). 348: 124-8. PMID 25765070 DOI: 10.1126/Science.Aaa1348  0.295
1996 Gray PM, Kemp GJ, Rawlings CJ, Brown NP, Sander C, Thornton JM, Orengo CM, Wodak SJ, Richelle J. Macromolecular structure information and databases. The EU BRIDGE Database Project Consortium. Trends in Biochemical Sciences. 21: 251-6. PMID 8755246 DOI: 10.1016/0968-0004(96)10037-2  0.293
2012 Silber J, Jacobsen A, Ozawa T, Harinath G, Pedraza A, Sander C, Holland EC, Huse JT. miR-34a repression in proneural malignant gliomas upregulates expression of its target PDGFRA and promotes tumorigenesis. Plos One. 7: e33844. PMID 22479456 DOI: 10.1371/Journal.Pone.0033844  0.292
2013 Hakimi AA, Ostrovnaya I, Reva B, Schultz N, Chen YB, Gonen M, Liu H, Takeda S, Voss MH, Tickoo SK, Reuter VE, Russo P, Cheng EH, Sander C, Motzer RJ, et al. Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 19: 3259-67. PMID 23620406 DOI: 10.1158/1078-0432.Ccr-12-3886  0.292
1995 Cronet P, Bellsolell L, Sander C, Coll M, Serrano L. Investigating the structural determinants of the p21-like triphosphate and Mg2+ binding site. Journal of Molecular Biology. 249: 654-64. PMID 7783218 DOI: 10.1006/Jmbi.1995.0326  0.292
2011 Lipchina I, Elkabetz Y, Hafner M, Sheridan R, Mihailovic A, Tuschl T, Sander C, Studer L, Betel D. Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response. Genes & Development. 25: 2173-86. PMID 22012620 DOI: 10.1101/Gad.17221311  0.291
1994 Holm L, Sander C. Structural similarity of plant chitinase and lysozymes from animals and phage: An evolutionary connection Febs Letters. 340: 129-132. PMID 8119396 DOI: 10.1016/0014-5793(94)80187-8  0.291
2012 Silber J, Jacobsen A, Ozawa T, Harinath G, Holland EC, Sander C, Huse JT. Abstract B15: Repression of PDGFRA-targeting miR-34a promotes tumorigenesis in proneural malignant gliomas Cancer Research. 72. DOI: 10.1158/1538-7445.Nonrna12-B15  0.29
2013 Donehower LA, Creighton CJ, Schultz N, Shinbrot E, Chang K, Gunaratne PH, Muzny D, Sander C, Hamilton SR, Gibbs RA, Wheeler D. MLH1-silenced and non-silenced subgroups of hypermutated colorectal carcinomas have distinct mutational landscapes. The Journal of Pathology. 229: 99-110. PMID 22899370 DOI: 10.1002/Path.4087  0.289
2014 Oricchio E, Ciriello G, Jiang M, Boice MH, Schatz JH, Heguy A, Viale A, de Stanchina E, Teruya-Feldstein J, Bouska A, McKeithan T, Sander C, Tam W, Seshan VE, Chan WC, et al. Frequent disruption of the RB pathway in indolent follicular lymphoma suggests a new combination therapy. The Journal of Experimental Medicine. 211: 1379-91. PMID 24913233 DOI: 10.1084/Jem.20132120  0.289
2010 Veeriah S, Taylor BS, Meng S, Fang F, Yilmaz E, Vivanco I, Janakiraman M, Schultz N, Hanrahan AJ, Pao W, Ladanyi M, Sander C, Heguy A, Holland EC, Paty PB, et al. Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies. Nature Genetics. 42: 77-82. PMID 19946270 DOI: 10.1038/Ng.491  0.287
2015 Kaffenberger S, Ciriello G, Winer A, Voss M, Maranchie J, Tamboli P, Rathmell K, Choueiri T, Motzer R, Coleman J, Russo P, Sander C, Hsieh J, Hakimi A. MP35-01 PROTEOMIC STRATIFICATION OF CLEAR CELL RENAL CELL CARCINOMA UTILIZING THE CANCER GENOME ATLAS (TCGA) WITH EXTERNAL VALIDATION Journal of Urology. 193. DOI: 10.1016/J.Juro.2015.02.1102  0.287
2013 Domcke S, Sinha R, Levine DA, Sander C, Schultz N. Evaluating cell lines as tumour models by comparison of genomic profiles. Nature Communications. 4: 2126. PMID 23839242 DOI: 10.1038/Ncomms3126  0.287
2015 Erson-Omay EZ, Schultz N, Omay SB, Ozduman K, Harmanci AS, Clark V, Baranoski J, Gunel JM, Pamir MN, Bilguvar K, Yasuno K, Vortmeyer A, Huttner AJ, Sander C, Gunel M. GENO-15IDENTIFICATION AND GENOMIC ANALYSIS OF HYPER-MUTATED AND ULTRA-MUTATED GBMS Neuro-Oncology. 17: v94.3-v94. DOI: 10.1093/Neuonc/Nov215.15  0.283
2014 Brennan C, Verhaak R, McKenna A, Campos B, Noushmehr H, Salama S, Zheng S, Chakravarty D, Sanborn J, Berman S, Beroukhim R, Bernard B, Wu C, Genovese G, Shmulevich I, ... ... Sander C, et al. The Somatic Genomic Landscape of Glioblastoma Cell. 157: 753. DOI: 10.1016/J.Cell.2014.04.004  0.283
1992 Stouten PFW, Sander C, Ruigrok RWH, Cusack S. New triple-helical model for the shaft of the adenovirus fibre Journal of Molecular Biology. 226: 1073-1084. PMID 1518045 DOI: 10.1016/0022-2836(92)91053-R  0.282
2015 Wanjala J, Taylor BS, Chapinski C, Hieronymus H, Wongvipat J, Chen Y, Nanjangud GJ, Schultz N, Xie Y, Liu S, Lu W, Yang Q, Sander C, Chen Z, Sawyers CL, et al. Identifying actionable targets through integrative analyses of GEM model and human prostate cancer genomic profiling. Molecular Cancer Therapeutics. 14: 278-88. PMID 25381262 DOI: 10.1158/1535-7163.Mct-14-0542-T  0.282
2013 Miller ML, Sander C, VanHook AM. Science Signaling Podcast: 24 September 2013 Science Signaling. 6. DOI: 10.1126/Scisignal.2004717  0.281
2011 Palaskas N, Larson SM, Schultz N, Komisopoulou E, Wong J, Rohle D, Campos C, Yannuzzi N, Osborne JR, Linkov I, Kastenhuber ER, Taschereau R, Plaisier SB, Tran C, Heguy A, ... ... Sander C, et al. 18F-fluorodeoxy-glucose positron emission tomography marks MYC-overexpressing human basal-like breast cancers. Cancer Research. 71: 5164-74. PMID 21646475 DOI: 10.1158/0008-5472.Can-10-4633  0.28
2017 Sinha R, Winer AG, Chevinsky M, Jakubowski C, Chen YB, Dong Y, Tickoo SK, Reuter VE, Russo P, Coleman JA, Sander C, Hsieh JJ, Hakimi AA. Analysis of renal cancer cell lines from two major resources enables genomics-guided cell line selection. Nature Communications. 8: 15165. PMID 28489074 DOI: 10.1038/Ncomms15165  0.279
1996 Hooft RWW, Vriend G, Sander C, Abola EE. Errors in protein structures [3] Nature. 381: 272. PMID 8692262 DOI: 10.1038/381272A0  0.278
2015 Ciriello G, Gatza ML, Beck AH, Wilkerson MD, Rhie SK, Pastore A, Zhang H, McLellan M, Yau C, Kandoth C, Bowlby R, Shen H, Hayat S, Fieldhouse R, Lester SC, ... ... Sander C, et al. Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer. Cell. 163: 506-19. PMID 26451490 DOI: 10.1016/J.Cell.2015.09.033  0.278
1995 Chinea G, Padron G, Hooft RWW, Sander C, Vriend G. The use of position-specific rotamers in model building by homology Proteins: Structure, Function and Genetics. 23: 415-421. PMID 8710834 DOI: 10.1002/Prot.340230315  0.277
2014 Hieronymus H, Schultz N, Gopalan A, Carver BS, Chang MT, Xiao Y, Heguy A, Huberman K, Bernstein M, Assel M, Murali R, Vickers A, Scardino PT, Sander C, Reuter V, et al. Copy number alteration burden predicts prostate cancer relapse. Proceedings of the National Academy of Sciences of the United States of America. 111: 11139-44. PMID 25024180 DOI: 10.1073/Pnas.1411446111  0.276
2009 Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, ... ... Sander C, et al. The Systems Biology Graphical Notation. Nature Biotechnology. 27: 735-41. PMID 19668183 DOI: 10.1038/Nbt.1558  0.276
2011 Somwar R, Erdjument-Bromage H, Larsson E, Shum D, Lockwood WW, Yang G, Sander C, Ouerfelli O, Tempst PJ, Djaballah H, Varmus HE. Superoxide dismutase 1 (SOD1) is a target for a small molecule identified in a screen for inhibitors of the growth of lung adenocarcinoma cell lines. Proceedings of the National Academy of Sciences of the United States of America. 108: 16375-80. PMID 21930909 DOI: 10.1073/Pnas.1113554108  0.274
2005 Yeh JJ, Antonescu CA, Socci ND, Grobmyer SR, Sander C, Brennan MF, Singer S. Significance of necrosis and gene expression profiling in high-grade myxoid/round cell liposarcoma (MRLS) of the extremity. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 23: 9015. PMID 27945550 DOI: 10.1200/Jco.2005.23.16_Suppl.9015  0.274
1996 Hooft RWW, Sander C, Vriend G. Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures Proteins: Structure, Function and Genetics. 26: 363-376. PMID 8990493 DOI: 10.1002/(Sici)1097-0134(199612)26:4<363::Aid-Prot1>3.0.Co;2-D  0.274
1993 Cronet P, Sander C, Vriend G. Modeling of transmembrane seven helix bundles Protein Engineering. 6: 59-64. PMID 8381957 DOI: 10.1093/Protein/6.1.59  0.274
2016 Winer AG, Senbabaoglu Y, Gejman R, Ostrovnaya I, Kaffenberger SD, Voss MH, Coleman JA, Russo P, Hsieh J, Sander C, Hakimi AA. The immune landscape of renal cell carcinoma and its association with intratumoral clonality. Journal of Clinical Oncology. 34: 605-605. DOI: 10.1200/Jco.2016.34.2_Suppl.605  0.273
2011 Ugras S, Brill E, Jacobsen A, Hafner M, Socci ND, Decarolis PL, Khanin R, O'Connor R, Mihailovic A, Taylor BS, Sheridan R, Gimble JM, Viale A, Crago A, Antonescu CR, ... Sander C, et al. Small RNA sequencing and functional characterization reveals MicroRNA-143 tumor suppressor activity in liposarcoma. Cancer Research. 71: 5659-69. PMID 21693658 DOI: 10.1158/0008-5472.Can-11-0890  0.273
1994 Buchberger A, Valencia A, McMacken R, Sander C, Bukau B. The chaperone function of DnaK requires the coupling of ATPase activity with substrate binding through residue E171. The Embo Journal. 13: 1687-1695. DOI: 10.1002/J.1460-2075.1994.Tb06433.X  0.272
2013 Gauthier NP, Soufi B, Walkowicz WE, Pedicord VA, Mavrakis KJ, Macek B, Gin DY, Sander C, Miller ML. Cell-selective labeling using amino acid precursors for proteomic studies of multicellular environments. Nature Methods. 10: 768-73. PMID 23817070 DOI: 10.1038/Nmeth.2529  0.272
2016 Şenbabaoğlu Y, Gejman RS, Winer AG, Liu M, Van Allen EM, de Velasco G, Miao D, Ostrovnaya I, Drill E, Luna A, Weinhold N, Lee W, Manley BJ, Khalil DN, Kaffenberger SD, ... ... Sander C, et al. Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures. Genome Biology. 17: 231. PMID 27855702 DOI: 10.1186/S13059-016-1092-Z  0.271
2010 Mitsiades N, Antipin Y, Reva B, Schultz N, Danila DC, Sung CC, Anand A, Sander C, Scher HI. A gene expression signature associated with sensitivity to the multikinase inhibitor dasatinib: Implications for development of a noninvasive biomarker for personalized therapy based on circulating tumor cell analysis. Journal of Clinical Oncology. 28: 4544-4544. DOI: 10.1200/Jco.2010.28.15_Suppl.4544  0.27
2005 Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grässer FA, van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, et al. Identification of microRNAs of the herpesvirus family. Nature Methods. 2: 269-76. PMID 15782219 DOI: 10.1038/Nmeth746  0.269
2015 Hakimi AA, Tickoo SK, Jacobsen A, Sarungbam J, Sfakianos JP, Sato Y, Morikawa T, Kume H, Fukayama M, Homma Y, Chen YB, Sankin AI, Mano R, Coleman JA, Russo P, ... ... Sander C, et al. TCEB1-mutated renal cell carcinoma: a distinct genomic and morphological subtype. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 28: 845-53. PMID 25676555 DOI: 10.1038/Modpathol.2015.6  0.269
2009 Pratilas CA, Taylor BS, Ye Q, Viale A, Sander C, Solit DB, Rosen N. (V600E)BRAF is associated with disabled feedback inhibition of RAF-MEK signaling and elevated transcriptional output of the pathway. Proceedings of the National Academy of Sciences of the United States of America. 106: 4519-24. PMID 19251651 DOI: 10.1073/Pnas.0900780106  0.269
2001 Kresse HP, Czubayko M, Nyakatura G, Vriend G, Sander C, Bloecker H. Four-helix bundle topology re-engineered: Monomeric Rop protein variants with different loop arrangements Protein Engineering. 14: 897-901. PMID 11742109 DOI: 10.1093/Protein/14.11.897  0.268
2005 Landgraf P, Rice A, Iovino N, Fulci V, Sheridan R, Fuchs U, Schmid I, Sander C, Chen M, Russo JJ, Ju J, Tam W, Macino G, Zavolan M, Borkhardt A, et al. miRNA Profiling of Pediatric ALL and Non-Hodgkin Lymphomas. Blood. 106: 2719-2719. DOI: 10.1182/Blood.V106.11.2719.2719  0.268
2019 Saito Y, Li L, Coyaud E, Luna A, Sander C, Raught B, Asara JM, Brown M, Muthuswamy SK. LLGL2 rescues nutrient stress by promoting leucine uptake in ER breast cancer. Nature. PMID 30996345 DOI: 10.1038/S41586-019-1126-2  0.268
2016 Landa I, Ibrahimpasic T, Boucai L, Sinha R, Knauf JA, Shah RH, Dogan S, Ricarte-Filho JC, Krishnamoorthy GP, Xu B, Schultz N, Berger MF, Sander C, Taylor BS, Ghossein R, et al. Genomic and transcriptomic hallmarks of poorly differentiated and anaplastic thyroid cancers. The Journal of Clinical Investigation. PMID 26878173 DOI: 10.1172/Jci85271  0.267
2013 Hakimi AA, Furberg H, Zabor EC, Jacobsen A, Schultz N, Ciriello G, Mikklineni N, Fiegoli B, Kim PH, Voss MH, Shen H, Laird PW, Sander C, Reuter VE, Motzer RJ, et al. An epidemiologic and genomic investigation into the obesity paradox in renal cell carcinoma. Journal of the National Cancer Institute. 105: 1862-70. PMID 24285872 DOI: 10.1093/Jnci/Djt310  0.263
2011 Chen M, Pratt CP, Zeeman ME, Schultz N, Taylor BS, O'Neill A, Castillo-Martin M, Nowak DG, Naguib A, Grace DM, Murn J, Navin N, Atwal GS, Sander C, Gerald WL, et al. Identification of PHLPP1 as a tumor suppressor reveals the role of feedback activation in PTEN-mutant prostate cancer progression. Cancer Cell. 20: 173-86. PMID 21840483 DOI: 10.1016/J.Ccr.2011.07.013  0.262
1997 Holm L, Sander C. New structure — novel fold? Structure. 5: 165-171. PMID 9032077 DOI: 10.1016/S0969-2126(97)00176-7  0.261
1991 Eberle W, Sander C, Klaus W, Schmidt B, Figura Kv, Peters C. The essential tyrosine of the internalization signal in lysosomal acid phosphatase is part of a β turn Cell. 67: 1203-1209. PMID 1760845 DOI: 10.1016/0092-8674(91)90296-B  0.261
2007 Fulci V, Chiaretti S, Goldoni M, Azzalin G, Carucci N, Tavolaro S, Castellano L, Magrelli A, Citarella F, Messina M, Maggio R, Peragine N, Santangelo S, Mauro FR, Landgraf P, ... ... Sander C, et al. Quantitative technologies establish a novel microRNA profile of chronic lymphocytic leukemia. Blood. 109: 4944-51. PMID 17327404 DOI: 10.1182/Blood-2006-12-062398  0.261
2009 Yi R, Pasolli HA, Landthaler M, Hafner M, Ojo T, Sheridan R, Sander C, O'Carroll D, Stoffel M, Tuschl T, Fuchs E. DGCR8-dependent microRNA biogenesis is essential for skin development. Proceedings of the National Academy of Sciences of the United States of America. 106: 498-502. PMID 19114655 DOI: 10.1073/Pnas.0810766105  0.261
2013 Shinbrot E, Weinhold N, Schultz N, Donehower LA, Drummond J, Chang K, Gibbs R, Sander C, Wheeler DA. Abstract 1114: Polymerase epsilon (POLE) mutations and mutator phenotypes in colorectal and endometrial tumors. Cancer Research. 73: 1114-1114. DOI: 10.1158/1538-7445.Am2013-1114  0.26
2014 Rendleman J, Antipin Y, Reva B, Adaniel C, Przybylo JA, Dutra-Clarke A, Hansen N, Heguy A, Huberman K, Borsu L, Paltiel O, Ben-Yehuda D, Brown JR, Freedman AS, Sander C, et al. Genetic variation in DNA repair pathways and risk of non-Hodgkin's lymphoma. Plos One. 9: e101685. PMID 25010664 DOI: 10.1371/Journal.Pone.0101685  0.26
2014 Shinbrot E, Henninger EE, Weinhold N, Covington KR, Göksenin AY, Schultz N, Chao H, Doddapaneni H, Muzny DM, Gibbs RA, Sander C, Pursell ZF, Wheeler DA. Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication. Genome Research. 24: 1740-50. PMID 25228659 DOI: 10.1101/Gr.174789.114  0.259
2012 Mitsiades N, Sung CC, Schultz N, Danila DC, He B, Eedunuri VK, Fleisher M, Sander C, Sawyers CL, Scher HI. Distinct patterns of dysregulated expression of enzymes involved in androgen synthesis and metabolism in metastatic prostate cancer tumors. Cancer Research. 72: 6142-52. PMID 22971343 DOI: 10.1158/0008-5472.Can-12-1335  0.258
2014 Hakimi AA, Chevinsky M, Hsieh JJ, Sander C, Sinha R. Mp23-11 Genomic Comparison Of Renal Cell Carcinoma Cell Lines To Human Tumors The Journal of Urology. 191. DOI: 10.1016/J.Juro.2014.02.879  0.255
2003 Vitkup D, Sander C, Church GM. The amino-acid mutational spectrum of human genetic disease. Genome Biology. 4: R72. PMID 14611658 DOI: 10.1186/Gb-2003-4-11-R72  0.254
1994 Oliveira L, Paiva AC, Sander C, Vriend G. A common step for signal transduction in G protein-coupled receptors. Trends in Pharmacological Sciences. 15: 170-2. PMID 8091507 DOI: 10.1016/0165-6147(94)90137-6  0.253
2006 Vilar JM, Jansen R, Sander C. Signal processing in the TGF-beta superfamily ligand-receptor network. Plos Computational Biology. 2: e3. PMID 16446785 DOI: 10.1371/Journal.Pcbi.0020003  0.25
2013 Stein RR, Bucci V, Toussaint NC, Buffie CG, Rätsch G, Pamer EG, Sander C, Xavier JB. Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. Plos Computational Biology. 9: e1003388. PMID 24348232 DOI: 10.1371/Journal.Pcbi.1003388  0.25
2009 Rajasethupathy P, Fiumara F, Sheridan R, Betel D, Puthanveettil SV, Russo JJ, Sander C, Tuschl T, Kandel E. Characterization of small RNAs in Aplysia reveals a role for miR-124 in constraining synaptic plasticity through CREB. Neuron. 63: 803-17. PMID 19778509 DOI: 10.1016/J.Neuron.2009.05.029  0.249
1995 Eisenhaber F, Lijnzaad P, Argos P, Sander C, Scharf M. The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies Journal of Computational Chemistry. 16: 273-284. DOI: 10.1002/Jcc.540160303  0.248
2001 Sander C. Bioinformatics - Challenges in 2001 Bioinformatics. 17: 1-2. DOI: 10.1093/Bioinformatics/17.1.1  0.247
2009 Mitsiades N, Schultz N, Taylor BS, Hieronymus H, Satagopan J, Scardino PT, Reuter VE, Sander C, Sawyers C, Scher HI. Increased expression of androgen receptor (AR) and enzymes involved in androgen synthesis in metastatic prostate cancer: Targets for novel personalized therapies. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 27: 5002. PMID 27962896 DOI: 10.1200/Jco.2009.27.15_Suppl.5002  0.246
2007 Cotignola J, Reva B, Mitra N, Ishill N, Chuai S, Patel A, Shah S, Vanderbeek G, Coit D, Busam K, Halpern A, Houghton A, Sander C, Berwick M, Orlow I. Matrix Metalloproteinase-9 (MMP-9) polymorphisms in patients with cutaneous malignant melanoma. Bmc Medical Genetics. 8: 10. PMID 17346338 DOI: 10.1186/1471-2350-8-10  0.246
2011 Clegg NJ, Couto SS, Wongvipat J, Hieronymus H, Carver BS, Taylor BS, Ellwood-Yen K, Gerald WL, Sander C, Sawyers CL. MYC cooperates with AKT in prostate tumorigenesis and alters sensitivity to mTOR inhibitors. Plos One. 6: e17449. PMID 21394210 DOI: 10.1371/Journal.Pone.0017449  0.244
2018 Stein RR, Tanoue T, Szabady RL, Bhattarai SK, Olle B, Norman JM, Suda W, Oshima K, Hattori M, Gerber GK, Sander C, Honda K, Bucci V. Computer-guided design of optimal microbial consortia for immune system modulation. Elife. 7. PMID 29664397 DOI: 10.7554/Elife.30916  0.243
2007 Tuschl T, Landgraf P, Ludwig J, Landthaler M, Sander C, Zavolan M. Mechanisms of small RNA mediated mammalian gene silencing The Faseb Journal. 21. DOI: 10.1096/Fasebj.21.5.A149-C  0.243
2005 Singer S, Socci ND, Sambol E, O’Conner R, Eckle P, Geha R, Maki RG, Sander C, Antonescu CR. Molecular profiling of liposarcoma subtypes Journal of Clinical Oncology. 23: 9016-9016. DOI: 10.1200/Jco.2005.23.16_Suppl.9016  0.243
1993 Sander C, Yano T, Clark H, Harris C, Longo D, Jaffe E, Raffeld M. p53 mutation is associated with progression in follicular lymphomas Blood. 82: 1994-2004. DOI: 10.1182/Blood.V82.7.1994.Bloodjournal8271994  0.243
2013 Pflugfelder A, Kochs C, Blum A, Capellaro M, Czeschik C, Dettenborn T, Dill D, Dippel E, Eigentler T, Feyer P, Follmann M, Frerich B, Ganten MK, Gärtner J, Gutzmer R, ... ... Sander C, et al. Malignant melanoma S3-guideline "diagnosis, therapy and follow-up of melanoma". Journal Der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : Jddg. 11: 1-116, 1-126. PMID 24028775 DOI: 10.1111/Ddg.12113_Suppl  0.242
1993 Abruzzo L, Schmidt K, Weiss L, Jaffe E, Medeiros L, Sander C, Raffeld M. B-cell lymphoma after angioimmunoblastic lymphadenopathy: a case with oligoclonal gene rearrangements associated with Epstein-Barr virus. Blood. 82: 241-246. DOI: 10.1182/Blood.V82.1.241.Bloodjournal821241  0.24
1993 Stouten PFW, Frömmel C, Nakamura H, Sander C. An effective solvation term based on atomic occupancies for use in protein simulations Molecular Simulation. 10: 97-120. DOI: 10.1080/08927029308022161  0.24
1995 Holm L, Sander C. Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme. The Embo Journal. 14: 1287-1293. DOI: 10.1002/J.1460-2075.1995.Tb07114.X  0.239
2017 Ebhardt H, Root A, Beizaei A, Liu Y, Gauthier N, Sander C, Aebersold R. Systems pharmacology and quantitative proteomics for developing targeted triple therapy European Urology Supplements. 16: e1302-e1303. DOI: 10.1016/S1569-9056(17)30807-2  0.239
2009 Mu P, Han YC, Betel D, Yao E, Squatrito M, Ogrodowski P, de Stanchina E, D'Andrea A, Sander C, Ventura A. Genetic dissection of the miR-17~92 cluster of microRNAs in Myc-induced B-cell lymphomas. Genes & Development. 23: 2806-11. PMID 20008931 DOI: 10.1101/Gad.1872909  0.239
2012 Rajasethupathy P, Antonov I, Sheridan R, Frey S, Sander C, Tuschl T, Kandel ER. A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity. Cell. 149: 693-707. PMID 22541438 DOI: 10.1016/J.Cell.2012.02.057  0.238
2020 Liu EM, Luna A, Dong G, Sander C. netboxr: Automated discovery of biological process modules by network analysis in R. Plos One. 15: e0234669. PMID 33137091 DOI: 10.1371/journal.pone.0234669  0.238
2017 Şenbabaoğlu Y, Gejman RS, Winer AG, Liu M, Van Allen EM, de Velasco G, Miao D, Ostrovnaya I, Drill E, Luna A, Weinhold N, Lee W, Manley BJ, Khalil DN, Kaffenberger SD, ... ... Sander C, et al. Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures. Genome Biology. 18: 46. PMID 28249590 DOI: 10.1186/S13059-017-1180-8  0.238
2013 Li L, Shen C, Nakamura E, Ando K, Signoretti S, Beroukhim R, Cowley GS, Lizotte P, Liberzon E, Bair S, Root DE, Tamayo P, Tsherniak A, Cheng SC, Tabak B, ... ... Sander C, et al. SQSTM1 is a pathogenic target of 5q copy number gains in kidney cancer. Cancer Cell. 24: 738-50. PMID 24332042 DOI: 10.1016/J.Ccr.2013.10.025  0.238
2020 Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, ... ... Sander C, et al. Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature. 578: 102-111. PMID 32025015 DOI: 10.1038/s41586-020-1965-x  0.238
2020 Yuan C, Babic A, Khalaf N, Nowak JA, Brais LK, Rubinson DA, Ng K, Aguirre AJ, Pandharipande PV, Fuchs CS, Giovannucci EL, Stampfer MJ, Rosenthal MH, Sander C, Kraft P, et al. Diabetes, Weight Change, and Pancreatic Cancer Risk. Jama Oncology. PMID 32789511 DOI: 10.1001/Jamaoncol.2020.2948  0.238
1992 Lehmann LE, Eberle W, Krull S, Prill V, Schmidt B, Sander C, Figura Kv, Peters C. The internalization signal in the cytoplasmic tail of lysosomal acid phosphatase consists of the hexapeptide PGYRHV. The Embo Journal. 11: 4391-4399. DOI: 10.1002/J.1460-2075.1992.Tb05539.X  0.237
2006 Greisser J, Palmedo G, Sander C, Kutzner H, Kazakov DV, Roos M, Burg G, Kempf W. Detection of clonal rearrangement of T-cell receptor genes in the diagnosis of primary cutaneous CD30 lymphoproliferative disorders. Journal of Cutaneous Pathology. 33: 711-715. PMID 17083688 DOI: 10.1111/J.1600-0560.2006.00560.X  0.237
2019 Luna A, Wong JV, Demir E, Rodchenkov I, Babur Ö, Sander C, Bader GD. Abstract 3451: Interpreting gene lists from -omics experiments Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-3451  0.237
1992 Ouzounis C, Sander C. TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes Cell. 71: 189-190. PMID 1423586 DOI: 10.1016/0092-8674(92)90347-F  0.237
2005 Willemze R, Jaffe ES, Burg G, Cerroni L, Berti E, Swerdlow SH, Ralfkiaer E, Chimenti S, Diaz-Perez JL, Duncan LM, Grange F, Harris NL, Kempf W, Kerl H, Kurrer M, ... ... Sander C, et al. WHO-EORTC classification for cutaneous lymphomas. Blood. 105: 3768-85. PMID 15692063 DOI: 10.1182/Blood-2004-09-3502  0.236
2002 Sander C. The Journal Bioinformatics, key medium for computational biology Bioinformatics. 18: 1-2. DOI: 10.1093/Bioinformatics/18.1.1  0.236
2005 Burg G, Kempf W, Cozzio A, Feit J, Willemze R, S Jaffe E, Dummer R, Berti E, Cerroni L, Chimenti S, Diaz-Perez JL, Grange F, Harris NL, Kazakov DV, Kerl H, ... ... Sander C, et al. WHO/EORTC classification of cutaneous lymphomas 2005: histological and molecular aspects. Journal of Cutaneous Pathology. 32: 647-74. PMID 16293178 DOI: 10.1111/J.0303-6987.2005.00495.X  0.234
2009 King JC, Xu J, Wongvipat J, Hieronymus H, Carver BS, Leung DH, Taylor BS, Sander C, Cardiff RD, Couto SS, Gerald WL, Sawyers CL. Cooperativity of TMPRSS2-ERG with PI3-kinase pathway activation in prostate oncogenesis. Nature Genetics. 41: 524-6. PMID 19396167 DOI: 10.1038/Ng.371  0.234
2021 Joshi S, Gomes ED, Wang T, Corben A, Taldone T, Gandu S, Xu C, Sharma S, Buddaseth S, Yan P, Chan LYL, Gokce A, Rajasekhar VK, Shrestha L, Panchal P, ... ... Sander C, et al. Pharmacologically controlling protein-protein interactions through epichaperomes for therapeutic vulnerability in cancer. Communications Biology. 4: 1333. PMID 34824367 DOI: 10.1038/s42003-021-02842-3  0.233
1992 Tuparev G, Vriend G, Sander C. GCI: a network server for interactive 3D graphics. Journal of Molecular Graphics. 10: 12-16. PMID 1504047 DOI: 10.1016/0263-7855(92)80003-V  0.231
2010 Xavier JB, Sander C. Principle of system balance for drug interactions. The New England Journal of Medicine. 362: 1339-40. PMID 20375413 DOI: 10.1056/Nejmcibr1001270  0.231
2007 Randall G, Panis M, Cooper JD, Tellinghuisen TL, Sukhodolets KE, Pfeffer S, Landthaler M, Landgraf P, Kan S, Lindenbach BD, Chien M, Weir DB, Russo JJ, Ju J, Brownstein MJ, ... ... Sander C, et al. Cellular cofactors affecting hepatitis C virus infection and replication. Proceedings of the National Academy of Sciences of the United States of America. 104: 12884-9. PMID 17616579 DOI: 10.1073/Pnas.0704894104  0.23
2015 Winer A, Senbabaoglu Y, Kaffenberger S, Coleman J, Russo P, Sander C, Hsieh J, Hakimi A. MP47-13 MUTATIONAL AND PROGNOSTIC ASSOCIATIONS OF IMMUNE CELL SIGNATURES IN CLEAR CELL RENAL CELL CARCINOMA Journal of Urology. 193. DOI: 10.1016/J.Juro.2015.02.1533  0.223
1986 Cheung A, Leban J, Shaw AR, Merkli B, Stocker J, Chizzolini C, Sander C, Perrin LH. Immunization with synthetic peptides of a plasmodium falciparum surface antigen induces antimerozoite antibodies Proceedings of the National Academy of Sciences of the United States of America. 83: 8328-8332. PMID 3534885 DOI: 10.1073/Pnas.83.21.8328  0.223
2015 Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M, Viale A, Littmann E, van den Brink MR, Jenq RR, Taur Y, Sander C, et al. Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature. 517: 205-8. PMID 25337874 DOI: 10.1038/Nature13828  0.222
2023 Sun R, Ge W, Zhu Y, Sayad A, Luna A, Lyu M, Liang S, Tobalina L, Rajapakse VN, Yu C, Zhang H, Fang J, Wu F, Xie H, Saez-Rodriguez J, ... ... Sander C, et al. Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets. Molecular & Cellular Proteomics : McP. 100602. PMID 37343696 DOI: 10.1016/j.mcpro.2023.100602  0.219
2002 Steinhoff M, Hummel M, Anagnostopoulos I, Kaudewitz P, Seitz V, Assaf C, Sander C, Stein H. Single-cell analysis of CD30+ cells in lymphomatoid papulosis demonstrates a common clonal T-cell origin. Blood. 100: 578-584. PMID 12091351 DOI: 10.1182/Blood-2001-12-0199  0.219
1982 Kabsch W, Sander C, Trifonov EN. The ten helical twist angles of B-DNA Nucleic Acids Research. 10: 1097-1104. PMID 7063417 DOI: 10.1093/Nar/10.3.1097  0.217
2017 Llamas-Velasco M, Kempf W, Cota C, Fernández-Figueras MT, Lee J, Ferrara G, Sander C, Shapiro PE, Requena L, Kutzner H. Multiple Eruptive Epithelioid Hemangiomas: A Subset of Cutaneous Cellular Epithelioid Hemangioma With Expression of FOS-B. The American Journal of Surgical Pathology. PMID 29266025 DOI: 10.1097/Pas.0000000000001003  0.216
1992 Kramarsky B, Sander C. Chapter 6 Electron microscopy of human herpesvirus-6 (HHV-6) Perspectives in Medical Virology. 4: 59-68. DOI: 10.1016/S0168-7069(08)70057-0  0.214
1985 Kabsch W, Sander C. Identical pentapeptides with different backbones. Nature. 317: 207-207. PMID 4047161 DOI: 10.1038/317207A0  0.214
1993 Holm L, Sander C. Globin fold in a bacterial toxin Nature. 361: 309-309. PMID 8426649 DOI: 10.1038/361309A0  0.214
2012 Kempf W, Denisjuk N, Kerl K, Cozzio A, Sander C. [Primary cutaneous B-cell lymphomas]. Journal Der Deutschen Dermatologischen Gesellschaft. 10: 12-23. PMID 22212142 DOI: 10.1111/J.1610-0387.2011.07852.X  0.213
1994 Holm L, Sander C, Murzin A. Three sisters, different names. Nature Structural & Molecular Biology. 1: 146-147. PMID 7656031 DOI: 10.1038/Nsb0394-146  0.207
2009 Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, ... ... Sander C, et al. Erratum: The Systems Biology Graphical Notation Nature Biotechnology. 27: 864-864. DOI: 10.1038/Nbt0909-864D  0.207
2020 Luna A, Elloumi F, Varma S, Wang Y, Rajapakse VN, Aladjem MI, Robert J, Sander C, Pommier Y, Reinhold WC. CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics. Nucleic Acids Research. PMID 33196823 DOI: 10.1093/nar/gkaa968  0.206
2023 de Bruijn I, Kundra R, Mastrogiacomo B, Tran TN, Sikina L, Mazor T, Li X, Ochoa A, Zhao G, Lai B, Abeshouse A, Baiceanu D, Ciftci E, Dogrusoz U, Dufilie A, ... ... Sander C, et al. Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal. Cancer Research. PMID 37668528 DOI: 10.1158/0008-5472.CAN-23-0816  0.201
2013 Pflugfelder A, Kochs C, Blum A, Capellaro M, Czeschik C, Dettenborn T, Dill D, Dippel E, Eigentler T, Feyer P, Follmann M, Frerich B, Ganten MK, Gärtner J, Gutzmer R, ... ... Sander C, et al. S3-guideline "diagnosis, therapy and follow-up of melanoma" -- short version. Journal Der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : Jddg. 11: 563-602. PMID 23721604 DOI: 10.1111/Ddg.12044  0.2
2018 Ebhardt HA, Root A, Liu Y, Gauthier NP, Sander C, Aebersold R. Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer. Npj Systems Biology and Applications. 4: 26. PMID 29977602 DOI: 10.1038/s41540-018-0064-1  0.198
2018 Stein RR, Tanoue T, Szabady RL, Bhattarai SK, Olle B, Norman JM, Suda W, Oshima K, Hattori M, Gerber GK, Sander C, Honda K, Bucci V. Author response: Computer-guided design of optimal microbial consortia for immune system modulation Elife. DOI: 10.7554/Elife.30916.017  0.195
2013 Pflugfelder A, Kochs C, Blum A, Capellaro M, Czeschik C, Dettenborn T, Dill D, Dippel E, Eigentler T, Feyer P, Follmann M, Frerich B, Ganten MK, Gärtner J, Gutzmer R, ... ... Sander C, et al. Malignes Melanom S3‐Leitlinie “Diagnostik, Therapie und Nachsorge des Melanoms” Journal Der Deutschen Dermatologischen Gesellschaft. 11: 1-126. DOI: 10.1111/Ddg.12113  0.194
2023 Zhang F, Luna A, Tan T, Chen Y, Sander C, Guo T. COVIDpro: Database for Mining Protein Dysregulation in Patients with COVID-19. Journal of Proteome Research. PMID 37555633 DOI: 10.1021/acs.jproteome.3c00092  0.193
2021 Babur Ö, Luna A, Korkut A, Durupinar F, Siper MC, Dogrusoz U, Vaca Jacome AS, Peckner R, Christianson KE, Jaffe JD, Spellman PT, Aslan JE, Sander C, Demir E. Causal interactions from proteomic profiles: Molecular data meet pathway knowledge. Patterns (New York, N.Y.). 2: 100257. PMID 34179843 DOI: 10.1016/j.patter.2021.100257  0.192
1995 Holm L, Sander C. DNA polymerase β belongs to an ancient nucleotidyltransferase superfamily Trends in Biochemical Sciences. 20: 345-347. PMID 7482698 DOI: 10.1016/S0968-0004(00)89071-4  0.19
2013 Pflugfelder A, Kochs C, Blum A, Capellaro M, Czeschik C, Dettenborn T, Dill D, Dippel E, Eigentler T, Feyer P, Follmann M, Frerich B, Ganten MK, Gärtner J, Gutzmer R, ... ... Sander C, et al. S3-Leitlinie ,,Diagnostik, Therapie und Nachsorge des Melanoms” – Kurzfassung Journal Der Deutschen Dermatologischen Gesellschaft. 11: 563-594. DOI: 10.1111/Ddg.12044_Suppl  0.187
2003 Sander C. Growth in Bioinformatics Bioinformatics. 19: 1-1. DOI: 10.1093/Bioinformatics/19.1.1  0.186
2012 Kempf W, Denisjuk N, Kerl K, Cozzio A, Sander C. B‐Zell‐Lymphome der Haut Journal Der Deutschen Dermatologischen Gesellschaft. 10: 12-24. DOI: 10.1111/J.1610-0387.2011.07852_Suppl.X  0.182
2015 Sander C. [In Process Citation]. Journal Der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : Jddg. 13: 265. PMID 25721646 DOI: 10.1111/Ddg.12605  0.181
1986 Sander C. MaxTwist: energy minimization of macromolecules in intelligent degrees of freedom Journal of Molecular Graphics. 4: 181-182. DOI: 10.1016/0263-7855(86)80030-3  0.178
2015 Sander C. Ausschreibung: G.K. Steigleder‐Preis für Dermatohistologie der Arbeitsgemeinschaft Dermatologische Histologie (ADH) 2015 Journal Der Deutschen Dermatologischen Gesellschaft. 13: 179-179. DOI: 10.1111/Ddg.12603  0.173
2004 Pradines J, Rudolph-Owen L, Hunter J, Leroy P, Cary M, Coopersmith R, Dancik V, Eltsefon Y, Farutin V, Leroy C, Rees J, Rose D, Rowley S, Ruttenberg A, Wieghardt P, ... Sander C, et al. Detection of activity centers in cellular pathways using transcript profiling. Journal of Biopharmaceutical Statistics. 14: 701-21. PMID 15468760 DOI: 10.1081/BIP-200025678  0.17
2004 Fölster‐Holst R, Feller AC, Sander C. Verruziforme Hyperkeratosen auf Erythemen an den distalen Extremitäten bei einem 19jährigen jungen Mann Journal Der Deutschen Dermatologischen Gesellschaft. 2: 705-706. PMID 16279236 DOI: 10.1046/J.1439-0353.2004.04055.X  0.169
2020 Haider S, Tyekucheva S, Prandi D, Fox NS, Ahn J, Xu AW, Pantazi A, Park PJ, Laird PW, Sander C, Wang W, Demichelis F, Loda M, Boutros PC. Systematic Assessment of Tumor Purity and Its Clinical Implications. Jco Precision Oncology. 4. PMID 33015524 DOI: 10.1200/PO.20.00016  0.168
2022 Zhang F, Luna A, Tan T, Chen Y, Sander C, Guo T. COVIDpro: Database for mining protein dysregulation in patients with COVID-19. Biorxiv : the Preprint Server For Biology. PMID 36203550 DOI: 10.1101/2022.09.27.509819  0.163
2014 Voss MH, Hakimi AA, Pham CG, Brannon AR, Chen YB, Cunha LF, Akin O, Liu H, Takeda S, Scott SN, Socci ND, Viale A, Schultz N, Sander C, Reuter VE, et al. Tumor genetic analyses of patients with metastatic renal cell carcinoma and extended benefit from mTOR inhibitor therapy. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 20: 1955-64. PMID 24622468 DOI: 10.1158/1078-0432.CCR-13-2345  0.154
2021 Sinha R, Luna A, Schultz N, Sander C. A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles. Cell Reports Methods. 1: 100039. PMID 35475239 DOI: 10.1016/j.crmeth.2021.100039  0.15
2023 Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, ... ... Sander C, et al. Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature. PMID 36697832 DOI: 10.1038/s41586-022-05599-9  0.145
2024 Jones EM, Su Y, Sander C, Justman QA, Springer M, Silver PA. LanTERN: A Fluorescent Sensor That Specifically Responds to Lanthanides. Acs Synthetic Biology. PMID 38377571 DOI: 10.1021/acssynbio.3c00600  0.118
2015 Lau E, Sedy J, Sander C, Shaw MA, Feng Y, Scortegagna M, Claps G, Robinson S, Cheng P, Srivas R, Soonthornvacharin S, Ideker T, Bosenberg M, Gonzalez R, Robinson W, et al. Transcriptional repression of IFNβ1 by ATF2 confers melanoma resistance to therapy. Oncogene. PMID 25728676 DOI: 10.1038/Onc.2015.22  0.115
2021 Franz A, Coscia F, Shen C, Charaoui L, Mann M, Sander C. Molecular response to PARP1 inhibition in ovarian cancer cells as determined by mass spectrometry based proteomics. Journal of Ovarian Research. 14: 140. PMID 34686201 DOI: 10.1186/s13048-021-00886-x  0.115
2021 Kenner B, Chari ST, Kelsen D, Klimstra DS, Pandol SJ, Rosenthal M, Rustgi AK, Taylor JA, Yala A, Abul-Husn N, Andersen DK, Bernstein D, Brunak S, Canto MI, Eldar YC, ... ... Sander C, et al. Artificial Intelligence and Early Detection of Pancreatic Cancer: 2020 Summative Review. Pancreas. 50: 251-279. PMID 33835956 DOI: 10.1097/MPA.0000000000001762  0.106
2015 Böhrnsen F, Fricke M, Sander C, Leha A, Schliephake H, Kramer FJ. Interactions of human MSC with head and neck squamous cell carcinoma cell line PCI-13 reduce markers of epithelia-mesenchymal transition. Clinical Oral Investigations. 19: 1121-8. PMID 25346374 DOI: 10.1007/s00784-014-1338-7  0.103
2023 Cui A, Huang T, Li S, Ma A, Pérez JL, Sander C, Keskin DB, Wu CJ, Fraenkel E, Hacohen N. Dictionary of immune responses to cytokines at single-cell resolution. Nature. PMID 38057668 DOI: 10.1038/s41586-023-06816-9  0.092
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Observation of the associated production of a single top quark and a W boson in pp collisions at sqrt[s] = 8 TeV. Physical Review Letters. 112: 231802. PMID 24972196 DOI: 10.1103/Physrevlett.112.231802  0.091
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Search for a standard model Higgs boson produced in association with a top-quark pair and decaying to bottom quarks using a matrix element method. The European Physical Journal. C, Particles and Fields. 75: 251. PMID 26097407 DOI: 10.1140/Epjc/S10052-015-3454-1  0.088
2023 Luna A, Shah O, Sander C, Shannon P. cyjShiny: A cytoscape.js R Shiny Widget for network visualization and analysis. Plos One. 18: e0285339. PMID 37585474 DOI: 10.1371/journal.pone.0285339  0.084
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Study of vector boson scattering and search for new physics in events with two same-sign leptons and two jets. Physical Review Letters. 114: 051801. PMID 25699433 DOI: 10.1103/Physrevlett.114.051801  0.084
2013 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Searches for new physics using the tt¯ invariant mass distribution in pp collisions at √s=8 TeV. Physical Review Letters. 111: 211804. PMID 24313480 DOI: 10.1103/Physrevlett.111.211804  0.084
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Constraints on parton distribution functions and extraction of the strong coupling constant from the inclusive jet cross section in pp collisions at [Formula: see text][Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 288. PMID 26146483 DOI: 10.1140/Epjc/S10052-015-3499-1  0.083
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hörmann N, Hrubec J, ... ... Sander C, et al. Probing color coherence effects in pp collisions at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 74: 2901. PMID 25814895 DOI: 10.1140/Epjc/S10052-014-2901-8  0.083
2014 Tarhini AA, Edington H, Butterfield LH, Lin Y, Shuai Y, Tawbi H, Sander C, Yin Y, Holtzman M, Johnson J, Rao UN, Kirkwood JM. Immune monitoring of the circulation and the tumor microenvironment in patients with regionally advanced melanoma receiving neoadjuvant ipilimumab. Plos One. 9: e87705. PMID 24498358 DOI: 10.1371/journal.pone.0087705  0.082
2014 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Observation of the diphoton decay of the Higgs boson and measurement of its properties. The European Physical Journal. C, Particles and Fields. 74: 3076. PMID 25814871 DOI: 10.1140/Epjc/S10052-014-3076-Z  0.081
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Constraints on the pMSSM, AMSB model and on other models from the search for long-lived charged particles in proton-proton collisions at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 325. PMID 26213486 DOI: 10.1140/Epjc/S10052-015-3533-3  0.08
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Search for displaced supersymmetry in events with an electron and a muon with large impact parameters. Physical Review Letters. 114: 061801. PMID 25723204 DOI: 10.1103/Physrevlett.114.061801  0.08
2022 Burns D, Anokian E, Saunders EJ, Bristow RG, Fraser M, Reimand J, Schlomm T, Sauter G, Brors B, Korbel J, Weischenfeldt J, Waszak SM, Corcoran NM, Jung CH, Pope BJ, ... ... Sander C, et al. Rare Germline Variants Are Associated with Rapid Biochemical Recurrence After Radical Prostate Cancer Treatment: A Pan Prostate Cancer Group Study. European Urology. PMID 35659150 DOI: 10.1016/j.eururo.2022.05.007  0.078
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Precise determination of the mass of the Higgs boson and tests of compatibility of its couplings with the standard model predictions using proton collisions at 7 and 8[Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 212. PMID 25999783 DOI: 10.1140/Epjc/S10052-015-3351-7  0.077
2021 Fillmore N, Bell S, Shen C, Nguyen V, La J, Dubreuil M, Strymish J, Brophy M, Mehta G, Wu H, Lieberman J, Do N, Sander C. Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study. Plos One. 16: e0259061. PMID 34710137 DOI: 10.1371/journal.pone.0259061  0.076
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Search for invisible decays of Higgs bosons in the vector boson fusion and associated ZH production modes. The European Physical Journal. C, Particles and Fields. 74: 2980. PMID 25814906 DOI: 10.1140/Epjc/S10052-014-2980-6  0.075
2014 Villien M, Wey HY, Mandeville JB, Catana C, Polimeni JR, Sander CY, Zürcher NR, Chonde DB, Fowler JS, Rosen BR, Hooker JM. Dynamic functional imaging of brain glucose utilization using fPET-FDG. Neuroimage. 100: 192-9. PMID 24936683 DOI: 10.1016/J.Neuroimage.2014.06.025  0.074
2013 Reich-Schupke S, Alm J, Altmeyer P, Bachter D, Bayerl C, Beissert S, Bieber T, Böhmer J, Dill D, Dippel E, Dücker P, Effendy I, El Gammal S, Elsner P, Enk A, ... ... Sander C, et al. [Phlebology in German departments of dermatology. An analysis on behalf of the German Society of Phlebology]. Der Hautarzt; Zeitschrift Fã¼R Dermatologie, Venerologie, Und Verwandte Gebiete. 64: 685-94. PMID 24022632 DOI: 10.1007/S00105-013-2623-0  0.073
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Search for flavor-changing neutral currents in top-quark decays t → Zq in pp collisions at sqrt[s] = 8 TeV. Physical Review Letters. 112: 171802. PMID 24836238 DOI: 10.1103/Physrevlett.112.171802  0.071
2013 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Aguilo E, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hammer J, Hörmann N, ... ... Sander C, et al. Inclusive search for supersymmetry using razor variables in pp collisions at √s=7 TeV. Physical Review Letters. 111: 081802. PMID 24010428 DOI: 10.1103/Physrevlett.111.081802  0.071
2013 Sander C, Nielsen HM, Jacobsen J. Buccal delivery of metformin: TR146 cell culture model evaluating the use of bioadhesive chitosan discs for drug permeability enhancement. International Journal of Pharmaceutics. 458: 254-61. PMID 24148665 DOI: 10.1016/j.ijpharm.2013.10.026  0.07
2015 Sun N, Johnson J, Stack MS, Szajko J, Sander C, Rebuyon R, Deatsch A, Easton J, Tanner CE, Ruggiero ST. Nanoparticle analysis of cancer cells by light transmission spectroscopy. Analytical Biochemistry. 484: 58-65. PMID 25981981 DOI: 10.1016/J.Ab.2015.05.004  0.07
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Search for dark matter, extra dimensions, and unparticles in monojet events in proton-proton collisions at [Formula: see text][Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 235. PMID 26069461 DOI: 10.1140/Epjc/S10052-015-3451-4  0.069
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Measurements of the [Formula: see text][Formula: see text] production cross sections in the [Formula: see text] channel in proton-proton collisions at [Formula: see text] and [Formula: see text] and combined constraints on triple gauge couplings. The European Physical Journal. C, Particles and Fields. 75: 511. PMID 26549982 DOI: 10.1140/Epjc/S10052-015-3706-0  0.069
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Search for top-quark partners with charge 5/3 in the same-sign dilepton final state. Physical Review Letters. 112: 171801. PMID 24836237 DOI: 10.1103/Physrevlett.112.171801  0.069
2014 Meng-Lund E, Muff-Westergaard C, Sander C, Madelung P, Jacobsen J. A mechanistic based approach for enhancing buccal mucoadhesion of chitosan. International Journal of Pharmaceutics. 461: 280-5. PMID 24291123 DOI: 10.1016/j.ijpharm.2013.10.047  0.068
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Evidence for Collective Multiparticle Correlations in p-Pb Collisions. Physical Review Letters. 115: 012301. PMID 26182092 DOI: 10.1103/Physrevlett.115.012301  0.067
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Search for monotop signatures in proton-proton collisions at √s=8  TeV. Physical Review Letters. 114: 101801. PMID 25815923 DOI: 10.1103/Physrevlett.114.101801  0.067
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Measurement of the inclusive 3-jet production differential cross section in proton-proton collisions at 7 TeV and determination of the strong coupling constant in the TeV range. The European Physical Journal. C, Particles and Fields. 75: 186. PMID 25983654 DOI: 10.1140/Epjc/S10052-015-3376-Y  0.066
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Measurement of electroweak production of two jets in association with a Z boson in proton-proton collisions at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 66. PMID 25838791 DOI: 10.1140/Epjc/S10052-014-3232-5  0.066
2014 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Searches for electroweak production of charginos, neutralinos, and sleptons decaying to leptons and W, Z, and Higgs bosons in pp collisions at 8 TeV. The European Physical Journal. C, Particles and Fields. 74: 3036. PMID 25814912 DOI: 10.1140/Epjc/S10052-014-3036-7  0.063
2015 Sander CY, Hooker JM, Catana C, Rosen BR, Mandeville JB. Imaging Agonist-Induced D2/D3 Receptor Desensitization and Internalization In Vivo with PET/fMRI. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 26388148 DOI: 10.1038/Npp.2015.296  0.063
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Distributions of topological observables in inclusive three- and four-jet events in pp collisions at [Formula: see text][Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 302. PMID 26190937 DOI: 10.1140/Epjc/S10052-015-3491-9  0.061
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Search for top squark and Higgsino production using diphoton Higgs boson decays. Physical Review Letters. 112: 161802. PMID 24815637 DOI: 10.1103/Physrevlett.112.161802  0.061
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Measurement of the differential cross section for top quark pair production in pp collisions at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 542. PMID 26640401 DOI: 10.1140/Epjc/S10052-015-3709-X  0.06
2013 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hörmann N, Hrubec J, Jeitler M, ... ... Sander C, et al. Search for top squarks in R-parity-violating supersymmetry using three or more leptons and b-tagged jets. Physical Review Letters. 111: 221801. PMID 24329437 DOI: 10.1103/Physrevlett.111.221801  0.06
2015 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, Jeitler M, Kiesenhofer W, ... ... Sander C, et al. Search for decays of stopped long-lived particles produced in proton-proton collisions at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 75: 151. PMID 25983648 DOI: 10.1140/Epjc/S10052-015-3367-Z  0.06
2015 Loeffler M, Engel C, Ahnert P, Alfermann D, Arelin K, Baber R, Beutner F, Binder H, Brähler E, Burkhardt R, Ceglarek U, Enzenbach C, Fuchs M, Glaesmer H, Girlich F, ... ... Sander C, et al. The LIFE-Adult-Study: objectives and design of a population-based cohort study with 10,000 deeply phenotyped adults in Germany. Bmc Public Health. 15: 691. PMID 26197779 DOI: 10.1186/S12889-015-1983-Z  0.06
2015 Liao Z, Gall M, Yeap KB, Sander C, Clausner A, Mühle U, Gluch J, Standke Y, Aubel O, Beyer A, Hauschildt M, Zschech E. In Situ Time-dependent Dielectric Breakdown in the Transmission Electron Microscope: A Possibility to Understand the Failure Mechanism in Microelectronic Devices. Journal of Visualized Experiments : Jove. e52447. PMID 26167933 DOI: 10.3791/52447  0.059
2015 Jawinski P, Sander C, Mauche N, Spada J, Huang J, Schmidt A, Häntzsch M, Burkhardt R, Scholz M, Hegerl U, Hensch T. Brain Arousal Regulation in Carriers of Bipolar Disorder Risk Alleles. Neuropsychobiology. 72: 65-73. PMID 26509803 DOI: 10.1159/000437438  0.057
2014 Chatrchyan S, Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, ... ... Sander C, et al. Measurement of differential cross sections for the production of a pair of isolated photons in pp collisions at [Formula: see text]. The European Physical Journal. C, Particles and Fields. 74: 3129. PMID 25814874 DOI: 10.1140/Epjc/S10052-014-3129-3  0.056
2023 Zhang Y, Wang QL, Yuan C, Lee AA, Babic A, Ng K, Perez K, Nowak JA, Lagergren J, Stampfer MJ, Giovannucci EL, Sander C, Rosenthal MH, Kraft P, Wolpin BM. Pancreatic cancer is associated with medication changes prior to clinical diagnosis. Nature Communications. 14: 2437. PMID 37117188 DOI: 10.1038/s41467-023-38088-2  0.055
2021 Junqueira C, Crespo Ã, Ranjbar S, Lewandrowski M, Ingber J, de Lacerda LB, Parry B, Ravid S, Clark S, Ho F, Vora SM, Leger V, Beakes C, Margolin J, Russell N, ... ... Sander C, et al. SARS-CoV-2 infects blood monocytes to activate NLRP3 and AIM2 inflammasomes, pyroptosis and cytokine release. Research Square. PMID 34401873 DOI: 10.21203/rs.3.rs-153628/v1  0.055
2014 Khachatryan V, Sirunyan AM, Tumasyan A, Adam W, Bergauer T, Dragicevic M, Erö J, Fabjan C, Friedl M, Frühwirth R, Ghete VM, Hartl C, Hörmann N, Hrubec J, ... ... Sander C, et al. Measurement of top quark-antiquark pair production in association with a W or Z boson in pp collisions at [Formula: see text][Formula: see text]. The European Physical Journal. C, Particles and Fields. 74: 3060. PMID 25814914 DOI: 10.1140/Epjc/S10052-014-3060-7  0.054
2015 Sun Z, Fourcade J, Pagliano O, Chauvin JM, Sander C, Kirkwood JM, Zarour HM. IL10 and PD-1 Cooperate to Limit the Activity of Tumor-Specific CD8+ T Cells. Cancer Research. 75: 1635-44. PMID 25720800 DOI: 10.1158/0008-5472.CAN-14-3016  0.054
2015 Strauss M, Mergl R, Schindler S, Sander C, Schönknecht P, Hegerl U. What Does the Speed of Onset of a Depressive Episode Tell Us? Journal of Psychiatric Practice. 21: 275-80. PMID 26164053 DOI: 10.1097/PRA.0000000000000081  0.054
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